ERCC6
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Also known as CSBRAD26ARMD5
Summary
ERCC6 (ERCC excision repair 6, chromatin remodeling factor, HGNC:3438) is a protein-coding gene on chromosome 10q11.23, encoding Chimeric ERCC6-PGBD3 protein (P0DP91). Involved in repair of DNA damage following UV irradiation, acting either in the absence of ERCC6 or synergistically with ERCC6.
This gene encodes a DNA-binding protein that is important in transcription-coupled excision repair. The encoded protein has ATP-stimulated ATPase activity, interacts with several transcription and excision repair proteins, and may promote complex formation at DNA repair sites. Mutations in this gene are associated with Cockayne syndrome type B and cerebrooculofacioskeletal syndrome 1. Alternative splicing occurs between a splice site from exon 5 of this gene to the 3’ splice site upstream of the open reading frame (ORF) of the adjacent gene, piggyback-derived-3 (GeneID:267004), which activates the alternative polyadenylation site downstream of the piggyback-derived-3 ORF. The resulting transcripts encode a fusion protein that shares sequence with the product of each individual gene.
Source: NCBI Gene 2074 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Cockayne spectrum with or without cerebrooculofacioskeletal syndrome (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 2,066 total — 174 pathogenic, 147 likely-pathogenic
- Phenotypes (HPO): 258
- MANE Select transcript:
NM_000124
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3438 |
| Approved symbol | ERCC6 |
| Name | ERCC excision repair 6, chromatin remodeling factor |
| Location | 10q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CSB, RAD26, ARMD5 |
| Ensembl gene | ENSG00000225830 |
| Ensembl biotype | protein_coding |
| OMIM | 609413 |
| Entrez | 2074 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 8 protein_coding, 7 protein_coding_CDS_not_defined, 6 retained_intron, 2 nonsense_mediated_decay
ENST00000355832, ENST00000447839, ENST00000462247, ENST00000465653, ENST00000475116, ENST00000479652, ENST00000515869, ENST00000623073, ENST00000623115, ENST00000623318, ENST00000623788, ENST00000624341, ENST00000679552, ENST00000679596, ENST00000679811, ENST00000679871, ENST00000679974, ENST00000680107, ENST00000680233, ENST00000681632, ENST00000681659, ENST00000898255, ENST00000898256
RefSeq mRNA: 4 — MANE Select: NM_000124
NM_000124, NM_001277058, NM_001277059, NM_001346440
CCDS: CCDS60529, CCDS7229
Canonical transcript exons
ENST00000355832 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000703163 | 49470182 | 49470889 |
| ENSE00000703168 | 49460373 | 49460451 |
| ENSE00000905761 | 49476215 | 49476310 |
| ENSE00000905767 | 49505884 | 49506012 |
| ENSE00001880273 | 49454470 | 49459234 |
| ENSE00001915085 | 49538962 | 49539121 |
| ENSE00002435821 | 49470975 | 49471120 |
| ENSE00002469498 | 49472909 | 49473028 |
| ENSE00002471982 | 49478354 | 49478470 |
| ENSE00002492303 | 49472376 | 49472470 |
| ENSE00002514316 | 49482687 | 49482863 |
| ENSE00002515240 | 49473477 | 49473587 |
| ENSE00002521603 | 49474027 | 49474242 |
| ENSE00002536090 | 49493117 | 49493252 |
| ENSE00003510309 | 49461352 | 49461556 |
| ENSE00003630404 | 49500538 | 49500696 |
| ENSE00003632286 | 49483346 | 49483516 |
| ENSE00003796219 | 49530720 | 49530840 |
| ENSE00003796710 | 49532543 | 49532978 |
| ENSE00003800359 | 49528417 | 49528525 |
| ENSE00003801195 | 49524033 | 49524777 |
Expression profiles
Bgee: expression breadth ubiquitous, 257 present calls, max score 88.25.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.5590 / max 243.4991, expressed in 1796 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 109333 | 12.4364 | 1785 |
| 109335 | 3.6333 | 1316 |
| 109334 | 0.4893 | 246 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 88.25 | gold quality |
| secondary oocyte | CL:0000655 | 87.34 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.02 | gold quality |
| calcaneal tendon | UBERON:0003701 | 84.87 | gold quality |
| sural nerve | UBERON:0015488 | 84.17 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.93 | gold quality |
| vena cava | UBERON:0004087 | 83.17 | gold quality |
| tonsil | UBERON:0002372 | 83.14 | gold quality |
| corpus callosum | UBERON:0002336 | 82.84 | gold quality |
| stromal cell of endometrium | CL:0002255 | 82.59 | gold quality |
| ascending aorta | UBERON:0001496 | 82.36 | gold quality |
| thoracic aorta | UBERON:0001515 | 82.26 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 81.73 | gold quality |
| tendon | UBERON:0000043 | 81.70 | gold quality |
| adrenal tissue | UBERON:0018303 | 81.48 | gold quality |
| gingival epithelium | UBERON:0001949 | 81.38 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 81.04 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.28 | gold quality |
| right coronary artery | UBERON:0001625 | 80.12 | gold quality |
| skin of leg | UBERON:0001511 | 80.00 | gold quality |
| skin of abdomen | UBERON:0001416 | 79.96 | gold quality |
| ganglionic eminence | UBERON:0004023 | 79.93 | gold quality |
| cortical plate | UBERON:0005343 | 79.93 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 79.73 | gold quality |
| aorta | UBERON:0000947 | 79.59 | gold quality |
| colonic epithelium | UBERON:0000397 | 79.42 | gold quality |
| vagina | UBERON:0000996 | 78.90 | gold quality |
| esophagus mucosa | UBERON:0002469 | 78.89 | gold quality |
| medial globus pallidus | UBERON:0002477 | 78.51 | gold quality |
| gingiva | UBERON:0001828 | 78.47 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.01 |
| E-GEOD-99795 | no | 82.39 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
6 targets.
| Target | Regulation |
|---|---|
| BST2 | Activation |
| IFIH1 | Activation |
| IRF9 | Activation |
| RIGI | Activation |
| STAT1 | Activation |
| STAT2 | Activation |
Upstream regulators (CollecTRI, top): CEBPB, HIF1A
miRNA regulators (miRDB)
196 targeting ERCC6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
Literature-anchored findings (GeneRIF, showing 40)
- differential requirement for the ATPase domain of the Cockayne syndrome group B gene in the processing of UV-induced DNA damage and 8-oxoguanine lesions in human cells (PMID:11809892)
- CSB is involved in cellular repair of 8-hydroxyadenine in DNA. (PMID:12060667)
- Cockayne syndrome B protein(ERCC6) enhanced germ cell proliferation arrest and apoptosis, and increased embryonic lethality, suggesting its role in nucleotide excision repair. (PMID:12095617)
- CSB is a component of RNA pol I transcription (PMID:12419226)
- CS-B mutant cell lines had deficient transcription after oxidative stress. The CSB protein influenced the transcriptional regulation of certain genes. The ATPase function of CSB is biologically important as the ATPase mutants resemble the CS-B-null ones. (PMID:12606941)
- DNA damage stabilizes interaction of CSB with the transcription elongation machinery (PMID:15226310)
- no mutation in the CSB cDNA and a normal amount of CSB protein was detected in Kps3, a UV sensitive (UVsS) cell line obtained from an unrelated patient, indicating genetic heterogeneity in UVsS (PMID:15486090)
- CSB binds DNA as a dimer: DNA wrapping and unwrapping allows CSB to actively alter the DNA double helix conformation, which could influence nucleosomes and other protein-DNA interactions (PMID:15548521)
- results implicate CSB in the PARP-1 poly(ADP-ribosyl)ation response after oxidative stress and thus suggest a novel role of CSB in the cellular response to oxidative damage (PMID:16107709)
- enzymatically active CSB has an apparent molecular mass of approximately 360 kDa, consistent with dimerization of CSB (PMID:16128801)
- The Mutation of Cockayne Syndrome Group B can cause defective transcription-coupled repair and Cockayne syndrome . (PMID:16246722)
- Data highlight the pivotal role of CSB in initiating the transcriptional program of certain genes after UV irradiation, and also may explain some of the complex traits of Cockayne syndrome patients. (PMID:16601682)
- examines functional relationship between CSA and CSB in Cockayne syndrome (PMID:16751180)
- Results describe age-related macular degeneration (AMD) genetic risk factors through identification of polymorphisms in ERCC6 and in complement factor H. (PMID:16754848)
- indicate a general role for Cockayne syndrome group B protein (CSB) protein in maintenance and remodeling of chromatin structure and suggest that CS is a disease of transcriptional deregulation caused by misexpression of growth-suppressive (PMID:16772382)
- Purified recombinant Cockayne syndrome B protein and the major human apurinic/apyrimidinic endonuclease, APE1, physically and functionally interact. (PMID:17567611)
- The results reveal the mechanism underlying CSB-mediated activation of ribosomal DNA transcription and link G9a-dependent histone methylation to Pol I transcription elongation through chromatin. (PMID:17707230)
- ERCC6 rs3793784:C>G alters its transcriptional activity and may confer personalized susceptibility to lung cancer. (PMID:17854076)
- SNPs associated with prognosis of lung cancer was mapped to ERCC6. (PMID:17855454)
- results firstly suggest that the heterozygous and homozygous A allele of the ERCC6 codon 399 may be associated with the development of oral cancer and may be a novel useful marker for primary prevention and anticancer intervention. (PMID:17933579)
- CSB is not required for the ubiquitylation of human RNA polymerase II. (PMID:17996703)
- Genomic DNA sequencing of the CSB gene showed a homozygous deletion involving non-coding exon 1 and upstream regulatory sequences, but none of the coding exons (PMID:18183039)
- a null mutation in the CSB gene may have a role in adult-onset neurological degeneration in a patient with Cockayne syndrome (PMID:18185538)
- a domesticated PiggyBac-like transposon PGBD3, residing within intron 5 of the CSB gene, functions as an alternative 3’ terminal exon (PMID:18369450)
- a novel insertion mutation, c.1034-1035insT in exon 5 of the ERCC6 gene was identified (PMID:18446857)
- Description of three additional cases of Cerebro-oculo-facio-skeletal syndrome with novel mutations in the CSB gene. (PMID:18628313)
- Data show that truncated Cockayne syndrome B protein represses elongation by RNA polymerase I. (PMID:18656484)
- Data show that CSB mutant cells are unable to react to hypoxic stimuli by properly activating the hypoxia-inducible factor-1 (HIF-1) pathway, a defect that is further enhanced in the event of a concomitant genotoxic stress. (PMID:18784753)
- Genetic polymorphisms of the ERCC6 gene and its role in smoking related lung cancer was studied. (PMID:18789574)
- Somatic mutation of ERCC6 is rare in common human cancers in the Korean population. (PMID:19132999)
- CSB plays a role in repair of formamidopyrimidines, possibly by interacting with and stimulating NEIL1 (PMID:19179336)
- The CSB protein functions as a master switch factor that can selectively influence the transcription of specific sets of genes, after DNA damage or hypoxia, by influencing the biological functions of Tumor Suppressor Protein p53. (PMID:19221478)
- Genetic polymorphisms in ERCC6 is associated with Laryngeal cancer risk associated with smoking and alcohol consumption. (PMID:19444904)
- These results suggest that HNE-DNA adducts are extremely toxic endogenous DNA lesion, and that their processing involves CSB (PMID:19481676)
- Results describe the ATP-dependent and the ATP-independent biochemical functions of human Cockayne syndrome group B protein (CSB), and show that calcium is a novel metal cofactor of CSB for ATP hydrolysis. (PMID:19580815)
- The 45 published mutations in CSA and CSB to date and 43 new mutations in these genes together with the corresponding clinical data, are reported. (PMID:19894250)
- ERCC6 single nucleotide polymorphism is associated with bladder cancer susceptibility. (PMID:20044625)
- role in protect from aging- and stress-induced mtDNA mutations and apoptosis-mediated loss of subcutaneous fat, a hallmark of aging (PMID:20100872)
- The N-terminal region of CSB negatively regulates chromatin association during normal cell growth. (PMID:20122405)
- CSB plays a direct role in mitochondrial base excision repair (BER) by helping recruit, stabilize, and/or retain BER proteins in repair complexes associated with the inner mitochondrial membrane (PMID:20181933)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ercc6 | ENSDARG00000075612 |
| mus_musculus | Ercc6 | ENSMUSG00000054051 |
| rattus_norvegicus | Ercc6 | ENSRNOG00000030017 |
Paralogs (30): HLTF (ENSG00000071794), SMARCA2 (ENSG00000080503), SRCAP (ENSG00000080603), ATRX (ENSG00000085224), RAD54L (ENSG00000085999), BTAF1 (ENSG00000095564), CHD8 (ENSG00000100888), SMARCA1 (ENSG00000102038), CHD4 (ENSG00000111642), CHD5 (ENSG00000116254), TTF2 (ENSG00000116830), HELLS (ENSG00000119969), ZRANB3 (ENSG00000121988), CHD6 (ENSG00000124177), SMARCA4 (ENSG00000127616), INO80 (ENSG00000128908), CHD1L (ENSG00000131778), SMARCAL1 (ENSG00000138375), SHPRH (ENSG00000146414), SMARCA5 (ENSG00000153147), CHD1 (ENSG00000153922), SMARCAD1 (ENSG00000163104), RAD54L2 (ENSG00000164080), CHD3 (ENSG00000170004), CHD7 (ENSG00000171316), CHD2 (ENSG00000173575), CHD9 (ENSG00000177200), EP400 (ENSG00000183495), ERCC6L (ENSG00000186871), RAD54B (ENSG00000197275)
Protein
Protein identifiers
Chimeric ERCC6-PGBD3 protein — P0DP91 (reviewed: P0DP91, Q03468)
Alternative names: Chimeric CSB-PGBD3 protein
All UniProt accessions (7): A0A096LNQ7, A0A7P0T7Y4, A0A7P0T9G4, A0A7P0TA32, D6R9X7, P0DP91, Q03468
UniProt curated annotations — full annotation on UniProt →
Function. Involved in repair of DNA damage following UV irradiation, acting either in the absence of ERCC6 or synergistically with ERCC6. Involved in the regulation of gene expression. In the absence of ERCC6, induces the expression of genes characteristic of interferon-like antiviral responses. This response is almost completely suppressed in the presence of ERCC6. In the presence of ERCC6, regulates the expression of genes involved in metabolism regulation, including IGFBP5 and IGFBP7. In vitro binds to PGBD3-related transposable elements, called MER85s; these non-autonomous 140 bp elements are characterized by the presence of PGBD3 terminal inverted repeats and the absence of internal transposase ORF.
Subcellular location. Nucleus.
Tissue specificity. Expressed in heart and oocytes, but not in granulosa cells (at protein level).
Disease relevance. Premature ovarian failure 11 (POF11) [MIM:616946] An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. The protein represented in this entry is involved in disease pathogenesis. Disease-causing variants affect isoform CSB-PGBD3, which is a chimeric protein between ERCC6 N-terminus and the entire PGBD3 sequence.
Miscellaneous. Produced by an alternative splicing event that joins the first 5 exons of ERCC6 gene in frame to the entire PGBD3 coding region, which is located within ERCC6 intron 5. The resulting chimeric protein consists of the N-terminal 465 residues of ERCC6 tethered to the entire PGBD3 sequence.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P0DP91-1 | CSB-PGBD3 | yes |
| Q03468-1 | CSB | |
| Q8N328-1 | PGBD3 |
RefSeq proteins (4): NP_000115, NP_001263987, NP_001263988, NP_001333369 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029526 | PGBD | Domain |
| IPR052638 | PiggyBac_TE-derived | Family |
| IPR059240 | CC_ERCC-6_N | Domain |
| IPR000330 | SNF2_N | Domain |
| IPR001650 | Helicase_C-like | Domain |
| IPR014001 | Helicase_ATP-bd | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR038718 | SNF2-like_sf | Homologous_superfamily |
| IPR049730 | SNF2/RAD54-like_C | Domain |
| IPR050496 | SNF2_RAD54_helicase_repair | Family |
| IPR058951 | WHD_Rad26_CSB-like | Domain |
Pfam: PF00176, PF00271, PF13843, PF25875
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (170 total): sequence variant 37, helix 36, strand 21, modified residue 16, region of interest 15, compositionally biased region 15, mutagenesis site 14, turn 5, cross-link 3, chain 2, domain 2, short sequence motif 2, sequence conflict 1, binding site 1
Structure
Experimental structures (PDB)
12 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4CVO | X-RAY DIFFRACTION | 1.85 |
| 9BZ0 | ELECTRON MICROSCOPY | 1.9 |
| 8B3D | ELECTRON MICROSCOPY | 2.6 |
| 7OOB | ELECTRON MICROSCOPY | 2.7 |
| 7OO3 | ELECTRON MICROSCOPY | 2.8 |
| 7OOP | ELECTRON MICROSCOPY | 2.9 |
| 7OPC | ELECTRON MICROSCOPY | 3 |
| 7OPD | ELECTRON MICROSCOPY | 3 |
| 8B3F | ELECTRON MICROSCOPY | 3.1 |
| 9ER2 | ELECTRON MICROSCOPY | 3.3 |
| 9FD2 | ELECTRON MICROSCOPY | 3.4 |
| 9HWG | ELECTRON MICROSCOPY | 3.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P0DP91-F1 | 70.12 | 0.32 |
| AF-Q03468-F1 | 61.81 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
P0DP91 (canonical)
Post-translational modifications (5): 158, 429, 430, 554, 255
Q03468
Ligand- & substrate-binding residues (1): 532–539
Post-translational modifications (14): 10, 158, 170, 297, 429, 430, 448, 486, 489, 1054, 1142, 1348, 205, 255
Mutagenesis-validated functional residues (14):
| Position | Phenotype |
|---|---|
| 10 | non-phosphorylatable by atm. loss of chromatin remodeling activity and its ability to promote the intramolecular interac |
| 10 | phosphomimetic mutant. no loss of chromatin remodeling activity and its ability to promote the intramolecular interactio |
| 158 | non-phosphorylatable by cdk2. loss of chromatin remodeling activity and its ability to promote the intramolecular intera |
| 158 | phosphomimetic mutant. no loss of chromatin remodeling activity and its ability to promote the intramolecular interactio |
| 205 | loss of sumoylation and defects in transcription-coupled nucleotide excision repair. |
| 538 | abolished atpase activity without abolishing ability to promote transcription-coupled nucleotide excision repair (tc-ner |
| 1385–1399 | abolished interaction with ercc8/csa and ercc8/csa recruitmentto dna damage sites. |
| 1427–1428 | fails to bind polyubiquitin chains. |
| 1457 | no loss of sumoylation; when associated with r-1487 and r-1489. |
| 1470 | loss of interaction with rif1; when associated with g-1486 and g-1488. |
| 1486 | loss of interaction with rif1; when associated with g-1470 and g-1488. |
| 1487 | no loss of sumoylation; when associated with r-1457 and r-1489. no loss of sumoylation; when associated with r-1489. |
| 1488 | loss of interaction with rif1; when associated with g-1470 and g-1486. |
| 1489 | no loss of sumoylation; when associated with r-1457 and r-1487. no loss of sumoylation; when associated with r-1487. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-427389 | ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression |
| R-HSA-5250924 | B-WICH complex positively regulates rRNA expression |
| R-HSA-6781823 | Formation of TC-NER Pre-Incision Complex |
| R-HSA-6781827 | Transcription-Coupled Nucleotide Excision Repair (TC-NER) |
| R-HSA-6782135 | Dual incision in TC-NER |
| R-HSA-6782210 | Gap-filling DNA repair synthesis and ligation in TC-NER |
| R-HSA-73762 | RNA Polymerase I Transcription Initiation |
MSigDB gene sets: 784 (showing top):
GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, GOBP_REGULATION_OF_DNA_RECOMBINATION, GOBP_RESPONSE_TO_IONIZING_RADIATION, GOBP_REGULATION_OF_PHOSPHORYLATION, GOBP_REGULATION_OF_DEFENSE_RESPONSE_TO_VIRUS, GOBP_TRANSCRIPTION_COUPLED_NUCLEOTIDE_EXCISION_REPAIR, GOBP_POSITIVE_REGULATION_OF_DNA_TEMPLATED_TRANSCRIPTION_INITIATION, GOBP_NEGATIVE_REGULATION_OF_DNA_REPAIR, GOBP_PEPTIDYL_SERINE_MODIFICATION, REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_INITIATION, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_GROWTH, GOBP_TRANSCRIPTION_BY_RNA_POLYMERASE_III, GOBP_NEUROGENESIS, GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR_VIA_HOMOLOGOUS_RECOMBINATION
GO Biological Process (42): positive regulation of defense response to virus by host (GO:0002230), positive regulation of gene expression (GO:0010628), positive regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033141), positive regulation of DNA repair (GO:0045739), single strand break repair (GO:0000012), DNA damage checkpoint signaling (GO:0000077), response to superoxide (GO:0000303), DNA repair (GO:0006281), transcription-coupled nucleotide-excision repair (GO:0006283), base-excision repair (GO:0006284), pyrimidine dimer repair (GO:0006290), chromatin remodeling (GO:0006338), transcription elongation by RNA polymerase I (GO:0006362), transcription by RNA polymerase II (GO:0006366), response to oxidative stress (GO:0006979), JNK cascade (GO:0007254), intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630), response to toxic substance (GO:0009636), response to X-ray (GO:0010165), response to UV-B (GO:0010224), response to gamma radiation (GO:0010332), neurogenesis (GO:0022008), neuron differentiation (GO:0030182), neuron projection development (GO:0031175), regulation of DNA-templated transcription elongation (GO:0032784), positive regulation of DNA-templated transcription, elongation (GO:0032786), regulation of transcription elongation by RNA polymerase II (GO:0034243), multicellular organism growth (GO:0035264), DNA protection (GO:0042262), photoreceptor cell maintenance (GO:0045494), positive regulation of transcription by RNA polymerase I (GO:0045943), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of transcription by RNA polymerase III (GO:0045945), positive regulation of transcription initiation by RNA polymerase II (GO:0060261), protein localization to chromatin (GO:0071168), double-strand break repair via classical nonhomologous end joining (GO:0097680), positive regulation of double-strand break repair via homologous recombination (GO:1905168), negative regulation of double-strand break repair via nonhomologous end joining (GO:2001033), DNA damage response (GO:0006974), nervous system development (GO:0007399)
GO Molecular Function (15): sequence-specific DNA binding (GO:0043565), DNA binding (GO:0003677), chromatin binding (GO:0003682), helicase activity (GO:0004386), ATP binding (GO:0005524), ATP-dependent activity, acting on DNA (GO:0008094), ATP hydrolysis activity (GO:0016887), protein tyrosine kinase activator activity (GO:0030296), RNA polymerase binding (GO:0070063), chromatin-protein adaptor activity (GO:0140463), ATP-dependent chromatin remodeler activity (GO:0140658), ATP-dependent DNA damage sensor activity (GO:0140664), nucleotide binding (GO:0000166), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (8): nucleoplasm (GO:0005654), nuclear body (GO:0016604), nucleus (GO:0005634), nucleolus (GO:0005730), transcription elongation factor complex (GO:0008023), site of DNA damage (GO:0090734), B-WICH complex (GO:0110016), chromosome (GO:0005694)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Transcription-Coupled Nucleotide Excision Repair (TC-NER) | 3 |
| Positive epigenetic regulation of rRNA expression | 2 |
| Nucleotide Excision Repair | 1 |
| RNA Polymerase I Promoter Clearance | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA repair | 4 |
| ATP-dependent activity | 3 |
| intracellular membraneless organelle | 3 |
| DNA damage response | 2 |
| chromatin organization | 2 |
| DNA binding | 2 |
| binding | 2 |
| ATP-dependent activity, acting on DNA | 2 |
| nuclear lumen | 2 |
| cellular anatomical structure | 2 |
| nucleoplasm | 2 |
| regulation of defense response to virus by host | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| positive regulation of peptidyl-serine phosphorylation | 1 |
| regulation of peptidyl-serine phosphorylation of STAT protein | 1 |
| serine phosphorylation of STAT protein | 1 |
| regulation of DNA repair | 1 |
| positive regulation of response to stimulus | 1 |
| positive regulation of DNA metabolic process | 1 |
| DNA integrity checkpoint signaling | 1 |
| signal transduction in response to DNA damage | 1 |
| response to oxygen radical | 1 |
| DNA metabolic process | 1 |
| nucleotide-excision repair | 1 |
| DNA-templated transcription elongation | 1 |
| transcription by RNA polymerase I | 1 |
| DNA-templated transcription | 1 |
| response to stress | 1 |
| MAPK cascade | 1 |
| intrinsic apoptotic signaling pathway | 1 |
| response to chemical | 1 |
| response to ionizing radiation | 1 |
| response to UV | 1 |
| nucleic acid binding | 1 |
| nucleic acid conformation isomerase activity | 1 |
| catalytic activity, acting on a nucleic acid | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RBBP4 | TNRC18 | psi-mi:“MI:0914”(association) | 0.530 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2B | OSBPL8 | psi-mi:“MI:0914”(association) | 0.350 |
| PNMA2 | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| PTGES3 | SBNO1 | psi-mi:“MI:0914”(association) | 0.350 |
| MPL | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPC | SBNO1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SUPV3L1 | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.270 |
| ZC3H11A | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ZRANB2 | SBNO1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| DDX6 | RPSA2 | psi-mi:“MI:2364”(proximity) | 0.270 |
ESM2 similar proteins: A0A345BJN7, A0A7H0DN82, B6EU02, O13033, O45595, O93182, P03347, P03348, P03975, P04592, P04593, P05887, P05890, P05892, P0C798, P0C799, P0DP91, P12450, P12495, P13784, P18800, P19199, P27978, P34470, P35962, P40083, P40847, P69730, P69731, P69732, Q02271, Q23243, Q28C26, Q2HEW5, Q54CZ6, Q5EA92, Q5FVK8, Q67708, Q6DRC3, Q6EWG9
Diamond homologs: A0A0P0WGX7, A2A8L1, A2BGR3, A3KFM7, A3KMX0, A4PBL4, A6QQR4, A7Z019, A9X4T1, B0XPE7, B3MMA5, B3NAN8, B4JCS7, B4KHL5, B4M9A8, B4MX21, B4NXB8, B5BT18, B6ZLK2, D3ZA12, D3ZD32, E1B7X9, E7F1C4, E9PZM4, F1Q8K0, F4I2H2, F4IHS2, F4IV45, F4J9M5, F4JY24, F4K128, F4KBP5, F8VPZ5, G5EF53, O12944, O14139, O14646, O14647, O14981, O16102
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ABL1 | “up-regulates activity” | ERCC6 | phosphorylation |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
2066 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 174 |
| Likely pathogenic | 147 |
| Uncertain significance | 610 |
| Likely benign | 862 |
| Benign | 80 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1034077 | NM_000124.4(ERCC6):c.2093dup (p.Thr699fs) | Pathogenic |
| 1068519 | NM_000124.4(ERCC6):c.537dup (p.Asn180Ter) | Pathogenic |
| 1070424 | NM_000124.4(ERCC6):c.1412_1413del (p.Leu471fs) | Pathogenic |
| 1070425 | NM_000124.4(ERCC6):c.1690G>T (p.Glu564Ter) | Pathogenic |
| 1071564 | NM_000124.4(ERCC6):c.1499del (p.Pro500fs) | Pathogenic |
| 1072162 | NC_000010.11:g.49459235del | Pathogenic |
| 1072519 | NM_000124.4(ERCC6):c.3522_3523delinsTT (p.Met1174_Glu1175delinsIleTer) | Pathogenic |
| 1073494 | NM_000124.4(ERCC6):c.4060C>T (p.Gln1354Ter) | Pathogenic |
| 1074052 | NM_000124.4(ERCC6):c.1750_1751insT (p.Glu584fs) | Pathogenic |
| 1074056 | NM_000124.4(ERCC6):c.2286+1G>T | Pathogenic |
| 1075573 | NM_000124.4(ERCC6):c.3371del (p.Ser1124fs) | Pathogenic |
| 1180522 | GRCh37/hg19 10q11.22-11.23(chr10:48301535-51807296)x3 | Pathogenic |
| 1256026 | NM_001277058.2(ERCC6):c.3100G>T (p.Glu1034Ter) | Pathogenic |
| 1356734 | NM_000124.4(ERCC6):c.4037C>G (p.Ser1346Ter) | Pathogenic |
| 1362604 | NM_000124.4(ERCC6):c.55C>T (p.Gln19Ter) | Pathogenic |
| 1384450 | NM_000124.4(ERCC6):c.3564_3565del (p.His1188fs) | Pathogenic |
| 1403796 | NM_000124.4(ERCC6):c.2857C>T (p.Gln953Ter) | Pathogenic |
| 1404986 | NM_000124.4(ERCC6):c.3052del (p.Thr1018fs) | Pathogenic |
| 1409508 | NM_000124.4(ERCC6):c.304C>T (p.Gln102Ter) | Pathogenic |
| 1411859 | NM_000124.4(ERCC6):c.2951del (p.Asn984fs) | Pathogenic |
| 1416690 | NM_000124.4(ERCC6):c.2776del (p.Ala926fs) | Pathogenic |
| 1420712 | NM_000124.4(ERCC6):c.3335del (p.Asn1112fs) | Pathogenic |
| 143186 | NM_000124.4(ERCC6):c.543+4del | Pathogenic |
| 1433939 | NM_000124.4(ERCC6):c.1066G>T (p.Glu356Ter) | Pathogenic |
| 1443341 | NM_000124.4(ERCC6):c.445C>T (p.Gln149Ter) | Pathogenic |
| 1452371 | NM_000124.4(ERCC6):c.2066_2067del (p.Leu688_Phe689insTer) | Pathogenic |
| 1452599 | NM_000124.4(ERCC6):c.3520del (p.Met1174fs) | Pathogenic |
| 1453778 | NM_000124.4(ERCC6):c.3040C>T (p.Gln1014Ter) | Pathogenic |
| 1453999 | NM_000124.4(ERCC6):c.3464dup (p.Tyr1155Ter) | Pathogenic |
| 1454137 | NM_000124.4(ERCC6):c.1258C>T (p.Gln420Ter) | Pathogenic |
SpliceAI
3773 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:49461346:TCTTA:T | donor_loss | 1.0000 |
| 10:49461347:CTTA:C | donor_loss | 1.0000 |
| 10:49461348:TTAC:T | donor_loss | 1.0000 |
| 10:49461349:TACTT:T | donor_loss | 1.0000 |
| 10:49461350:A:AC | donor_gain | 1.0000 |
| 10:49461350:ACTTT:A | donor_loss | 1.0000 |
| 10:49461351:C:CC | donor_gain | 1.0000 |
| 10:49461351:CT:C | donor_gain | 1.0000 |
| 10:49461351:CTT:C | donor_gain | 1.0000 |
| 10:49461552:GCCAA:G | acceptor_gain | 1.0000 |
| 10:49461553:CCAA:C | acceptor_gain | 1.0000 |
| 10:49461553:CCAAC:C | acceptor_gain | 1.0000 |
| 10:49461554:CAA:C | acceptor_gain | 1.0000 |
| 10:49461554:CAAC:C | acceptor_gain | 1.0000 |
| 10:49461555:AA:A | acceptor_gain | 1.0000 |
| 10:49461557:C:CC | acceptor_gain | 1.0000 |
| 10:49461561:C:CT | acceptor_gain | 1.0000 |
| 10:49461562:A:T | acceptor_gain | 1.0000 |
| 10:49470176:GATTA:G | donor_loss | 1.0000 |
| 10:49470177:ATTAC:A | donor_loss | 1.0000 |
| 10:49470178:TTA:T | donor_loss | 1.0000 |
| 10:49470179:TACCT:T | donor_loss | 1.0000 |
| 10:49470180:A:C | donor_loss | 1.0000 |
| 10:49470885:AGTTC:A | acceptor_gain | 1.0000 |
| 10:49470886:GTTC:G | acceptor_gain | 1.0000 |
| 10:49470887:TTC:T | acceptor_gain | 1.0000 |
| 10:49470888:TC:T | acceptor_gain | 1.0000 |
| 10:49470889:CC:C | acceptor_gain | 1.0000 |
| 10:49470890:C:CC | acceptor_gain | 1.0000 |
| 10:49471121:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
9834 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:49472932:A:G | W936R | 1.000 |
| 10:49472932:A:T | W936R | 1.000 |
| 10:49482800:A:G | W686R | 1.000 |
| 10:49482800:A:T | W686R | 1.000 |
| 10:49493197:A:G | W581R | 1.000 |
| 10:49493197:A:T | W581R | 1.000 |
| 10:49458841:A:G | W1486R | 0.999 |
| 10:49458841:A:T | W1486R | 0.999 |
| 10:49472376:C:G | R975P | 0.999 |
| 10:49472450:T:A | R950S | 0.999 |
| 10:49472450:T:G | R950S | 0.999 |
| 10:49472451:C:G | R950T | 0.999 |
| 10:49472455:A:G | W949R | 0.999 |
| 10:49472455:A:T | W949R | 0.999 |
| 10:49472460:C:G | R947P | 0.999 |
| 10:49472952:A:T | V929D | 0.999 |
| 10:49478415:A:G | L742P | 0.999 |
| 10:49478427:A:T | I738K | 0.999 |
| 10:49478436:C:G | R735P | 0.999 |
| 10:49478439:A:G | L734S | 0.999 |
| 10:49478460:G:T | A727D | 0.999 |
| 10:49482724:A:T | I711N | 0.999 |
| 10:49482748:A:G | F703S | 0.999 |
| 10:49482766:A:G | L697S | 0.999 |
| 10:49482802:A:G | L685P | 0.999 |
| 10:49483383:C:G | R652P | 0.999 |
| 10:49483395:C:T | G648E | 0.999 |
| 10:49483396:C:G | G648R | 0.999 |
| 10:49483396:C:T | G648R | 0.999 |
| 10:49483398:T:A | E647V | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000027546 (10:49474397 G>A), RS1000045194 (10:49493035 A>G), RS1000056717 (10:49460116 T>C), RS1000098334 (10:49494883 A>T), RS1000137316 (10:49526309 A>G), RS1000145050 (10:49435951 G>A), RS1000162635 (10:49482353 T>C), RS1000212995 (10:49482015 C>G), RS1000223846 (10:49449199 G>T), RS1000287660 (10:49486846 T>A,C), RS1000298378 (10:49519561 A>G), RS1000304452 (10:49531546 G>A), RS1000348694 (10:49519244 T>C), RS1000376022 (10:49538046 G>T), RS1000403068 (10:49466656 C>A)
Disease associations
OMIM: gene MIM:609413 | disease phenotypes: MIM:214150, MIM:211980, MIM:278800, MIM:600630, MIM:613761, MIM:616946, MIM:133540, MIM:120970
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Cockayne spectrum with or without cerebrooculofacioskeletal syndrome | Definitive | Autosomal recessive |
| Cockayne syndrome type 2 | Definitive | Autosomal recessive |
| UV-sensitive syndrome 1 | Strong | Autosomal recessive |
| COFS syndrome | Supportive | Autosomal recessive |
| UV-sensitive syndrome | Supportive | Autosomal recessive |
| premature ovarian failure 11 | Limited | Unknown |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Cockayne spectrum with or without cerebrooculofacioskeletal syndrome | Definitive | AR |
Mondo (15): cerebrooculofacioskeletal syndrome 1 (MONDO:0008955), lung cancer (MONDO:0008903), de Sanctis-Cacchione syndrome (MONDO:0010217), UV-sensitive syndrome 1 (MONDO:0010909), age related macular degeneration 5 (MONDO:0013409), premature ovarian failure 11 (MONDO:0014843), Cockayne syndrome type 2 (MONDO:0019570), Cockayne syndrome (MONDO:0016006), lung carcinoma (MONDO:0005138), intellectual disability (MONDO:0001071), Cockayne spectrum with or without cerebrooculofacioskeletal syndrome (MONDO:0100506), cone-rod dystrophy (MONDO:0015993), hereditary breast ovarian cancer syndrome (MONDO:0003582), COFS syndrome (MONDO:0008926), UV-sensitive syndrome (MONDO:0015797)
Orphanet (8): UV-sensitive syndrome (Orphanet:178338), Cockayne syndrome (Orphanet:191), Cockayne syndrome type 2 (Orphanet:90322), Rare genetic premature ovarian failure (Orphanet:485382), Cone rod dystrophy (Orphanet:1872), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), De Sanctis-Cacchione syndrome (Orphanet:1569), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
258 total (30 of 258 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000011 | Neurogenic bladder |
| HP:0000016 | Urinary retention |
| HP:0000026 | Male hypogonadism |
| HP:0000028 | Cryptorchidism |
| HP:0000054 | Micropenis |
| HP:0000072 | Hydroureter |
| HP:0000083 | Renal insufficiency |
| HP:0000089 | Renal hypoplasia |
| HP:0000093 | Proteinuria |
| HP:0000122 | Unilateral renal agenesis |
| HP:0000126 | Hydronephrosis |
| HP:0000135 | Hypogonadism |
| HP:0000164 | Abnormality of the dentition |
| HP:0000232 | Everted lower lip vermilion |
| HP:0000233 | Thin vermilion border |
| HP:0000252 | Microcephaly |
| HP:0000253 | Progressive microcephaly |
| HP:0000276 | Long face |
| HP:0000292 | Loss of facial adipose tissue |
| HP:0000303 | Mandibular prognathia |
| HP:0000325 | Triangular face |
| HP:0000331 | Short chin |
| HP:0000340 | Sloping forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000365 | Hearing impairment |
| HP:0000377 | Abnormal pinna morphology |
| HP:0000400 | Macrotia |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006168_8 | Pulse pressure x alcohol consumption interaction (2df test) | 5.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004329 | alcohol drinking |
| EFO:0005763 | pulse pressure measurement |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003057 | Cockayne Syndrome | C05.116.099.343.250; C10.574.500.362; C16.131.077.250; C16.320.240.562; C16.320.400.200; C18.452.284.250 |
| D000071700 | Cone-Rod Dystrophies | C11.270.152; C11.768.585.658.250; C16.320.290.152 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| C535992 | De Sanctis-Cacchione syndrome (supp.) | |
| C563466 | UV-Sensitive Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
64 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases expression | 3 |
| Aflatoxin B1 | increases methylation | 2 |
| FR900359 | affects phosphorylation | 1 |
| ginger extract | increases abundance, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| illudin S | increases response to substance | 1 |
| 2-methyl-4-isothiazolin-3-one | decreases expression | 1 |
| arsenite | decreases reaction, affects binding | 1 |
| potassium bromate | affects response to substance, increases reaction | 1 |
| 3-aminobenzamide | decreases reaction, increases abundance, affects response to substance | 1 |
| cupric chloride | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| ascaridole | affects response to substance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| benzyloxycarbonylleucyl-leucyl-leucine aldehyde | decreases expression, decreases reaction | 1 |
| acylfulvene | increases response to substance, affects reaction | 1 |
| irofulven | increases response to substance | 1 |
| NU 1025 | affects response to substance, decreases reaction, increases abundance | 1 |
| kurarinone | affects response to substance | 1 |
| N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloride | increases abundance, decreases reaction, affects response to substance, decreases abundance, increases reaction | 1 |
| veliparib | affects response to substance, increases reaction | 1 |
| 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide | increases abundance, decreases reaction | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| norkurarinol | affects response to substance | 1 |
| Oxaliplatin | affects response to substance | 1 |
| Decitabine | increases expression | 1 |
| Arsenic Trioxide | affects response to substance | 1 |
| Acetyl Coenzyme A | decreases abundance, decreases reaction | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
Cellosaurus cell lines
42 cell lines: 25 finite cell line, 8 transformed cell line, 4 induced pluripotent stem cell, 3 cancer cell line, 2 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_2557 | CS4BR LCL | Transformed cell line | Female |
| CVCL_4Y26 | GM1629(SV) | Transformed cell line | Female |
| CVCL_7314 | CS2BE | Finite cell line | Male |
| CVCL_7504 | GM10902 | Transformed cell line | Female |
| CVCL_A0JU | IUFi001-A | Induced pluripotent stem cell | Female |
| CVCL_F146 | GM10903 | Finite cell line | Female |
| CVCL_F147 | GM10900 | Transformed cell line | Female |
| CVCL_F148 | GM10901 | Finite cell line | Female |
| CVCL_F149 | GM10904 | Transformed cell line | Male |
| CVCL_F150 | GM10905 | Finite cell line | Male |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00158041 | PHASE4 | COMPLETED | Subcutaneous Amifostine Safety Study |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00365508 | PHASE4 | COMPLETED | Counseling and Nicotine Replacement Therapy in Helping Adult Smokers Quit Smoking |
| NCT00440960 | PHASE4 | COMPLETED | Anesthesia in Flexible Bronchoscopy for Lung Cancer Diagnostic |
| NCT00492843 | PHASE4 | TERMINATED | Loading Dose or Standard Dose of Intravenous Ibandronate in Treating Patients With Lung Cancer and Skeletal Metastasis |
| NCT00666978 | PHASE4 | COMPLETED | Health Education Counseling With or Without Bupropion in Helping African Americans Stop Smoking |
| NCT00675168 | PHASE4 | UNKNOWN | Positron Emission Tomography (PET)/Computed Tomography (CT) and Roentgen in Lung Cancer: Evaluation of Patients in General Practice |
| NCT00712647 | PHASE4 | COMPLETED | Carotene and Retinol Efficacy Trial |
| NCT00747773 | PHASE4 | COMPLETED | Cryospray Ablation of Surgical Resection Specimens To Determine Safety And Histological Effect In The Lung |
| NCT01060137 | PHASE4 | COMPLETED | Fentanyl Matrix in Lung Cancer Pain |
| NCT01381627 | PHASE4 | UNKNOWN | Safety Evaluation of Dexmedetomidine for EBUS-TBNA |
| NCT01741506 | PHASE4 | COMPLETED | Coagulation Profile in Patients Undergoing Video Assisted Thorascopic Surgery (VATS) for Lung Cancer |
| NCT02246023 | PHASE4 | COMPLETED | Fractionated Versus Target-controlled Propofol Administration in Bronchoscopy |
| NCT02275702 | PHASE4 | COMPLETED | Randomized Study of Preoperative Dexamethasone for Quality of Recovery in VATS Lung Resection Patients |
| NCT02346318 | PHASE4 | UNKNOWN | The Randomized Controlled Clinical Trial of Kushen Injection |
| NCT02476526 | PHASE4 | COMPLETED | Safety of Low Dose IV Contrast CT Scanning in Chronic Kidney Disease |
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Related Atlas pages
- Associated diseases: Cockayne spectrum with or without cerebrooculofacioskeletal syndrome, Cockayne syndrome type 2, UV-sensitive syndrome 1, premature ovarian failure 11, COFS syndrome, UV-sensitive syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): age related macular degeneration 5, cerebrooculofacioskeletal syndrome 1, Cockayne spectrum with or without cerebrooculofacioskeletal syndrome, Cockayne syndrome, Cockayne syndrome type 2, COFS syndrome, cone-rod dystrophy, de Sanctis-Cacchione syndrome, lung cancer, premature ovarian failure 11, UV-sensitive syndrome, UV-sensitive syndrome 1