ERGIC1
gene geneOn this page
Also known as ERGIC32ERGIC-32KIAA1181NET24
Summary
ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1, HGNC:29205) is a protein-coding gene on chromosome 5q35.1, encoding Endoplasmic reticulum-Golgi intermediate compartment protein 1 (Q969X5). Possible role in transport between endoplasmic reticulum and Golgi.
This gene encodes a cycling membrane protein which is an endoplasmic reticulum-golgi intermediate compartment (ERGIC) protein which interacts with other members of this protein family to increase their turnover.
Source: NCBI Gene 57222 — RefSeq curated summary.
At a glance
- Gene–disease (curated): arthrogryposis multiplex congenita 2, neurogenic type (Strong, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 55 total — 2 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 40
- Druggable target: yes
- MANE Select transcript:
NM_001031711
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29205 |
| Approved symbol | ERGIC1 |
| Name | endoplasmic reticulum-golgi intermediate compartment 1 |
| Location | 5q35.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ERGIC32, ERGIC-32, KIAA1181, NET24 |
| Ensembl gene | ENSG00000113719 |
| Ensembl biotype | protein_coding |
| OMIM | 617946 |
| Entrez | 57222 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 10 protein_coding, 10 nonsense_mediated_decay, 8 protein_coding_CDS_not_defined, 7 retained_intron
ENST00000326654, ENST00000393784, ENST00000518247, ENST00000519567, ENST00000519796, ENST00000519860, ENST00000520326, ENST00000520399, ENST00000520642, ENST00000521392, ENST00000523215, ENST00000523291, ENST00000523366, ENST00000523650, ENST00000684928, ENST00000685391, ENST00000686449, ENST00000686615, ENST00000686955, ENST00000687702, ENST00000687901, ENST00000688069, ENST00000689975, ENST00000689977, ENST00000690799, ENST00000690977, ENST00000691612, ENST00000692557, ENST00000693299, ENST00000693572, ENST00000877925, ENST00000877926, ENST00000877927, ENST00000877928, ENST00000913765
RefSeq mRNA: 1 — MANE Select: NM_001031711
NM_001031711
CCDS: CCDS34292
Canonical transcript exons
ENST00000393784 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000812879 | 172935188 | 172935310 |
| ENSE00001269092 | 172909667 | 172909761 |
| ENSE00001715357 | 172834251 | 172834433 |
| ENSE00001946832 | 172950709 | 172952683 |
| ENSE00003465548 | 172926509 | 172926569 |
| ENSE00003508561 | 172924005 | 172924109 |
| ENSE00003545934 | 172888699 | 172888760 |
| ENSE00003627457 | 172897002 | 172897074 |
| ENSE00003670300 | 172932436 | 172932536 |
| ENSE00003691818 | 172914714 | 172914838 |
Expression profiles
Bgee: expression breadth ubiquitous, 253 present calls, max score 98.88.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 77.3677 / max 1028.1139, expressed in 1820 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 60240 | 29.2335 | 1778 |
| 60239 | 28.4520 | 1800 |
| 60238 | 19.2629 | 1803 |
| 60266 | 0.2090 | 74 |
| 60241 | 0.1537 | 34 |
| 60267 | 0.0566 | 27 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 98.88 | gold quality |
| oviduct epithelium | UBERON:0004804 | 98.49 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.39 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.37 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.36 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.31 | gold quality |
| ileal mucosa | UBERON:0000331 | 98.13 | gold quality |
| adrenal gland | UBERON:0002369 | 98.06 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.99 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.96 | gold quality |
| body of stomach | UBERON:0001161 | 97.80 | gold quality |
| parotid gland | UBERON:0001831 | 97.77 | gold quality |
| decidua | UBERON:0002450 | 97.72 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.65 | gold quality |
| ascending aorta | UBERON:0001496 | 97.64 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 97.57 | gold quality |
| rectum | UBERON:0001052 | 97.56 | gold quality |
| prostate gland | UBERON:0002367 | 97.51 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.50 | gold quality |
| stomach | UBERON:0000945 | 97.40 | gold quality |
| right lung | UBERON:0002167 | 97.25 | gold quality |
| left uterine tube | UBERON:0001303 | 97.19 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 97.11 | gold quality |
| minor salivary gland | UBERON:0001830 | 97.07 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 97.02 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 96.98 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.97 | gold quality |
| transverse colon | UBERON:0001157 | 96.97 | gold quality |
| fallopian tube | UBERON:0003889 | 96.93 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 96.92 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 22.34 |
| E-ANND-3 | yes | 8.54 |
| E-CURD-122 | yes | 4.68 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 6)
- ERGIC-32 functions as a modulator of the hErv41-hErv46 complex by stabilizing hErv46 (PMID:15308636)
- AIM1, ERGIC1, and TPX2 were shown to be highly expressed especially in prostate cancer tissues, and high mRNA expression of ERGIC1 and TMED3 associated with AR and ERG oncogene expression (PMID:22761906)
- Homozygous pathogenic variant in the endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein (ERGIC1) gene was identified in arthrogryposis multiplex congenita (AMC) neuropathic type. (PMID:28317099)
- Data indicate that abnormal ERGIC1 and DNA-PKcs expression may play an important role in gastric cancer initiation. (PMID:28970727)
- ERGIC1 might play an inhibitory role in the initiation and progression of gastric cancer. (PMID:29549924)
- Bi-allelic loss of ERGIC1 causes relatively mild arthrogryposis. (PMID:34037256)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ergic1 | ENSDARG00000100047 |
| mus_musculus | Ergic1 | ENSMUSG00000001576 |
| rattus_norvegicus | Ergic1 | ENSRNOG00000003508 |
| caenorhabditis_elegans | WBGENE00022416 |
Paralogs (2): ERGIC2 (ENSG00000087502), ERGIC3 (ENSG00000125991)
Protein
Protein identifiers
Endoplasmic reticulum-Golgi intermediate compartment protein 1 — Q969X5 (reviewed: Q969X5)
Alternative names: ER-Golgi intermediate compartment 32 kDa protein
All UniProt accessions (11): A0A8I5KPY8, A0A8I5KS17, Q969X5, A0A8I5KSL7, A0A8I5KUV7, A0A8I5KWW8, A0A8I5KXB6, A0A8I5KYT1, A0A8J8YV97, F2Z2P5, H0YAV2
UniProt curated annotations — full annotation on UniProt →
Function. Possible role in transport between endoplasmic reticulum and Golgi.
Subunit / interactions. May form a heteromeric complex composed of ERGIC1, ERGIC2 and ERGIC3. Within the complex, the interaction with ERGIC3 is direct. Interacts with ERGIC3/ERV46.
Subcellular location. Endoplasmic reticulum membrane. Endoplasmic reticulum-Golgi intermediate compartment membrane. Golgi apparatus membrane.
Post-translational modifications. N-glycosylated.
Disease relevance. Arthrogryposis multiplex congenita 2, neurogenic type (AMC2) [MIM:208100] A form of arthrogryposis multiplex congenita, a heterogeneous group of disorders characterized by multiple joint contractures resulting, in some cases, from reduced or absent fetal movements. AMC2 is due to a neurogenic defect and is characterized by congenital immobility of the limbs with fixation of multiple joints, and muscle wasting. AMC2 transmission pattern is consistent with autosomal recessive inheritance in several families. Penetrance may be incomplete in females. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the ERGIC family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q969X5-1 | 1 | yes |
| Q969X5-2 | 2 | |
| Q969X5-3 | 3 |
RefSeq proteins (1): NP_001026881* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR012936 | Erv_C | Domain |
| IPR039542 | Erv_N | Domain |
| IPR045888 | Erv | Family |
Pfam: PF07970, PF13850
UniProt features (13 total): splice variant 5, topological domain 3, transmembrane region 2, chain 1, sequence variant 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q969X5-F1 | 88.96 | 0.63 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (1): 74
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 275 (showing top):
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, TGACCTY_ERR1_Q2, GOBP_VESICLE_MEDIATED_TRANSPORT, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_ENDOPLASMIC_RETICULUM_TO_GOLGI_VESICLE_MEDIATED_TRANSPORT, GOCC_COATED_VESICLE, SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP, LEE_METASTASIS_AND_ALTERNATIVE_SPLICING_DN, SANSOM_APC_TARGETS_UP, MYB_Q3, CREBP1_01, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, AR_Q2, OSMAN_BLADDER_CANCER_DN
GO Biological Process (3): endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888), retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (GO:0006890), vesicle-mediated transport (GO:0016192)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (9): Golgi membrane (GO:0000139), nucleoplasm (GO:0005654), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), endoplasmic reticulum-Golgi intermediate compartment (GO:0005793), membrane (GO:0016020), COPII-coated ER to Golgi transport vesicle (GO:0030134), endoplasmic reticulum-Golgi intermediate compartment membrane (GO:0033116), Golgi apparatus (GO:0005794)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 4 |
| intracellular membrane-bounded organelle | 3 |
| Golgi vesicle transport | 2 |
| bounding membrane of organelle | 2 |
| cellular anatomical structure | 2 |
| endomembrane system | 2 |
| intercellular transport | 1 |
| intracellular transport | 1 |
| transport | 1 |
| cellular process | 1 |
| binding | 1 |
| Golgi apparatus | 1 |
| nuclear lumen | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| coated vesicle | 1 |
| endoplasmic reticulum-Golgi intermediate compartment | 1 |
Protein interactions and networks
STRING
2104 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ERGIC1 | SURF4 | O15260 | 934 |
| ERGIC1 | LMAN1 | P49257 | 857 |
| ERGIC1 | SURF2 | Q15527 | 714 |
| ERGIC1 | ARRDC3 | Q96B67 | 504 |
| ERGIC1 | LMAN2 | Q12907 | 472 |
| ERGIC1 | SURF1 | Q15526 | 469 |
| ERGIC1 | ALKAL2 | Q6UX46 | 444 |
| ERGIC1 | SEC22B | O75396 | 404 |
| ERGIC1 | EPDR1 | Q9UM22 | 365 |
| ERGIC1 | SSR3 | Q9UNL2 | 359 |
| ERGIC1 | CRYBG1 | Q9Y4K1 | 357 |
| ERGIC1 | CCDC71 | Q8IV32 | 356 |
| ERGIC1 | AMZ1 | Q400G9 | 353 |
| ERGIC1 | YARS1 | P54577 | 352 |
| ERGIC1 | MAP6 | Q96JE9 | 349 |
IntAct
84 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| nef | ACOT8 | psi-mi:“MI:0914”(association) | 0.710 |
| B3GNT3 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.670 |
| rep | AP2A2 | psi-mi:“MI:0914”(association) | 0.660 |
| ERGIC3 | ERGIC1 | psi-mi:“MI:0915”(physical association) | 0.620 |
| ERGIC1 | ERGIC3 | psi-mi:“MI:0915”(physical association) | 0.620 |
| ERGIC3 | ERGIC1 | psi-mi:“MI:0403”(colocalization) | 0.620 |
| ERGIC1 | ERGIC3 | psi-mi:“MI:0403”(colocalization) | 0.620 |
| EHHADH | ERGIC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLF11 | ERGIC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NUP58 | ERGIC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FLVCR1 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.530 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| CTR9 | POLR2B | psi-mi:“MI:0914”(association) | 0.350 |
| Cep78 | ING5 | psi-mi:“MI:0914”(association) | 0.350 |
| TFG | NCOA4 | psi-mi:“MI:0914”(association) | 0.350 |
| Smchd1 | SETD1A | psi-mi:“MI:0914”(association) | 0.350 |
| SYN1 | LUC7L3 | psi-mi:“MI:0914”(association) | 0.350 |
| PRPF4 | psi-mi:“MI:0914”(association) | 0.350 | |
| Tp53bp1 | WBP2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (327): ERGIC1 (Affinity Capture-MS), INA (Affinity Capture-MS), EFNB1 (Affinity Capture-MS), ERGIC1 (Co-fractionation), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS), ERGIC1 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8F5J9, A0JN27, F1LTR1, F1NBL0, O15294, P35438, P35439, P56558, P61201, P61202, P61203, P61599, P61600, P63138, P79101, P81436, Q03555, Q05586, Q13888, Q15303, Q27HV0, Q2PFM2, Q2TBV5, Q4L208, Q58ED9, Q5R1P0, Q5SP67, Q5ZJ75, Q61527, Q62956, Q6IQT4, Q6IR75, Q6P1K8, Q6P632, Q7ZXR3, Q8BUV3, Q8C6G8, Q8CGY8, Q8R4D1, Q91854
Diamond homologs: Q4R8X1, Q4V8Y6, Q5EAE0, Q5R8G3, Q66KH2, Q6NS19, Q6NVS2, Q803I2, Q969X5, Q9CQE7, Q9DC16, Q9LJU2, Q9T042, Q9Y282, D3Z6P0, D4B2L8, O13811, O22263, O48773, P04785, P05307, P07237, P08003, P09102, P09103, P13667, P17967, P21195, P27773, P29828, P30101, P32474, P34329, P38657, P38658, P38659, P38660, P52588, P52589, P54399
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ERGIC1 | “up-regulates quantity by stabilization” | ERGIC3 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 94 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | 5 | 21.1× | 1e-03 |
| endoplasmic reticulum to Golgi vesicle-mediated transport | 8 | 13.6× | 7e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
55 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 1 |
| Uncertain significance | 30 |
| Likely benign | 6 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1012274 | NC_000005.9:g.172252136_172274628del | Pathogenic |
| 523093 | NM_001031711.3(ERGIC1):c.293T>A (p.Val98Glu) | Pathogenic |
| 816810 | NM_001031711.3(ERGIC1):c.782G>A (p.Gly261Asp) | Likely pathogenic |
SpliceAI
2051 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:172834430:GGAG:G | donor_gain | 1.0000 |
| 5:172834431:G:GT | donor_gain | 1.0000 |
| 5:172834431:GAGGT:G | donor_loss | 1.0000 |
| 5:172834434:GTGA:G | donor_loss | 1.0000 |
| 5:172888758:TTA:T | donor_gain | 1.0000 |
| 5:172888759:TA:T | donor_gain | 1.0000 |
| 5:172888761:G:GG | donor_gain | 1.0000 |
| 5:172897000:A:AG | acceptor_gain | 1.0000 |
| 5:172897001:G:GA | acceptor_gain | 1.0000 |
| 5:172897070:GAAGT:G | donor_gain | 1.0000 |
| 5:172897071:AAGT:A | donor_gain | 1.0000 |
| 5:172897071:AAGTG:A | donor_loss | 1.0000 |
| 5:172897073:GT:G | donor_gain | 1.0000 |
| 5:172897074:TG:T | donor_loss | 1.0000 |
| 5:172897075:G:GA | donor_loss | 1.0000 |
| 5:172897075:G:GG | donor_gain | 1.0000 |
| 5:172897076:TAA:T | donor_loss | 1.0000 |
| 5:172909662:CCTAG:C | acceptor_loss | 1.0000 |
| 5:172909663:CTAG:C | acceptor_loss | 1.0000 |
| 5:172909665:A:AG | acceptor_gain | 1.0000 |
| 5:172909665:A:G | acceptor_loss | 1.0000 |
| 5:172909665:AGT:A | acceptor_gain | 1.0000 |
| 5:172909666:G:GA | acceptor_gain | 1.0000 |
| 5:172909666:GT:G | acceptor_gain | 1.0000 |
| 5:172909666:GTG:G | acceptor_gain | 1.0000 |
| 5:172909666:GTGT:G | acceptor_gain | 1.0000 |
| 5:172909757:CGAGT:C | donor_gain | 1.0000 |
| 5:172909758:GAGT:G | donor_gain | 1.0000 |
| 5:172909758:GAGTG:G | donor_gain | 1.0000 |
| 5:172909760:GT:G | donor_gain | 1.0000 |
AlphaMissense
1937 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:172888731:T:C | L18P | 1.000 |
| 5:172909684:T:A | V58D | 1.000 |
| 5:172909755:T:A | C82S | 1.000 |
| 5:172909755:T:C | C82R | 1.000 |
| 5:172909756:G:A | C82Y | 1.000 |
| 5:172909756:G:C | C82S | 1.000 |
| 5:172909756:G:T | C82F | 1.000 |
| 5:172914726:A:C | D88A | 1.000 |
| 5:172914726:A:T | D88V | 1.000 |
| 5:172914734:G:C | D91H | 1.000 |
| 5:172914735:A:C | D91A | 1.000 |
| 5:172914735:A:T | D91V | 1.000 |
| 5:172914806:T:A | C115S | 1.000 |
| 5:172914806:T:C | C115R | 1.000 |
| 5:172914807:G:A | C115Y | 1.000 |
| 5:172914807:G:C | C115S | 1.000 |
| 5:172914808:C:G | C115W | 1.000 |
| 5:172924011:G:C | G128R | 1.000 |
| 5:172924011:G:T | G128C | 1.000 |
| 5:172924012:G:A | G128D | 1.000 |
| 5:172924012:G:T | G128V | 1.000 |
| 5:172924016:C:A | N129K | 1.000 |
| 5:172924016:C:G | N129K | 1.000 |
| 5:172924018:T:C | F130S | 1.000 |
| 5:172924020:C:G | H131D | 1.000 |
| 5:172924026:T:C | S133P | 1.000 |
| 5:172935237:T:C | F231S | 1.000 |
| 5:172935264:T:A | V240D | 1.000 |
| 5:172950712:T:C | C257R | 1.000 |
| 5:172950716:C:A | A258D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000027051 (5:172879486 T>C), RS1000031061 (5:172842298 T>A), RS1000050160 (5:172905417 C>T), RS1000135550 (5:172880706 C>T), RS1000176856 (5:172928093 G>A), RS1000193448 (5:172847609 G>A,T), RS1000194569 (5:172888022 C>A), RS1000262620 (5:172845035 G>A), RS1000279288 (5:172910709 G>C), RS1000281562 (5:172922821 G>A), RS1000346574 (5:172833679 C>G,T), RS1000374961 (5:172891252 T>C), RS1000398250 (5:172839283 T>A), RS1000431516 (5:172918191 C>A), RS1000437690 (5:172878529 C>A,T)
Disease associations
OMIM: gene MIM:617946 | disease phenotypes: MIM:617468, MIM:208100
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| arthrogryposis multiplex congenita 2, neurogenic type | Strong | Autosomal recessive |
Mondo (2): arthrogryposis multiplex congenita (MONDO:0015168), arthrogryposis multiplex congenita 2, neurogenic type (MONDO:0008823)
Orphanet (2): Arthrogryposis multiplex congenita (Orphanet:1037), Neurogenic arthrogryposis multiplex congenita (Orphanet:1143)
HPO phenotypes
40 total (30 of 40 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0001239 | Wrist flexion contracture |
| HP:0001284 | Areflexia |
| HP:0001357 | Plagiocephaly |
| HP:0001371 | Flexion contracture |
| HP:0001558 | Decreased fetal movement |
| HP:0001562 | Oligohydramnios |
| HP:0001623 | Breech presentation |
| HP:0001627 | Abnormal heart morphology |
| HP:0001762 | Talipes equinovarus |
| HP:0001838 | Rocker bottom foot |
| HP:0002058 | Myopathic facies |
| HP:0002098 | Respiratory distress |
| HP:0002380 | Fasciculations |
| HP:0002650 | Scoliosis |
| HP:0002747 | Respiratory insufficiency due to muscle weakness |
| HP:0002803 | Congenital contracture |
| HP:0002804 | Arthrogryposis multiplex congenita |
| HP:0002827 | Hip dislocation |
| HP:0002987 | Elbow flexion contracture |
| HP:0003198 | Myopathy |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003273 | Hip contracture |
| HP:0003444 | EMG: chronic denervation signs |
| HP:0003484 | Upper limb muscle weakness |
| HP:0003577 | Congenital onset |
| HP:0006380 | Knee flexion contracture |
| HP:0006466 | Ankle flexion contracture |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001999_8 | Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel) | 8.000000e-06 |
| GCST002126_10 | Periodontitis (CDC/AAP) | 5.000000e-06 |
| GCST004131_123 | Inflammatory bowel disease | 2.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C536614 | Arthrogryposis multiplex congenita neurogenic type (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067275 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, decreases expression, increases expression | 3 |
| bisphenol A | affects expression, affects cotreatment, decreases methylation | 2 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation, decreases expression | 2 |
| Hydrogen Peroxide | affects expression, affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Valproic Acid | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| arsenite | decreases methylation | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | decreases expression | 1 |
| clothianidin | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Butyrophenones | affects response to substance | 1 |
| Cuprizone | affects cotreatment, increases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651373 | Binding | Binding affinity to human ERGIC1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
4 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05393375 | Not specified | COMPLETED | Arthrogryposis Multiplex Congenita in Pediatric Age: Correlation Between MUScular MRI and Functional Evaluation |
| NCT05673265 | Not specified | UNKNOWN | Pediatric and Adult Registry for Patients With ARThrogryposis |
| NCT06130592 | Not specified | UNKNOWN | Technical Feasibility Study of Ultrasound Muscle Imaging in Antenatal Ultrasound |
| NCT07360574 | Not specified | NOT_YET_RECRUITING | Piezo2-related Arthrogryposis & physiopathOLOgy 3 |
Related Atlas pages
- Associated diseases: arthrogryposis multiplex congenita 2, neurogenic type
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arthrogryposis multiplex congenita, arthrogryposis multiplex congenita 2, neurogenic type