ERI3-IT1

Summary

ERI3-IT1 (ERI3 intronic transcript 1, HGNC:41431) is a long non-coding RNA gene on chromosome 1p34.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41431
Approved symbol	ERI3-IT1
Name	ERI3 intronic transcript 1
Location	1p34.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233602
Ensembl biotype	lncRNA
Entrez	100874278
RNAcentral	URS000075D945 — lncRNA, 661 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000414156

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414156 — 2 exons

Exon	Start	End
ENSE00001601275	44243408	44243997
ENSE00001724618	44244245	44244273

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 99.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0195 / max 15.6764, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
12069	0.0195	4

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	99.85	gold quality
corpus callosum	UBERON:0002336	69.46	gold quality
skeletal muscle tissue	UBERON:0001134	66.28	gold quality
bone marrow cell	CL:0002092	65.94	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.93	gold quality
stromal cell of endometrium	CL:0002255	63.93	gold quality
ganglionic eminence	UBERON:0004023	63.39	gold quality
colonic epithelium	UBERON:0000397	63.25	silver quality
adrenal tissue	UBERON:0018303	63.18	gold quality
sural nerve	UBERON:0015488	63.07	silver quality
tonsil	UBERON:0002372	62.13	gold quality
bone marrow	UBERON:0002371	61.01	gold quality
vermiform appendix	UBERON:0001154	59.30	gold quality
duodenum	UBERON:0002114	58.28	gold quality
calcaneal tendon	UBERON:0003701	58.15	gold quality
liver	UBERON:0002107	58.10	gold quality
rectum	UBERON:0001052	56.65	gold quality
urinary bladder	UBERON:0001255	55.90	gold quality
prefrontal cortex	UBERON:0000451	55.81	gold quality
gall bladder	UBERON:0002110	55.79	gold quality
myometrium	UBERON:0001296	55.70	gold quality
ovary	UBERON:0000992	55.14	gold quality
lymph node	UBERON:0000029	55.06	gold quality
monocyte	CL:0000576	54.95	gold quality
blood	UBERON:0000178	54.75	gold quality
left ovary	UBERON:0002119	54.63	gold quality
body of uterus	UBERON:0009853	54.53	gold quality
right testis	UBERON:0004534	54.27	gold quality
popliteal artery	UBERON:0002250	54.25	gold quality
right ovary	UBERON:0002118	54.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.