ERMAP
gene geneOn this page
Also known as BTN5
Summary
ERMAP (erythroblast membrane associated protein (Scianna blood group), HGNC:15743) is a protein-coding gene on chromosome 1p34.2, encoding Erythroid membrane-associated protein (Q96PL5). Possible role as a cell-adhesion or receptor molecule of erythroid cells.
The protein encoded by this gene is a cell surface transmembrane protein that may act as an erythroid cell receptor, possibly as a mediator of cell adhesion. Polymorphisms in this gene are responsible for the Scianna/Radin blood group system. Two transcript variants encoding the same protein have been found for this gene.
Source: NCBI Gene 114625 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 82 total — 1 pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_001017922
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15743 |
| Approved symbol | ERMAP |
| Name | erythroblast membrane associated protein (Scianna blood group) |
| Location | 1p34.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | BTN5 |
| Ensembl gene | ENSG00000164010 |
| Ensembl biotype | protein_coding |
| OMIM | 609017 |
| Entrez | 114625 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 16 protein_coding, 4 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000328249, ENST00000372514, ENST00000372517, ENST00000470938, ENST00000487556, ENST00000642150, ENST00000643061, ENST00000645239, ENST00000647120, ENST00000881413, ENST00000881414, ENST00000881415, ENST00000881416, ENST00000881417, ENST00000881418, ENST00000881419, ENST00000881420, ENST00000968886, ENST00000968887, ENST00000968888, ENST00000968889, ENST00000968890
RefSeq mRNA: 2 — MANE Select: NM_001017922
NM_001017922, NM_018538
CCDS: CCDS475
Canonical transcript exons
ENST00000372517 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001143920 | 42835732 | 42835764 |
| ENSE00001252486 | 42830768 | 42831115 |
| ENSE00001358815 | 42830444 | 42830533 |
| ENSE00001434201 | 42825623 | 42825738 |
| ENSE00003468772 | 42840152 | 42840178 |
| ENSE00003477127 | 42840033 | 42840053 |
| ENSE00003606936 | 42838901 | 42838921 |
| ENSE00003617143 | 42840270 | 42840296 |
| ENSE00003645818 | 42835038 | 42835154 |
| ENSE00003656764 | 42837158 | 42837190 |
| ENSE00003686058 | 42842517 | 42844991 |
| ENSE00003822746 | 42817122 | 42817253 |
Expression profiles
Bgee: expression breadth ubiquitous, 199 present calls, max score 87.16.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.5488 / max 452.5441, expressed in 1743 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 2475 | 4.8946 | 1722 |
| 2479 | 0.9534 | 82 |
| 2477 | 0.4335 | 58 |
| 2478 | 0.1747 | 51 |
| 2476 | 0.0926 | 35 |
Top tissues by expression
261 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 87.16 | gold quality |
| mononuclear cell | CL:0000842 | 86.82 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 86.52 | silver quality |
| leukocyte | CL:0000738 | 86.51 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 85.42 | gold quality |
| right adrenal gland | UBERON:0001233 | 84.77 | gold quality |
| right lobe of liver | UBERON:0001114 | 84.60 | gold quality |
| stromal cell of endometrium | CL:0002255 | 84.49 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.77 | gold quality |
| granulocyte | CL:0000094 | 83.69 | gold quality |
| left adrenal gland | UBERON:0001234 | 83.68 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 83.27 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 83.15 | gold quality |
| adrenal tissue | UBERON:0018303 | 82.90 | gold quality |
| body of pancreas | UBERON:0001150 | 82.88 | gold quality |
| rectum | UBERON:0001052 | 82.64 | gold quality |
| bone marrow | UBERON:0002371 | 82.29 | gold quality |
| tendon | UBERON:0000043 | 82.26 | gold quality |
| adrenal gland | UBERON:0002369 | 82.23 | gold quality |
| adrenal cortex | UBERON:0001235 | 82.20 | gold quality |
| adenohypophysis | UBERON:0002196 | 82.14 | gold quality |
| pituitary gland | UBERON:0000007 | 81.96 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 81.62 | gold quality |
| gall bladder | UBERON:0002110 | 81.61 | gold quality |
| pancreas | UBERON:0001264 | 81.42 | gold quality |
| mucosa of stomach | UBERON:0001199 | 81.07 | gold quality |
| calcaneal tendon | UBERON:0003701 | 80.97 | gold quality |
| metanephros cortex | UBERON:0010533 | 80.90 | gold quality |
| thyroid gland | UBERON:0002046 | 80.80 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.58 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 45.05 |
| E-ANND-3 | yes | 4.54 |
| E-MTAB-9067 | no | 4.38 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): IRX1
miRNA regulators (miRDB)
78 targeting ERMAP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-3659 | 99.70 | 67.97 | 694 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
Literature-anchored findings (GeneRIF, showing 8)
- ERMAP, a unique member of the B30.2 domain protein family, is expressed in erythroid cells in fetal liver, adult bone marrow, reticulocytes and in circulating erythroblasts in 8-12-week fetal cord blood. (PMID:11549310)
- A human cDNA and gene encoding for human ERMAP is cloned and characterized. The protein is sequenced and its expression analyzed. (PMID:11783959)
- DNA sequencing demonstrates Scianna antigens including Rd are expressed by ERMAP. (PMID:12393480)
- The human ermap gene plays an important role in differentiation and development of erythroid cells. (PMID:18426659)
- the five known probands with the SC*994C>T silencing nucleotide change were from the Pacific Islands. (PMID:24094239)
- Through molecular genotyping we also identified polymorphisms in RhCE, Kell, Duffy, Colton, Lutheran and Scianna loci in donors and patients. (PMID:25582271)
- ERMAP is a B7 family-related molecule that negatively regulates T cell and macrophage responses. (PMID:32620788)
- The ligation between ERMAP, galectin-9 and dectin-2 promotes Kupffer cell phagocytosis and antitumor immunity. (PMID:37813965)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ermap | ENSMUSG00000028644 |
| rattus_norvegicus | Ermap | ENSRNOG00000000335 |
| rattus_norvegicus | Zfp691 | ENSRNOG00000007398 |
Paralogs (15): BTN3A1 (ENSG00000026950), CD276 (ENSG00000103855), BTN3A3 (ENSG00000111801), BTN2A1 (ENSG00000112763), BTNL8 (ENSG00000113303), HHLA2 (ENSG00000114455), BTN2A2 (ENSG00000124508), BTN1A1 (ENSG00000124557), VTCN1 (ENSG00000134258), ICOSLG (ENSG00000160223), BTNL9 (ENSG00000165810), BTNL3 (ENSG00000168903), BTN3A2 (ENSG00000186470), BTNL2 (ENSG00000204290), MOG (ENSG00000204655)
Protein
Protein identifiers
Erythroid membrane-associated protein — Q96PL5 (reviewed: Q96PL5)
Alternative names: Radin blood group antigen, Scianna blood group antigen
All UniProt accessions (3): A0A1C9HIH9, A0A2R8YH65, Q96PL5
UniProt curated annotations — full annotation on UniProt →
Function. Possible role as a cell-adhesion or receptor molecule of erythroid cells.
Subcellular location. Cell membrane. Cytoplasm.
Tissue specificity. Expressed in erythroid-enriched bone marrow (at protein level). Highly expressed in bone marrow and to a lower extent in leukocytes, thymus, lymph node and spleen.
Post-translational modifications. Glycosylated.
Polymorphism. ERMAP is responsible for the Scianna/Radin blood group system which comprises seven different antigens. The Sc1 and Sc2 antigens are resulting from a single variation in position 57; Arg-57 corresponds to the Sc2 antigen and Gly-57 to the Sc1 antigen. The Sc2 antigen is rare with an occurrence of less than 1% in the population while Sc1 is more frequent. Sc3 is not expressed by individuals homozygous for a null allele encoding a truncated protein lacking its extracellular part (Sc-3). The Sc4 antigen corresponding to the previously defined Radin blood group antigen (Rd) is due to a single variation in position 60; Ala-60 corresponds to Sc4/Rd(+), the antigenic form of the protein. Sc4 is found in less than 1% of the population. Sc5/STAR, Sc6/SCER and Sc7/SCAN antigens are due to single variations in positions 47, 81 and 35 respectively. Alloantibodies to the low frequency Sc2 and Sc4 antigens are the cause of hemolytic disease in the newborn.
Similarity. Belongs to the immunoglobulin superfamily. BTN/MOG family.
RefSeq proteins (2): NP_001017922, NP_061008 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001870 | B30.2/SPRY | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR003877 | SPRY_dom | Domain |
| IPR003879 | Butyrophylin_SPRY | Domain |
| IPR006574 | PRY | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR043136 | B30.2/SPRY_sf | Homologous_superfamily |
| IPR050143 | TRIM/RBCC | Family |
Pfam: PF00622, PF07686, PF13765
UniProt features (22 total): sequence variant 11, topological domain 2, domain 2, signal peptide 1, chain 1, sequence conflict 1, transmembrane region 1, modified residue 1, glycosylation site 1, disulfide bond 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96PL5-F1 | 82.22 | 0.59 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 418
Disulfide bonds (1): 50–126
Glycosylation sites (1): 132
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 98 (showing top):
GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, GOCC_CELL_SURFACE, GNF2_ANK1, NKX61_01, MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_CYTOKINE_PRODUCTION, chr1p34, GNF2_SPTA1, GOBP_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GNF2_PCAF, GOMF_SIGNALING_RECEPTOR_BINDING, GNF2_MAP2K3
GO Biological Process (2): regulation of cytokine production (GO:0001817), T cell receptor signaling pathway (GO:0050852)
GO Molecular Function (2): signaling receptor binding (GO:0005102), protein binding (GO:0005515)
GO Cellular Component (6): Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cytoplasm (GO:0005737), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cytoplasm | 2 |
| cytokine production | 1 |
| regulation of gene expression | 1 |
| regulation of multicellular organismal process | 1 |
| antigen receptor-mediated signaling pathway | 1 |
| protein binding | 1 |
| binding | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cell surface | 1 |
| side of membrane | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
782 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ERMAP | XDH | P47989 | 969 |
| ERMAP | PLIN2 | Q99541 | 923 |
| ERMAP | TECR | Q9NZ01 | 918 |
| ERMAP | MFGE8 | Q08431 | 782 |
| ERMAP | MUC1 | P13931 | 598 |
| ERMAP | LTF | P02788 | 585 |
| ERMAP | GOT2 | P00505 | 551 |
| ERMAP | MUC15 | Q8N387 | 521 |
| ERMAP | CIDEA | O60543 | 511 |
| ERMAP | PGM1 | P36871 | 508 |
| ERMAP | AASDH | Q4L235 | 471 |
| ERMAP | OMG | P23515 | 470 |
| ERMAP | CD1B | P29016 | 456 |
| ERMAP | SLC14A1 | Q13336 | 452 |
| ERMAP | SLC4A1 | P02730 | 448 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TMEM14A | ERMAP | psi-mi:“MI:0915”(physical association) | 0.560 |
| EMD | ERMAP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ERMAP | KRTAP3-3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LEMD1 | ERMAP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ERMAP | TMEM14A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ERMAP | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| ERMAP | PCNA | psi-mi:“MI:0915”(physical association) | 0.370 |
| CFTR | ERMAP | psi-mi:“MI:0915”(physical association) | 0.370 |
| ERMAP | NRDC | psi-mi:“MI:0914”(association) | 0.350 |
| ERMAP | KRTAP3-3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LEMD1 | ERMAP | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (36): MECOM (Affinity Capture-MS), FAM199X (Affinity Capture-MS), DOCK4 (Affinity Capture-MS), USP34 (Affinity Capture-MS), ELMO2 (Affinity Capture-MS), CWC22 (Affinity Capture-MS), AP3B1 (Affinity Capture-MS), ZC3H18 (Affinity Capture-MS), GEMIN2 (Affinity Capture-MS), AKAP11 (Affinity Capture-MS), CDC73 (Affinity Capture-MS), UBR4 (Affinity Capture-MS), PRKAR1B (Affinity Capture-MS), ERMAP (Synthetic Lethality), ERMAP (Two-hybrid)
ESM2 similar proteins: A0A0E4BZH1, A4QPC6, A7TZE6, A8K4G0, A8MVZ5, O00478, O00481, O00635, O70355, O75677, O75679, P14373, P18892, P19474, P55803, P78410, Q13410, Q1XHU0, Q3ZEE5, Q58DK8, Q5BN31, Q5C8U1, Q5D7H8, Q5D7I0, Q5D7I2, Q5D7I3, Q5D7I5, Q5D7J2, Q5R7W8, Q5R996, Q61885, Q62158, Q62191, Q62556, Q6MFZ5, Q6MG97, Q6UX41, Q6UXE8, Q6UXG8, Q7KYR7
Diamond homologs: A0A0E4BZH1, A4QPC6, A7TZE6, A7TZF0, A7TZF3, A7TZG1, A7TZG3, A7XUX6, A7XUY5, A7XUZ6, A7XV04, A7XV07, A7XV14, A8MVZ5, O00478, O00481, O70355, P18892, P55803, P78410, Q13410, Q16653, Q29ZQ1, Q5R7W8, Q5R960, Q5R996, Q61885, Q62556, Q63345, Q6MG97, Q6UX41, Q6UXE8, Q6UXG8, Q7KYR7, Q7TST0, Q8BJE2, Q8WVV5, Q96KV6, Q96PL5, Q9BGS7
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| IRX1 | “up-regulates quantity by expression” | ERMAP | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
82 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 54 |
| Likely benign | 6 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1915 | NM_001017922.2(ERMAP):c.307_308del (p.Asp103fs) | Pathogenic |
SpliceAI
1942 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:42817210:G:GT | donor_gain | 1.0000 |
| 1:42817251:A:T | donor_gain | 1.0000 |
| 1:42842515:A:AG | acceptor_gain | 1.0000 |
| 1:42842515:AGT:A | acceptor_gain | 1.0000 |
| 1:42842516:G:GG | acceptor_gain | 1.0000 |
| 1:42842516:GT:G | acceptor_gain | 1.0000 |
| 1:42842516:GTG:G | acceptor_gain | 1.0000 |
| 1:42817179:G:GT | donor_gain | 0.9900 |
| 1:42817249:G:GT | donor_gain | 0.9900 |
| 1:42817249:GGAGG:G | donor_gain | 0.9900 |
| 1:42817250:G:GT | donor_gain | 0.9900 |
| 1:42817250:G:T | donor_gain | 0.9900 |
| 1:42817252:GG:G | donor_gain | 0.9900 |
| 1:42817253:GG:G | donor_gain | 0.9900 |
| 1:42817402:G:GT | donor_gain | 0.9900 |
| 1:42835730:A:AG | acceptor_gain | 0.9900 |
| 1:42835731:G:GG | acceptor_gain | 0.9900 |
| 1:42838978:GGA:G | donor_gain | 0.9900 |
| 1:42842512:TGCA:T | acceptor_loss | 0.9900 |
| 1:42842514:CAG:C | acceptor_loss | 0.9900 |
| 1:42842515:AGTG:A | acceptor_gain | 0.9900 |
| 1:42842516:G:GT | acceptor_loss | 0.9900 |
| 1:42842516:GTGG:G | acceptor_gain | 0.9900 |
| 1:42842516:GTGGC:G | acceptor_gain | 0.9900 |
| 1:42817250:GAGG:G | donor_gain | 0.9800 |
| 1:42838979:GA:G | donor_gain | 0.9800 |
| 1:42817210:G:T | donor_gain | 0.9700 |
| 1:42827666:G:GT | donor_gain | 0.9700 |
| 1:42831110:TTGC:T | donor_gain | 0.9700 |
| 1:42837156:A:AG | acceptor_gain | 0.9700 |
AlphaMissense
3057 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:42842717:T:A | W305R | 0.998 |
| 1:42842717:T:C | W305R | 0.998 |
| 1:42842630:T:C | F276L | 0.996 |
| 1:42842632:T:A | F276L | 0.996 |
| 1:42842632:T:G | F276L | 0.996 |
| 1:42842727:G:A | G308E | 0.995 |
| 1:42842556:T:C | L251P | 0.994 |
| 1:42842645:A:C | S281R | 0.994 |
| 1:42842647:C:A | S281R | 0.994 |
| 1:42842647:C:G | S281R | 0.994 |
| 1:42842687:T:A | W295R | 0.994 |
| 1:42842687:T:C | W295R | 0.994 |
| 1:42842726:G:A | G308R | 0.994 |
| 1:42842726:G:C | G308R | 0.994 |
| 1:42842727:G:T | G308V | 0.993 |
| 1:42842734:T:G | C310W | 0.993 |
| 1:42842689:G:C | W295C | 0.992 |
| 1:42842689:G:T | W295C | 0.992 |
| 1:42830877:G:C | W65C | 0.991 |
| 1:42830877:G:T | W65C | 0.991 |
| 1:42842547:A:G | H248R | 0.991 |
| 1:42842889:T:C | L362P | 0.991 |
| 1:42842719:G:C | W305C | 0.990 |
| 1:42842719:G:T | W305C | 0.990 |
| 1:42842879:G:T | G359W | 0.990 |
| 1:42831020:T:C | I113T | 0.989 |
| 1:42842789:T:A | W329R | 0.989 |
| 1:42842789:T:C | W329R | 0.989 |
| 1:42842799:G:C | R332P | 0.989 |
| 1:42842752:G:C | R316S | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000119763 (1:42817601 C>A,T), RS1000192285 (1:42821343 T>C), RS1000193435 (1:42818031 A>G), RS1000296382 (1:42829380 G>A), RS1000526226 (1:42842642 G>A), RS1000763119 (1:42824964 G>C), RS1000807058 (1:42835874 A>G,T), RS1000892530 (1:42845194 A>G), RS1000941393 (1:42845350 T>C), RS1000977241 (1:42816218 C>A,T), RS1001133127 (1:42823567 T>C), RS1001133713 (1:42826707 T>C), RS1001382542 (1:42832880 G>C,T), RS1001491542 (1:42815510 C>T), RS1001685252 (1:42830143 C>T)
Disease associations
OMIM: gene MIM:609017 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0010701 | Abnormal circulating immunoglobulin concentration |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008473_12 | Visceral fat | 6.000000e-06 |
| GCST90002404_462 | Red cell distribution width | 1.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009188 | Red cell distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, decreases methylation | 5 |
| bisphenol A | affects cotreatment, increases methylation, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| trichostatin A | affects expression | 1 |
| butyraldehyde | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| belinostat | decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation, decreases methylation | 1 |
| Aldehydes | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Sodium Dodecyl Sulfate | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.