ERRFI1-DT

Summary

ERRFI1-DT (ERRFI1 divergent transcript, HGNC:55646) is a long non-coding RNA gene on chromosome 1p36.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55646
Approved symbol	ERRFI1-DT
Name	ERRFI1 divergent transcript
Location	1p36.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238290
Ensembl biotype	lncRNA
Entrez	121832806
RNAcentral	URS00026A2486 — lncRNA, 6657 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000445300, ENST00000777651, ENST00000777652, ENST00000777653, ENST00000777654, ENST00000777655, ENST00000777656, ENST00000777657, ENST00000777658, ENST00000777659, ENST00000777660, ENST00000777661, ENST00000777662, ENST00000777663, ENST00000777664, ENST00000777665, ENST00000777666, ENST00000777667, ENST00000777668, ENST00000777669, ENST00000777670, ENST00000777671, ENST00000777672, ENST00000777673, ENST00000777675

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445300 — 3 exons

Exon	Start	End
ENSE00001607166	8029227	8029357
ENSE00004146534	8026705	8027421
ENSE00004146561	8121474	8122702

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 77.61.

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.61	gold quality
liver	UBERON:0002107	60.83	gold quality
mucosa of stomach	UBERON:0001199	60.20	gold quality
cortical plate	UBERON:0005343	59.72	silver quality
right lobe of liver	UBERON:0001114	59.36	gold quality
ventricular zone	UBERON:0003053	58.75	silver quality
ganglionic eminence	UBERON:0004023	57.75	gold quality
skeletal muscle tissue	UBERON:0001134	56.81	silver quality
popliteal artery	UBERON:0002250	55.80	gold quality
tibial artery	UBERON:0007610	55.77	gold quality
lower esophagus muscularis layer	UBERON:0035833	55.56	gold quality
lower esophagus	UBERON:0013473	55.42	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	55.29	gold quality
muscle tissue	UBERON:0002385	54.69	silver quality
hindlimb stylopod muscle	UBERON:0004252	54.53	silver quality
thyroid gland	UBERON:0002046	53.28	gold quality
left lobe of thyroid gland	UBERON:0001120	52.79	gold quality
ascending aorta	UBERON:0001496	52.75	gold quality
stromal cell of endometrium	CL:0002255	52.54	silver quality
thoracic aorta	UBERON:0001515	52.14	gold quality
esophagus	UBERON:0001043	51.80	gold quality
lymph node	UBERON:0000029	51.49	gold quality
right lobe of thyroid gland	UBERON:0001119	51.14	gold quality
calcaneal tendon	UBERON:0003701	50.94	silver quality
muscle of leg	UBERON:0001383	50.79	gold quality
cortex of kidney	UBERON:0001225	50.65	gold quality
gastrocnemius	UBERON:0001388	50.40	gold quality
monocyte	CL:0000576	50.37	silver quality
duodenum	UBERON:0002114	50.35	gold quality
testis	UBERON:0000473	49.66	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.