ESF1
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Also known as bA526K24.1
Summary
ESF1 (ESF1 nucleolar pre-rRNA processing protein, HGNC:15898) is a protein-coding gene on chromosome 20p12.1, encoding ESF1 homolog (Q9H501). May constitute a novel regulatory system for basal transcription. It is a selective cancer dependency (DepMap: 88.9% of cell lines).
Enables RNA binding activity. Predicted to be involved in rRNA processing. Located in extracellular space.
Source: NCBI Gene 51575 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 138 total
- Cancer dependency (DepMap): dependent in 88.9% of screened cell lines
- MANE Select transcript:
NM_001276380
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15898 |
| Approved symbol | ESF1 |
| Name | ESF1 nucleolar pre-rRNA processing protein |
| Location | 20p12.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | bA526K24.1 |
| Ensembl gene | ENSG00000089048 |
| Ensembl biotype | protein_coding |
| OMIM | 618765 |
| Entrez | 51575 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 10 protein_coding
ENST00000202816, ENST00000617257, ENST00000874578, ENST00000874579, ENST00000919901, ENST00000919902, ENST00000919903, ENST00000919904, ENST00000942288, ENST00000942289
RefSeq mRNA: 2 — MANE Select: NM_001276380
NM_001276380, NM_016649
CCDS: CCDS13117
Canonical transcript exons
ENST00000617257 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000659759 | 13733721 | 13733842 |
| ENSE00000659760 | 13759692 | 13759853 |
| ENSE00000659761 | 13766777 | 13766924 |
| ENSE00000659762 | 13769907 | 13770021 |
| ENSE00000659764 | 13771331 | 13771483 |
| ENSE00000659765 | 13772515 | 13772615 |
| ENSE00000659766 | 13775157 | 13775270 |
| ENSE00000659767 | 13775873 | 13776270 |
| ENSE00000859132 | 13728378 | 13728465 |
| ENSE00000990127 | 13718908 | 13718984 |
| ENSE00000990128 | 13717368 | 13717514 |
| ENSE00001214762 | 13782504 | 13783183 |
| ENSE00003910380 | 13714325 | 13715167 |
| ENSE00003912821 | 13784880 | 13784919 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 99.39.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.3590 / max 559.7910, expressed in 1585 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 186470 | 6.5177 | 1552 |
| 186468 | 0.6278 | 253 |
| 186469 | 0.2134 | 69 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 99.39 | gold quality |
| sperm | CL:0000019 | 97.70 | gold quality |
| buccal mucosa cell | CL:0002336 | 96.86 | gold quality |
| cranial nerve II | UBERON:0000941 | 96.58 | gold quality |
| oocyte | CL:0000023 | 96.50 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 95.44 | gold quality |
| medial globus pallidus | UBERON:0002477 | 95.03 | gold quality |
| tendon | UBERON:0000043 | 94.96 | gold quality |
| globus pallidus | UBERON:0001875 | 94.86 | gold quality |
| calcaneal tendon | UBERON:0003701 | 94.78 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 94.56 | gold quality |
| male germ cell | CL:0000015 | 94.31 | gold quality |
| visceral pleura | UBERON:0002401 | 94.20 | gold quality |
| sural nerve | UBERON:0015488 | 93.96 | gold quality |
| parietal pleura | UBERON:0002400 | 93.44 | gold quality |
| tibia | UBERON:0000979 | 93.29 | gold quality |
| pericardium | UBERON:0002407 | 93.13 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 92.85 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 92.48 | gold quality |
| pleura | UBERON:0000977 | 92.13 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 91.60 | gold quality |
| blood vessel layer | UBERON:0004797 | 91.54 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 91.39 | gold quality |
| mammary duct | UBERON:0001765 | 91.37 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 91.22 | gold quality |
| medulla oblongata | UBERON:0001896 | 91.21 | gold quality |
| hair follicle | UBERON:0002073 | 91.19 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 90.96 | gold quality |
| pons | UBERON:0000988 | 90.92 | gold quality |
| corpus callosum | UBERON:0002336 | 90.81 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.59 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
48 targeting ESF1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-652-5P | 99.91 | 67.49 | 505 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 88.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 2)
- The Rattus rattus ABT1-associated protein formed a complex with ABT1 and suppressed activation of Pol II-directed transcription in mammalian cells. It binds and negatively regulates ABT1. (PMID:15660422)
- Human RPF1 and ESF1 in Pre-rRNA Processing and the Assembly of Pre-Ribosomal Particles: A Functional Study. (PMID:38391939)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | esf1 | ENSDARG00000008740 |
| mus_musculus | Esf1 | ENSMUSG00000045624 |
| rattus_norvegicus | Esf1 | ENSRNOG00000004777 |
| drosophila_melanogaster | CG11417 | FBGN0024364 |
| caenorhabditis_elegans | WBGENE00010231 |
Protein
Protein identifiers
ESF1 homolog — Q9H501 (reviewed: Q9H501)
Alternative names: ABT1-associated protein
All UniProt accessions (2): Q9H501, A0A087WX71
UniProt curated annotations — full annotation on UniProt →
Function. May constitute a novel regulatory system for basal transcription. Negatively regulates ABT1.
Subunit / interactions. Interacts with ABT1. Forms a complex with ABT1 and suppresses the ABT1-induced activation of polymerase II-directed transcription in mammalian cells.
Subcellular location. Nucleus. Nucleolus. Nucleoplasm.
Similarity. Belongs to the ESF1 family.
RefSeq proteins (2): NP_001263309, NP_057733 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR012580 | NUC153 | Domain |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Homologous_superfamily |
| IPR039754 | Esf1 | Family |
| IPR056750 | RRM_ESF1 | Domain |
Pfam: PF08159, PF25121
UniProt features (58 total): modified residue 22, sequence conflict 13, compositionally biased region 12, region of interest 5, sequence variant 3, initiator methionine 1, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H501-F1 | 64.81 | 0.09 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (22): 2, 75, 77, 79, 82, 134, 153, 179, 180, 198, 296, 298, 311, 312, 313, 614, 657, 663, 693, 694 …
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 146 (showing top):
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, GOBP_RIBOSOME_BIOGENESIS, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, WEI_MYCN_TARGETS_WITH_E_BOX, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, GGCKCATGS_UNKNOWN, GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS, BERENJENO_TRANSFORMED_BY_RHOA_UP, GOCC_NUCLEOLUS, BENPORATH_ES_1, HAMAI_APOPTOSIS_VIA_TRAIL_UP, PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP, KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN, FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP
GO Biological Process (1): rRNA processing (GO:0006364)
GO Molecular Function (1): RNA binding (GO:0003723)
GO Cellular Component (4): obsolete extracellular space (GO:0005615), nucleoplasm (GO:0005654), nucleolus (GO:0005730), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nuclear lumen | 2 |
| RNA processing | 1 |
| rRNA metabolic process | 1 |
| ribosome biogenesis | 1 |
| nucleic acid binding | 1 |
| cellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2283 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ESF1 | ABT1 | Q9ULW3 | 876 |
| ESF1 | EMG1 | Q92979 | 677 |
| ESF1 | DDX49 | Q9Y6V7 | 660 |
| ESF1 | UTP25 | Q68CQ4 | 639 |
| ESF1 | PDCD11 | Q14690 | 634 |
| ESF1 | NOP56 | O00567 | 564 |
| ESF1 | BYSL | Q13895 | 564 |
| ESF1 | UTP20 | O75691 | 555 |
| ESF1 | KRI1 | Q8N9T8 | 553 |
| ESF1 | DDX10 | Q13206 | 532 |
| ESF1 | UTP4 | Q969X6 | 532 |
| ESF1 | HEATR1 | Q9H583 | 521 |
| ESF1 | DHX8 | Q14562 | 475 |
| ESF1 | UTP18 | Q9Y5J1 | 461 |
| ESF1 | SLX4IP | Q5VYV7 | 460 |
IntAct
115 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDK8 | MED19 | psi-mi:“MI:2364”(proximity) | 0.850 |
| ARL3 | UNC119B | psi-mi:“MI:0914”(association) | 0.730 |
| KPNA1 | TCERG1 | psi-mi:“MI:0914”(association) | 0.640 |
| RBM34 | RRP8 | psi-mi:“MI:0914”(association) | 0.640 |
| NPM1 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.610 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| CBX6 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| ABT1 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| EZH1 | EPOP | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| RPLP0 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| NPM1 | WDR46 | psi-mi:“MI:0914”(association) | 0.480 |
| ESF1 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ADAM19 | ESF1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Srp72 | psi-mi:“MI:0914”(association) | 0.350 | |
| Faap100 | CDKN2A | psi-mi:“MI:0914”(association) | 0.350 |
| CDK2AP1 | MTA3 | psi-mi:“MI:0914”(association) | 0.350 |
| ZMYND8 | MTA3 | psi-mi:“MI:0914”(association) | 0.350 |
| ITPKB | PDE4A | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPU | psi-mi:“MI:0914”(association) | 0.350 | |
| Nhsl1 | H3-3B | psi-mi:“MI:0914”(association) | 0.350 |
| Bcl7c | SMARCD2 | psi-mi:“MI:0914”(association) | 0.350 |
| GAR1 | TAF1 | psi-mi:“MI:0914”(association) | 0.350 |
| FBXO7 | ELOC | psi-mi:“MI:0914”(association) | 0.350 |
| RRP1B | ZNF785 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (180): ESF1 (Affinity Capture-RNA), ESF1 (Affinity Capture-MS), AATF (Co-fractionation), DDX52 (Co-fractionation), ESF1 (Co-fractionation), ESF1 (Co-fractionation), KIAA0020 (Co-fractionation), MPHOSPH10 (Co-fractionation), SEPT7 (Co-fractionation), UTP3 (Co-fractionation), ESF1 (Affinity Capture-MS), ESF1 (Affinity Capture-MS), ESF1 (Affinity Capture-MS), ESF1 (Affinity Capture-MS), ESF1 (Affinity Capture-MS)
ESM2 similar proteins: F4JP52, F4JW79, F4K4D6, F4K4Y5, I1HNB2, O04608, O23063, O24591, O48802, O49595, P05221, P06748, P07222, P13084, P16039, P35659, P91753, Q0WNR6, Q1HTZ8, Q1HTZ9, Q1PEP5, Q3T160, Q56WH4, Q61937, Q63ZM9, Q6AXS3, Q6DJ13, Q6V9I6, Q7TNV0, Q7XTT4, Q84JB7, Q8GUP3, Q8LDF9, Q8LJS2, Q8RXT5, Q94C59, Q94IK2, Q9C8J7, Q9FVE6, Q9H501
Diamond homologs: O74828, Q06344, Q3V1V3, Q756J5, Q76MT4, Q9H501
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 152 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Eukaryotic Translation Initiation | 5 | 15.0× | 5e-04 |
| Cap-dependent Translation Initiation | 5 | 15.0× | 5e-04 |
| SARS-CoV-1 modulates host translation machinery | 5 | 15.0× | 5e-04 |
| Influenza Viral RNA Transcription and Replication | 7 | 14.6× | 4e-05 |
| rRNA modification in the nucleus and cytosol | 8 | 14.5× | 2e-05 |
| Influenza Infection | 8 | 13.7× | 2e-05 |
| Nonsense-Mediated Decay (NMD) | 6 | 13.6× | 3e-04 |
| Eukaryotic Translation Elongation | 5 | 13.5× | 6e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ribosomal small subunit biogenesis | 12 | 20.6× | 4e-10 |
| cytoplasmic translation | 9 | 12.5× | 2e-05 |
| rRNA processing | 7 | 7.5× | 7e-03 |
| translation | 8 | 6.2× | 7e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
138 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 107 |
| Likely benign | 13 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2275 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:13715163:TTTAC:T | acceptor_gain | 1.0000 |
| 20:13715164:TTAC:T | acceptor_gain | 1.0000 |
| 20:13715165:TAC:T | acceptor_gain | 1.0000 |
| 20:13715166:AC:A | acceptor_gain | 1.0000 |
| 20:13715167:CC:C | acceptor_gain | 1.0000 |
| 20:13715168:C:CC | acceptor_gain | 1.0000 |
| 20:13715177:C:CT | acceptor_gain | 1.0000 |
| 20:13715178:A:T | acceptor_gain | 1.0000 |
| 20:13717363:GTTAC:G | donor_loss | 1.0000 |
| 20:13717364:TTAC:T | donor_loss | 1.0000 |
| 20:13717365:TACCT:T | donor_loss | 1.0000 |
| 20:13717366:A:T | donor_loss | 1.0000 |
| 20:13717378:T:TA | donor_gain | 1.0000 |
| 20:13717387:AATT:A | donor_gain | 1.0000 |
| 20:13717390:T:A | donor_gain | 1.0000 |
| 20:13717394:T:TA | donor_gain | 1.0000 |
| 20:13717510:TCAGC:T | acceptor_gain | 1.0000 |
| 20:13717511:CAGC:C | acceptor_gain | 1.0000 |
| 20:13717511:CAGCC:C | acceptor_gain | 1.0000 |
| 20:13717512:AGC:A | acceptor_gain | 1.0000 |
| 20:13717512:AGCCT:A | acceptor_loss | 1.0000 |
| 20:13717513:GC:G | acceptor_gain | 1.0000 |
| 20:13717513:GCC:G | acceptor_loss | 1.0000 |
| 20:13717514:CCTG:C | acceptor_gain | 1.0000 |
| 20:13717515:C:CA | acceptor_loss | 1.0000 |
| 20:13717515:C:CC | acceptor_gain | 1.0000 |
| 20:13717516:T:A | acceptor_loss | 1.0000 |
| 20:13717517:G:C | acceptor_gain | 1.0000 |
| 20:13717517:G:GC | acceptor_gain | 1.0000 |
| 20:13717525:C:CT | acceptor_gain | 1.0000 |
AlphaMissense
3089 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:13759699:C:A | W607C | 0.999 |
| 20:13759699:C:G | W607C | 0.999 |
| 20:13759701:A:G | W607R | 0.999 |
| 20:13759701:A:T | W607R | 0.999 |
| 20:13766912:A:G | W511R | 0.999 |
| 20:13766912:A:T | W511R | 0.999 |
| 20:13771334:A:G | L467P | 0.998 |
| 20:13771351:A:C | S461R | 0.998 |
| 20:13771351:A:T | S461R | 0.998 |
| 20:13771353:T:G | S461R | 0.998 |
| 20:13771427:G:T | A436E | 0.998 |
| 20:13775237:A:G | W357R | 0.998 |
| 20:13775237:A:T | W357R | 0.998 |
| 20:13766910:C:A | W511C | 0.997 |
| 20:13766910:C:G | W511C | 0.997 |
| 20:13771428:C:G | A436P | 0.997 |
| 20:13771445:C:G | R430P | 0.997 |
| 20:13775161:A:T | V382D | 0.997 |
| 20:13775251:A:T | V352D | 0.997 |
| 20:13770016:A:T | I470K | 0.996 |
| 20:13771397:G:T | A446D | 0.996 |
| 20:13733777:A:G | W632R | 0.995 |
| 20:13733777:A:T | W632R | 0.995 |
| 20:13771462:T:A | R424S | 0.995 |
| 20:13771462:T:G | R424S | 0.995 |
| 20:13775235:C:A | W357C | 0.995 |
| 20:13775235:C:G | W357C | 0.995 |
| 20:13775254:G:T | A351E | 0.995 |
| 20:13733775:C:A | W632C | 0.994 |
| 20:13733775:C:G | W632C | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000042373 (20:13758442 A>G), RS1000076354 (20:13731475 T>C), RS1000151567 (20:13739151 A>G), RS1000158363 (20:13762082 T>A), RS1000200503 (20:13751409 G>A), RS1000207875 (20:13758282 T>C), RS1000262687 (20:13747377 G>A), RS1000284498 (20:13760181 T>A,C), RS1000302884 (20:13757917 T>A), RS1000328247 (20:13734430 A>C), RS1000403129 (20:13778641 A>G), RS1000516463 (20:13742556 C>A,T), RS1000549012 (20:13748963 T>C), RS1000620003 (20:13726570 A>G), RS1000631523 (20:13749198 T>C)
Disease associations
OMIM: gene MIM:618765 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): breast ductal adenocarcinoma (MONDO:0005590)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| deoxynivalenol | increases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| nickel sulfate | decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| K 7174 | increases expression | 1 |
| abrine | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| Bortezomib | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Estradiol | increases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Manganese | increases abundance, increases expression, affects cotreatment | 1 |
| Phthalic Acids | decreases methylation | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
11 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT00637364 | PHASE1/PHASE2 | SUSPENDED | High Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain |
| NCT02779855 | PHASE1/PHASE2 | COMPLETED | Talimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer |
| NCT01753908 | EARLY_PHASE1 | COMPLETED | Broccoli Sprout Extract in Treating Patients With Breast Cancer |
| NCT01796041 | EARLY_PHASE1 | COMPLETED | Intraoperative Imaging of Breast Cancer With Indocyanine Green |
| NCT01208974 | Not specified | ACTIVE_NOT_RECRUITING | Nipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction |
| NCT01875198 | Not specified | TERMINATED | Oncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer |
| NCT03543397 | Not specified | UNKNOWN | MRI in Ductal Carcinoma in Situ (DCIS) |
| NCT03834532 | Not specified | COMPLETED | Living Well After Breast Surgery |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): breast ductal adenocarcinoma