ESPN
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Summary
ESPN (espin, HGNC:13281) is a protein-coding gene on chromosome 1p36.31, encoding Espin (B1AK53). Multifunctional actin-bundling protein.
This gene encodes a multifunctional actin-bundling protein. It plays a major role in regulating the organization, dimensions, dynamics, and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in various mechanosensory and chemosensory cells. Mutations in this gene are associated with autosomal recessive neurosensory deafness, and autosomal dominant sensorineural deafness without vestibular involvement.
Source: NCBI Gene 83715 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonsyndromic genetic hearing loss (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 699 total — 14 pathogenic, 22 likely-pathogenic (top 5% of genes corpus-wide)
- GTEx eGene: eQTL in 23 tissues, sQTL in 8 (q < 0.05)
- Phenotypes (HPO): 26
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.31 (unconstrained)
- MANE Select transcript:
NM_031475
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13281 |
| Approved symbol | ESPN |
| Name | espin |
| Location | 1p36.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000187017 |
| Ensembl biotype | protein_coding |
| OMIM | 606351 |
| Entrez | 83715 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 13 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron
MANE Select: ENST00000645284
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 2: 4, TSL 3: 4, TSL 5: 6
ENST00000645284, ENST00000418286, ENST00000434576, ENST00000461727, ENST00000468561, ENST00000475228, ENST00000475479, ENST00000477679, ENST00000478323, ENST00000632142, ENST00000632593, ENST00000632803, ENST00000633239, ENST00000633651, ENST00000636330, ENST00000636644
RefSeq mRNA: 3 — MANE Select: NM_031475
NM_001367473, NM_001367474, NM_031475
CCDS: CCDS70
Canonical transcript exons
ENST00000645284 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001607954 | 6440254 | 6440440 |
| ENSE00001628075 | 6428226 | 6428419 |
| ENSE00001652588 | 6444481 | 6444682 |
| ENSE00001663987 | 6448641 | 6449091 |
| ENSE00001694857 | 6459999 | 6460944 |
| ENSE00001726498 | 6440934 | 6441065 |
| ENSE00001750382 | 6440626 | 6440808 |
| ENSE00002140881 | 6445664 | 6445935 |
| ENSE00003544352 | 6451603 | 6451748 |
| ENSE00003610124 | 6451833 | 6452096 |
| ENSE00003630784 | 6457184 | 6457263 |
| ENSE00003685596 | 6457361 | 6457372 |
| ENSE00003825592 | 6424776 | 6425249 |
Expression profiles
Bgee: expression breadth ubiquitous, 184 present calls, max score 98.80.
FANTOM5 (CAGE): breadth broad, TPM avg 4.4751 / max 476.3177, expressed in 563 samples.
Highest expression (Bgee): testis, uterine tube, lobe of liver, mucosa of transverse colon, skin of abdomen.
Genetic regulation across tissues (GTEx eQTL / sQTL)
ESPN is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 23 tissues and its splicing (sQTL) in 8 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 31 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Skin Sun Exposed Lower leg | eqtl | 9.5e-73 | -0.47 | 1:6433403:T:C |
| Skin Not Sun Exposed Suprapubic | eqtl | 2.6e-58 | -0.45 | 1:6433403:T:C |
| Skin Sun Exposed Lower leg | sqtl | 4.6e-29 | -0.94 | 1:6448565:A:G |
| Testis | sqtl | 2.2e-26 | -0.89 | 1:6446883:G:C |
| Skin Not Sun Exposed Suprapubic | sqtl | 2.9e-25 | -0.93 | 1:6449607:T:C |
| Whole Blood | eqtl | 2.9e-20 | +0.82 | 1:6429956:G:A |
| Esophagus Mucosa | sqtl | 1.7e-17 | -0.75 | 1:6448062:G:C |
| Breast Mammary Tissue | eqtl | 6.0e-12 | +0.52 | 1:6426617:C:T |
| Nerve Tibial | sqtl | 5.8e-09 | -0.70 | 1:6448652:T:C |
| Esophagus Mucosa | eqtl | 1.2e-06 | -0.20 | 1:6434339:C:T |
| Liver | sqtl | 1.9e-06 | -1.04 | 1:6448565:A:G |
| Adipose Subcutaneous | eqtl | 7.5e-05 | +1.08 | 1:6461443:G:A |
| Pituitary | sqtl | 7.7e-05 | -0.92 | 1:6447167:G:C |
| Pituitary | eqtl | 5.2e-04 | +0.29 | 1:6427917:G:A |
| Brain Hypothalamus | eqtl | 2.2e-03 | +0.58 | 1:6398438:C:A |
| Testis | eqtl | 3.4e-03 | -0.18 | 1:6313638:T:C |
| Adipose Visceral Omentum | eqtl | 5.5e-03 | +1.44 | 1:6456963:T:G |
| Vagina | eqtl | 7.1e-03 | +1.83 | 1:6761125:G:T |
| Spleen | eqtl | 7.8e-03 | +0.66 | 1:6403417:C:T |
| Artery Aorta | eqtl | 1.0e-02 | -0.41 | 1:5640194:T:A |
FANTOM5 promoters
showing 10 of 17 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 381 | 2.9652 | 363 |
| 385 | 0.5012 | 160 |
| 387 | 0.1636 | 44 |
| 393 | 0.1433 | 37 |
| 396 | 0.1174 | 39 |
| 384 | 0.1100 | 48 |
| 386 | 0.0963 | 35 |
| 392 | 0.0827 | 32 |
| 390 | 0.0756 | 23 |
| 398 | 0.0698 | 21 |
Top tissues by expression
showing 100 of 236 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right testis | UBERON:0004534 | 98.80 | gold quality |
| left testis | UBERON:0004533 | 98.79 | gold quality |
| right uterine tube | UBERON:0001302 | 97.93 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.27 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.81 | gold quality |
| testis | UBERON:0000473 | 96.23 | gold quality |
| skin of abdomen | UBERON:0001416 | 94.56 | gold quality |
| skin of leg | UBERON:0001511 | 93.64 | gold quality |
| liver | UBERON:0002107 | 93.58 | gold quality |
| kidney epithelium | UBERON:0004819 | 93.52 | gold quality |
| ileal mucosa | UBERON:0000331 | 93.51 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 93.35 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 93.16 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.81 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.75 | gold quality |
| upper arm skin | UBERON:0004263 | 91.79 | silver quality |
| zone of skin | UBERON:0000014 | 91.17 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.38 | gold quality |
| pituitary gland | UBERON:0000007 | 90.06 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.40 | gold quality |
| duodenum | UBERON:0002114 | 89.32 | gold quality |
| esophagus mucosa | UBERON:0002469 | 89.01 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 88.54 | gold quality |
| buccal mucosa cell | CL:0002336 | 88.36 | silver quality |
| small intestine | UBERON:0002108 | 88.25 | gold quality |
| transverse colon | UBERON:0001157 | 87.23 | gold quality |
| kidney | UBERON:0002113 | 85.38 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 84.29 | gold quality |
| sural nerve | UBERON:0015488 | 84.26 | gold quality |
| metanephros | UBERON:0000081 | 83.89 | gold quality |
| cortex of kidney | UBERON:0001225 | 83.10 | gold quality |
| corpus epididymis | UBERON:0004359 | 82.79 | gold quality |
| sperm | CL:0000019 | 82.34 | silver quality |
| cerebellar cortex | UBERON:0002129 | 82.25 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 82.13 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 81.61 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.54 | gold quality |
| cerebellum | UBERON:0002037 | 81.44 | gold quality |
| vagina | UBERON:0000996 | 81.40 | gold quality |
| tibial nerve | UBERON:0001323 | 81.22 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 80.81 | gold quality |
| jejunum | UBERON:0002115 | 80.46 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 79.84 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 79.79 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 79.79 | gold quality |
| intestine | UBERON:0000160 | 79.64 | gold quality |
| gingival epithelium | UBERON:0001949 | 79.13 | silver quality |
| nasal cavity epithelium | UBERON:0005384 | 78.84 | gold quality |
| blood | UBERON:0000178 | 78.76 | gold quality |
| caput epididymis | UBERON:0004358 | 78.19 | gold quality |
| cauda epididymis | UBERON:0004360 | 78.04 | gold quality |
| endocervix | UBERON:0000458 | 77.32 | gold quality |
| minor salivary gland | UBERON:0001830 | 77.23 | gold quality |
| colon | UBERON:0001155 | 77.21 | gold quality |
| colonic mucosa | UBERON:0000317 | 77.19 | gold quality |
| large intestine | UBERON:0000059 | 77.06 | gold quality |
| mouth mucosa | UBERON:0003729 | 76.69 | gold quality |
| cerebellar vermis | UBERON:0004720 | 76.66 | gold quality |
| fallopian tube | UBERON:0003889 | 76.55 | gold quality |
| rectum | UBERON:0001052 | 76.41 | gold quality |
| quadriceps femoris | UBERON:0001377 | 76.28 | gold quality |
| gingiva | UBERON:0001828 | 76.20 | silver quality |
| saliva-secreting gland | UBERON:0001044 | 75.95 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 75.50 | gold quality |
| vastus lateralis | UBERON:0001379 | 75.15 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 75.03 | gold quality |
| bronchial epithelial cell | CL:0002328 | 74.58 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 74.32 | gold quality |
| bronchus | UBERON:0002185 | 74.27 | gold quality |
| left uterine tube | UBERON:0001303 | 74.14 | gold quality |
| esophagus | UBERON:0001043 | 74.08 | gold quality |
| bone marrow | UBERON:0002371 | 74.07 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 73.59 | gold quality |
| upper leg skin | UBERON:0004262 | 73.52 | gold quality |
| adrenal cortex | UBERON:0001235 | 73.31 | gold quality |
| adult organism | UBERON:0007023 | 73.27 | gold quality |
| prostate gland | UBERON:0002367 | 73.18 | gold quality |
| uterine cervix | UBERON:0000002 | 73.07 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 72.91 | gold quality |
| right adrenal gland | UBERON:0001233 | 72.68 | gold quality |
| left adrenal gland | UBERON:0001234 | 71.88 | gold quality |
| vena cava | UBERON:0004087 | 71.47 | gold quality |
| nipple | UBERON:0002030 | 71.20 | silver quality |
| skin of hip | UBERON:0001554 | 71.14 | silver quality |
| tonsil | UBERON:0002372 | 70.76 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 70.69 | silver quality |
| trabecular bone tissue | UBERON:0002483 | 70.42 | silver quality |
| pancreatic ductal cell | CL:0002079 | 70.21 | silver quality |
| biceps brachii | UBERON:0001507 | 70.14 | gold quality |
| ectocervix | UBERON:0012249 | 69.99 | gold quality |
| thymus | UBERON:0002370 | 69.86 | silver quality |
| medial globus pallidus | UBERON:0002477 | 69.80 | gold quality |
| cartilage tissue | UBERON:0002418 | 69.76 | gold quality |
| body of tongue | UBERON:0011876 | 69.52 | silver quality |
| globus pallidus | UBERON:0001875 | 69.33 | gold quality |
| monocyte | CL:0000576 | 69.30 | gold quality |
| adrenal gland | UBERON:0002369 | 69.24 | gold quality |
| oviduct epithelium | UBERON:0004804 | 69.13 | gold quality |
| saphenous vein | UBERON:0007318 | 68.87 | gold quality |
| secondary oocyte | CL:0000655 | 68.86 | silver quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 64.56 |
| E-CURD-114 | yes | 11.36 |
| E-ANND-3 | yes | 3.41 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 75 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Retina | tissue | 109.8 | |
| Skin 1 | tissue | 87.0 | not detected |
| Duodenum | tissue | 85.6 | high |
| Small intestine | tissue | 84.5 | high |
| Liver | tissue | 79.1 | medium |
| Testis | tissue | 67.2 | high |
| Pituitary gland | tissue | 44.8 | |
| Epididymis | tissue | 38.0 | high |
| Kidney | tissue | 35.1 | high |
| Cervix | tissue | 28.4 | medium |
| Bone marrow | tissue | 26.4 | not detected |
| Parathyroid gland | tissue | 25.3 | |
| Colon | tissue | 23.1 | high |
| Vagina | tissue | 21.9 | not detected |
| Fallopian tube | tissue | 14.8 | low |
| Esophagus | tissue | 11.1 | medium |
| Salivary gland | tissue | 8.8 | not detected |
| Rectum | tissue | 6.4 | high |
| Seminal vesicle | tissue | 5.8 | not detected |
| Prostate | tissue | 4.1 | not detected |
| Cerebellum | tissue | 4.0 | medium |
| Breast | tissue | 3.8 | not detected |
| Adrenal gland | tissue | 3.1 | medium |
| Nucleus accumbens | tissue | 2.9 | |
| Stomach 1 | tissue | 2.5 | medium |
| Appendix | tissue | 2.5 | medium |
| Endometrium 1 | tissue | 2.2 | not detected |
| Locus coeruleus | tissue | 1.9 | |
| Spinal cord | tissue | 1.8 | |
| Lung | tissue | 1.7 | not detected |
| Hippocampus | tissue | 1.5 | low |
| Thymus | tissue | 1.5 | |
| Tonsil | tissue | 1.5 | not detected |
| Choroid plexus | tissue | 1.4 | |
| Medulla oblongata | tissue | 1.4 | |
| Pancreas | tissue | 1.1 | not detected |
| Superior colliculi | tissue | 1.0 | |
| Frontal cortex | tissue | 0.9 | |
| Placenta | tissue | 0.9 | low |
| Postcentral gyrus | tissue | 0.9 | |
| Skeletal muscle | tissue | 0.8 | not detected |
| Smooth muscle | tissue | 0.8 | not detected |
| Midbrain | tissue | 0.8 | |
| Adipose tissue | tissue | 0.6 | not detected |
| Hypothalamus | tissue | 0.6 | |
| Periaqueductal gray | tissue | 0.5 | |
| Olfactory bulb | tissue | 0.5 | |
| Cerebral cortex | tissue | 0.4 | medium |
| Urinary bladder | tissue | 0.4 | medium |
| Thalamus | tissue | 0.4 | |
| Spleen | tissue | 0.4 | not detected |
| Somatosensory cortex | tissue | 0.4 | |
| Occipital cortex | tissue | 0.4 | |
| Motor cortex | tissue | 0.3 | |
| Gallbladder | tissue | 0.3 | not detected |
| Hippocampal formation | tissue | 0.3 | |
| Entorhinal cortex | tissue | 0.3 | |
| Temporal cortex | tissue | 0.3 | |
| Lymph node | tissue | 0.2 | not detected |
| Prefrontal cortex | tissue | 0.2 |
Brain sub-regions (HPA Brain Atlas): detected in 190; highest nTPM — Cerebellar cortex (29.5), Flocculonodular lobe (26.1), Vermis (25.0), Nucleus rhomboideus (13.4), Habenula (6.6).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting ESPN by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 59 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-3064-5P | 99.26 | 66.13 | 1497 |
| HSA-MIR-3085-3P | 99.26 | 66.16 | 1490 |
| HSA-MIR-6504-5P | 99.26 | 65.95 | 1487 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
Functional genomics
gnomAD constraint: pLI 7.27e-24, LOEUF 1.31, missense Z -1.09 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000645284 splits into 3 regions with different missense tolerance; 0 are missense-constrained. Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 1:6,424,956–6,445,786 | 556 / 633.6 | 0.88 | no |
| 1:6,445,787–6,448,933 | 130 / 223.9 | 0.58 | no |
| 1:6,448,934–6,460,143 | 374 / 381.4 | 0.98 | no |
Literature-anchored findings (GeneRIF, showing 11)
- human deafness and vestibular dysfunction co-segregated with either of two frameshift mutations in ESPN. (PMID:15286153)
- The results further strengthen the causative role of the espin gene in non-syndromic hearing loss and add new insights into espin structure and function. (PMID:15930085)
- Here, we report a new activity of the espins, one that depends on their enigmatic WH2 domain: the ability to assemble a large actin bundle when targeted to a specific subcellular location. (PMID:16569662)
- A recessive ESPN mutation causing congenital hearing loss in a Morocan family was reported. (PMID:18973245)
- Flies with mutations affecting the diaphanous,forked, and CG12026/TMHS genes displayed significant reductions in the amplitude of sound-evoked potentials compared to wild-type flies (PMID:19102128)
- The espin actin-filament-binding site has a major effect on the formation and dynamics of actin bundles. (PMID:24424026)
- The structures of Myo3 in complex with Espin1 not only elucidate the mechanism of the binding, but also reveal a Myo3-induced release of Espin1 auto-inhibition mechanism. (PMID:26785147)
- The utricles were then treated with a gamma-secretase inhibitor, followed by espin or control transduction and histochemistry. Although gamma-secretase inhibition increased the number of HCs, few had stereociliary arrays. In contrast, 46 h after espin1 transduction, a significant increase in hair-bundle-like structures was observed (PMID:26886463)
- A significant inverse correlation was observed between miR-612 and Espin protein expression in melanoma tissues. (PMID:29385671)
- ur study uncovers an additional USH gene, assigns the USH1 phenotype to a variant of ESPN and provides a 12th molecular component to the USH proteome (PMID:29572253)
- whirlin-espin interaction is important for the architecture of the USH2 complex and actin bundles cross-linked by espin. Our demonstration of whirlin N-terminal fragment interaction with espin, is significantly novel, providing insight into how these two proteins interact to form the USH2 complex. (PMID:31638198)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | espn | ENSDARG00000076414 |
| mus_musculus | Espn | ENSMUSG00000028943 |
| rattus_norvegicus | Espn | ENSRNOG00000010270 |
| drosophila_melanogaster | f | FBGN0262111 |
| caenorhabditis_elegans | WBGENE00012319 |
Paralogs (1): ESPNL (ENSG00000144488)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1861630) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 56 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal organ of Corti morphology | 2 |
| deafness | 2 |
| head shaking | 2 |
| abnormal tectorial membrane morphology | 2 |
| cochlear hair cell degeneration | 2 |
| cochlear inner hair cell degeneration | 2 |
| cochlear outer hair cell degeneration | 2 |
| pillar cell degeneration | 2 |
| increased or absent threshold for auditory brainstem response | 2 |
| abnormal inner ear morphology | 1 |
| abnormal inner ear vestibule morphology | 1 |
| organ of Corti degeneration | 1 |
| abnormal stria vascularis morphology | 1 |
| tremors | 1 |
| abnormal nursing | 1 |
| abnormal stationary movement | 1 |
| abnormal locomotor behavior | 1 |
| circling | 1 |
| bidirectional circling | 1 |
| abnormal gait | 1 |
| decreased grooming behavior | 1 |
| impaired swimming | 1 |
| impaired balance | 1 |
| abnormal reflex | 1 |
| abnormal cochlear hair cell morphology | 1 |
+31 more (showing top 25).
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| ACOT7 | protein-coding | 11332 |
| HES2 | protein-coding | 54626 |
| PLEKHG5 | protein-coding | 57449 |
| TNFRSF25 | protein-coding | 8718 |
| ZBTB48 | protein-coding | 3104 |
| NOL9 | protein-coding | 79707 |
| TAS1R1 | protein-coding | 80835 |
| MIR4252 | ncRNA | 100422975 |
| GPR153 | protein-coding | 387509 |
| HES3 | protein-coding | 390992 |
Protein
Protein identifiers
Espin — B1AK53 (reviewed: B1AK53)
Alternative names: Autosomal recessive deafness type 36 protein, Ectoplasmic specialization protein
All UniProt accessions (12): A0A0J9YW00, A0A0J9YWQ8, A0A0J9YY76, A0A1B0GUN9, A0A1B0GUS9, A0A2R8Y6D3, A0A2R8Y7L7, A0A2R8YG57, B1AK53, H0Y7L4, K7EMB7, Q5JYL1
UniProt curated annotations — full annotation on UniProt →
Function. Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimension, dynamics and signaling capacities of the actin filament-rich microvilli in the mechanosensory and chemosensory cells. Required for the assembly and stabilization of the stereociliary parallel actin bundles. Plays a crucial role in the formation and maintenance of inner ear hair cell stereocilia. Involved in the elongation of actin in stereocilia. In extrastriolar hair cells, required for targeting MYO3B to stereocilia tips, and for regulation of stereocilia diameter and staircase formation.
Subunit / interactions. Monomer. Binds F-actin in a Ca(2+)-resistant fashion. Interacts (via N-terminus) with BAIAP2 (via SH3-domain). Interacts with PFN2. Interacts with MYO3A (via C-terminus). Interacts with MYO3B (via C-terminus).
Subcellular location. Cytoplasm. Cytoskeleton. Cell projection. Stereocilium. Microvillus.
Disease relevance. Deafness, autosomal recessive, 36, with or without vestibular involvement (DFNB36) [MIM:609006] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DFNB36 is characterized by prelingual, profound hearing loss, and vestibular areflexia in some patients. The disease is caused by variants affecting the gene represented in this entry. Usher syndrome 1M (USH1M) [MIM:618632] A form of Usher syndrome, a genetically heterogeneous condition characterized by the association of retinitis pigmentosa with sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1M is an autosomal recessive disease characterized by prelingual sensorineural hearing loss, vestibular dysfunction, night blindness, and progressive impairment of vision. The disease may be caused by variants affecting the gene represented in this entry.
Domain organisation. The WH2-domain binds actin monomer and mediates actin bundle assembly.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| B1AK53-1 | 1 | yes |
| B1AK53-2 | 2 |
RefSeq proteins (3): NP_001354402, NP_001354403, NP_113663* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR003124 | WH2_dom | Domain |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR052420 | Espin/Espin-like | Family |
Pfam: PF02205, PF12796, PF13637
UniProt features (49 total): compositionally biased region 10, repeat 9, sequence variant 8, modified residue 6, region of interest 5, sequence conflict 4, splice variant 2, mutagenesis site 2, chain 1, domain 1, coiled-coil region 1
Structure
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-B1AK53-F1 | 68.76 | 0.38 |
Human Protein Atlas
Protein class: Predicted intracellular proteins, Disease related genes, Human disease related genes, Eye disease, Ear disease
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): vesicles
Antibody reliability (HPA): IH enhanced · IF approved
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6)
| Type | Positions |
|---|---|
| Phosphoserine | 338, 342, 515, 647, 690, 696 |
Mutagenesis-validated functional residues (2)
| Position | Phenotype |
|---|---|
| 790–795 | no effect on localization to microvilli. no effect on microvillar elongation. |
| 790–795 | loss of targeting to microvilli. impaired microvillar elongation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 4; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
4 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-9709957 | Sensory Perception | — |
| R-HSA-9659379 | Sensory processing of sound | — |
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea | electronic |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea | electronic |
MSigDB gene sets: 211 (showing top):
GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, BENPORATH_ES_WITH_H3K27ME3, MODULE_255, RORA1_01, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, MODULE_317, WHITE_NEUROBLASTOMA_WITH_1P36.3_DELETION, GOBP_ACTIN_FILAMENT_ORGANIZATION, GOBP_SENSORY_PERCEPTION, TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P, GOMF_ACTIN_BINDING, GOCC_NEURON_PROJECTION, GOBP_CELL_PROJECTION_ORGANIZATION, GOBP_MICROVILLUS_ORGANIZATION, WONG_ENDMETRIUM_CANCER_UP
GO Biological Process (3): sensory perception of sound (GO:0007605), microvillar actin bundle assembly (GO:0030034), actin filament bundle assembly (GO:0051017)
GO Molecular Function (4): SH3 domain binding (GO:0017124), actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (10): cytoplasm (GO:0005737), microvillus (GO:0005902), brush border (GO:0005903), filamentous actin (GO:0031941), stereocilium (GO:0032420), stereocilium tip (GO:0032426), cytoskeleton (GO:0005856), organelle (GO:0043226), actin-based cell projection (GO:0098858), cluster of actin-based cell projections (GO:0098862)
Reactome top-level categories
2 top-level categories:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
| Sensory Perception | 1 |
GO top-level categories
25 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| actin-based cell projection | 3 |
| sensory perception of mechanical stimulus | 1 |
| microvillus assembly | 1 |
| parallel actin filament bundle assembly | 1 |
| cellular component assembly | 1 |
| actin filament bundle organization | 1 |
| protein domain specific binding | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| actin filament bundle | 1 |
| microvillus | 1 |
| apical part of cell | 1 |
| cluster of actin-based cell projections | 1 |
| actin filament | 1 |
| protein-containing complex | 1 |
| stereocilium bundle | 1 |
| neuron projection | 1 |
| stereocilium | 1 |
| intracellular membraneless organelle | 1 |
| actin cytoskeleton | 1 |
| plasma membrane bounded cell projection | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 3 of 17 annotations. The rest are phylogenetic / computational / electronic (IEA).
3 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| microvillar actin bundle assembly | BP | mutant phenotype |
| microvillus | CC | direct assay |
| stereocilium | CC | direct assay |
Protein interactions and networks
STRING
showing 15 of 914 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ESPN | FSCN1 | Q16658 | 917 |
| ESPN | GJB2 | P29033 | 836 |
| ESPN | WHRN | Q9P202 | 804 |
| ESPN | MYO15A | Q9UKN7 | 778 |
| ESPN | MYO7A | P78427 | 725 |
| ESPN | MYO3A | Q8NEV4 | 723 |
| ESPN | E9PNW1 | E9PNW1 | 716 |
| ESPN | PCDH15 | Q96QU1 | 694 |
| ESPN | PLS1 | Q14651 | 691 |
| ESPN | STRC | Q7RTU9 | 683 |
| ESPN | EPS8 | Q12929 | 673 |
| ESPN | EPS8L2 | Q9H6S3 | 668 |
| ESPN | CDH23 | Q9H251 | 646 |
| ESPN | MYO3B | Q8WXR4 | 636 |
| ESPN | TRIOBP | Q9H2D6 | 631 |
IntAct
Human interaction partners of ESPN in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
5 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| CTSC | association | 0.350 | 2 |
| BAIAP2 | association | 0.350 | 1 |
| DNAI1 | association | 0.350 | 1 |
| PNKD | association | 0.350 | 1 |
| RAB37 | association | 0.350 | 1 |
BioGRID (18 interactions; top human partners by supporting records): BAIAP2 (Affinity Capture-MS; 2 records), BAIAP2L1 (Affinity Capture-MS), C17orf70 (Affinity Capture-MS), CTSC (Affinity Capture-MS), DBN1 (Cross-Linking-MS (XL-MS)), DDX24 (Affinity Capture-MS), DDX58 (Affinity Capture-RNA), DNAI1 (Affinity Capture-MS), FAM98A (Affinity Capture-MS), HNRNPL (Affinity Capture-RNA), METTL21B (Affinity Capture-MS), PNKD (Affinity Capture-MS), PRMT2 (Affinity Capture-MS), RAB37 (Affinity Capture-MS), SNRNP40 (Proximity Label-MS)
Disease & clinical
Genetic variants
Variant evidence for ESPN: 699 ClinVar records (36 pathogenic / likely pathogenic); 3 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
699 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 14 |
| Likely pathogenic | 22 |
| Uncertain significance | 336 |
| Likely benign | 221 |
| Benign | 39 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 36 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 450999 | NM_031475.3(ESPN):c.1464+1G>A | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 560535 | NM_031475.3(ESPN):c.2369_2386del (p.Arg790_Arg795del) | Pathogenic | criteria provided, single submitter | 2 |
| 594412 | NM_031475.3(ESPN):c.264G>A (p.Trp88Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 984702 | NM_031475.3(ESPN):c.1916-1G>C | Pathogenic | criteria provided, single submitter | 1 |
| 1299307 | NM_031475.3(ESPN):c.2081_2082del (p.Ser694fs) | Pathogenic | criteria provided, single submitter | 1 |
| 2445633 | NM_031475.3(ESPN):c.2496C>G (p.Tyr832Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 2572469 | NM_031475.3(ESPN):c.1649_1665del (p.Arg550fs) | Pathogenic | criteria provided, single submitter | 1 |
| 3601083 | NM_031475.3(ESPN):c.1916-1G>A | Pathogenic | criteria provided, single submitter | 1 |
| 3601084 | NM_031475.3(ESPN):c.1995_2056del (p.Lys666fs) | Pathogenic | criteria provided, single submitter | 1 |
| 4291998 | NM_031475.3(ESPN):c.489-2A>G | Pathogenic | criteria provided, single submitter | 1 |
| 4934024 | NM_031475.3(ESPN):c.2254_2275del (p.Glu752fs) | Pathogenic | criteria provided, single submitter | 1 |
| 4420 | NM_031475.3(ESPN):c.2155A>C (p.Ser719Arg) | Likely pathogenic | criteria provided, single submitter | 2 |
| 4423 | NM_031475.3(ESPN):c.2539AAG[1] (p.Lys848del) | Likely pathogenic | criteria provided, single submitter | 2 |
| 452503 | NM_031475.3(ESPN):c.292C>T (p.Gln98Ter) | Likely pathogenic | criteria provided, single submitter | 1 |
| 623132 | NM_031475.3(ESPN):c.2446G>T (p.Glu816Ter) | Likely pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore ESPN’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 35 predictions of 1,571):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 1:6425250–6425251 | donor_loss | 1.0000 | 4 |
| 1:6428416 | donor_gain | 1.0000 | |
| 1:6440252–6440253 | acceptor_loss | 1.0000 | 4 |
| 1:6440614 | acceptor_gain | 1.0000 | |
| 1:6440809–6440810 | donor_loss | 1.0000 | 5 |
| 1:6440932–6440933 | acceptor_loss | 1.0000 | 3 |
| 1:6441066–6441067 | donor_loss | 1.0000 | 5 |
| 1:6448639–6448640 | acceptor_loss | 1.0000 | 5 |
| 1:6448803–6448804 | donor_loss | 1.0000 | 3 |
| 1:6451601–6451602 | acceptor_loss | 1.0000 | 4 |
AlphaMissense
1,501 missense substitutions predicted likely pathogenic (of 5,490 scored), across 408 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M645 | 9 | 0.862 | 0.982 |
| M207 | 9 | 0.848 | 0.967 |
| D278 | 8 | 0.973 | 0.988 |
| D101 | 8 | 0.964 | 0.990 |
| D76 | 8 | 0.963 | 0.976 |
| D302 | 8 | 0.958 | 0.983 |
| D269 | 8 | 0.953 | 0.982 |
| H245 | 8 | 0.934 | 0.973 |
| F643 | 8 | 0.934 | 0.995 |
| D237 | 8 | 0.930 | 0.983 |
| D744 | 8 | 0.926 | 0.982 |
| H277 | 8 | 0.922 | 0.978 |
| D33 | 8 | 0.911 | 0.940 |
| H75 | 8 | 0.905 | 0.957 |
| N282 | 8 | 0.904 | 0.983 |
| H41 | 8 | 0.899 | 0.963 |
| H109 | 8 | 0.890 | 0.975 |
| H143 | 8 | 0.873 | 0.953 |
| H211 | 8 | 0.838 | 0.951 |
| S249 | 8 | 0.827 | 0.992 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
2 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 2.97e-05 |
| Kidney Renal Clear Cell Carcinoma (validation) | favorable | 6.16e-05 |
Disease associations
OMIM: gene MIM:606351 | disease phenotypes: MIM:609006, MIM:621556, MIM:618632, MIM:220290, MIM:607197
GenCC curated gene-disease
5 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| autosomal recessive nonsyndromic hearing loss 36 | Definitive | Autosomal recessive | 4 |
| nonsyndromic genetic hearing loss | Definitive | Autosomal recessive | 4 |
| Usher syndrome type 1 | Supportive | Autosomal recessive | |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive | |
| Usher syndrome, type 1M | Limited | Unknown | 2 |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
2 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Definitive | AR |
| nonsyndromic genetic hearing loss | Limited | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (3 panels, 2 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
3 panels:
| Panel | Rating |
|---|---|
| Monogenic hearing loss | green |
| Paediatric disorders | green |
| Retinal disorders | amber |
Mondo (7): autosomal recessive nonsyndromic hearing loss 36 (MONDO:0012170), inherited retinal dystrophy (MONDO:0019118), autosomal dominant nonsyndromic hearing loss 91 (MONDO:0981166), Usher syndrome, type 1M (MONDO:0032841), Usher syndrome type 1 (MONDO:0010168), hearing loss, autosomal recessive (MONDO:0019588), nonsyndromic genetic hearing loss (MONDO:0019497)
Orphanet (6): Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Rare genetic deafness (Orphanet:96210), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Usher syndrome type 1 (Orphanet:231169), Usher syndrome (Orphanet:886), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635)
HPO phenotypes
26 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000375 | Abnormal cochlea morphology |
| HP:0000399 | Prelingual sensorineural hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000518 | Cataract |
| HP:0000543 | Optic disc pallor |
| HP:0000572 | Visual loss |
| HP:0000575 | Scotoma |
| HP:0000662 | Nyctalopia |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0001270 | Motor delay |
| HP:0001712 | Left ventricular hypertrophy |
| HP:0001751 | Abnormal vestibular function |
| HP:0002141 | Gait imbalance |
| HP:0003596 | Middle age onset |
| HP:0007663 | Reduced visual acuity |
| HP:0007994 | Peripheral visual field loss |
| HP:0008568 | Vestibular areflexia |
| HP:0011462 | Young adult onset |
| HP:0011463 | Childhood onset |
| HP:0011510 | Drusen |
GWAS associations
3 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST009597_120 | Multiple sclerosis | 9e-17 |
| GCST005116_11 | Male-pattern baldness | 8e-10 |
| GCST010151_8 | Carotid intima media thickness x smoking interaction | 6e-6 |
EFO canonical traits (from GWAS)
1 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0006527 | smoking status measurement |
MeSH disease descriptors
4 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| C564609 | Deafness, Autosomal Recessive *(supp.)* | |
| C563815 | Deafness, Autosomal Recessive 36 *(supp.)* | |
| C580334 | Nonsyndromic Deafness *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | decreases methylation, decreases expression | 4 |
| Genistein | affects cotreatment, decreases expression, increases expression | 4 |
| bisphenol A | affects expression, increases expression | 3 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 3 |
| Benzo(a)pyrene | decreases expression, increases methylation | 3 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 3 |
| sodium arsenite | increases expression, decreases expression | 2 |
| Resveratrol | affects cotreatment, decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| daidzein | decreases expression, affects cotreatment | 1 |
| methyleugenol | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| glycitein | affects cotreatment, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| licochalcone B | increases expression | 1 |
| Rosiglitazone | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Diethylnitrosamine | decreases expression | 1 |
| Diethylstilbestrol | increases expression | 1 |
| Endosulfan | increases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Lead | affects expression | 1 |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 146 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT04224207 | Phase 3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | Phase 3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT01655212 | Phase 3 | TERMINATED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment in a Randomized Controlled Trial |
| NCT02005822 | Phase 3 | COMPLETED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment |
| NCT03374514 | Phase 3 | UNKNOWN | Cochlear Electrical Impedance and the Effect of Topical Dexamethasone on Cochlear Implant Surgery |
| NCT03763227 | Phase 2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | Phase 2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | Phase 2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT02497690 | Phase 2 | COMPLETED | Effectiveness of Therapy Via Telemedicine Following Cochlear Implants |
| NCT03107871 | Phase 2 | TERMINATED | Randomized Controlled Trial of Valganciclovir for Cytomegalovirus Infected Hearing Impaired Infants |
| NCT04120116 | Phase 2 | COMPLETED | FX-322 in Adults With Stable Sensorineural Hearing Loss |
| NCT05061758 | Phase 2 | WITHDRAWN | A Trial of LY3056480 in Patients With SNLH |
| NCT07364747 | Phase 2 | RECRUITING | Protective Effect of Acetylcysteine Against Cisplatinum-Induced Ototoxicity: A Randomized Controlled Trial |
| NCT05902962 | Phase 1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | Phase 1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | Phase 1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT01064505 | Phase 1 | COMPLETED | Safety Study of a Single IVT Injection of QPI-1007 in Chronic Optic Nerve Atrophy and Recent Onset NAION Patients |
| NCT05147701 | Phase 1 | RECRUITING | Safety of Cultured Allogeneic Adult Umbilical Cord Derived Mesenchymal Stem Cells for NAION |
| NCT02038972 | Phase 1 | COMPLETED | Safety of Autologous Stem Cell Infusion for Children With Acquired Hearing Loss |
| NCT02259595 | Phase 1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT04855045 | Phase 2/3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | Phase 1/2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | Phase 1/2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | Phase 1/2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | Early Phase 1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT07656753 | Early Phase 1 | RECRUITING | Safety and Efficacy Study of PUMCH-E111 Injection in Subjects With RLBP1 Related Inherited Retinal Dystrophy |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
| NCT03592017 | Not specified | COMPLETED | Performance of Long-wavelength Autofluorescence Imaging |
| NCT03662386 | Not specified | TERMINATED | Prospective Analysis of Genotype-phenotype Correlations Observed in a Large Cohort of Patients With Hereditary Retinal Dystrophies - GEPHIRD |
| NCT03691168 | Not specified | UNKNOWN | Multi-center Observation of the Natural Course of Inherited Retinal Dystrophies |
| NCT03843840 | Not specified | COMPLETED | Dual Wavelength OCT |
| NCT03853252 | Not specified | COMPLETED | iPS Cells of Patients for Models of Retinal Dystrophies |
| NCT05130385 | Not specified | UNKNOWN | High Resolution Optical Coherence Tomography |
| NCT05294978 | Not specified | RECRUITING | EyeConic: Qualification for Cone-Optogenetics |
| NCT05573984 | Not specified | ACTIVE_NOT_RECRUITING | Natural History of PRPF31 Mutation-Associated Retinal Dystrophy |
| NCT05793515 | Not specified | COMPLETED | Mechanisms of Inherited Retinal Dystrophies Using Whole Genome Sequencing and in Vitro and in Vivo Models |
| NCT05820100 | Not specified | COMPLETED | Observational Study to Assess the Reliability and Validity of the MLYMT and MLSDT |
| NCT05976139 | Not specified | RECRUITING | Micropulsed Laser in Patients With Macular Oedema in Retinal Dystrophies |
| NCT06162585 | Not specified | ACTIVE_NOT_RECRUITING | Non-Interventional Long Term Follow-up Study of Participants Previously Enrolled in the RESTORE Study |
| NCT06177977 | Not specified | RECRUITING | SS-HH-OCT as a Novel Diagnostic Modality for Early-Onset Retinal Dystrophies (EORDs) |
| NCT06375239 | Not specified | RECRUITING | Observational Study to Assess Endpoint Operational Feasibility & Measurement Properties in Patients with Retinal Degeneration |
| NCT06908161 | Not specified | NOT_YET_RECRUITING | Functional Assessments in Vision Impairment |
| NCT07085533 | Not specified | RECRUITING | Natural History Study of Inherited Retinal Diseases |
| NCT07502664 | Not specified | RECRUITING | Development and Evaluation of Functional Visual Field and Navigation Endpoints in Moderate to Profound Inherited Retinal Disease (DEFINE-IRD) |
| NCT07529041 | Not specified | ENROLLING_BY_INVITATION | Real-time Acoustic Biofeedback for Enhancing Fixation Stability: A Proof-of-concept Study to Improve Ophthalmic Imaging Diagnostic Quality |
| NCT02882477 | Phase 2/3 | UNKNOWN | Treatment of Wolfram Syndrome Type 2 With the Chelator Deferiprone and Incretin Based Therapy |
| NCT01834079 | Phase 1/2 | UNKNOWN | Study the Safety and Efficacy of Bone Marrow Derived Autologous Cells for the Treatment of Optic Nerve Disease |
| NCT04680143 | Phase 1/2 | COMPLETED | Systemic Erythropoietin Injection in Patients Having Optic Atrophy |
| NCT03011541 | Not specified | RECRUITING | Stem Cell Ophthalmology Treatment Study II |
| NCT04580979 | Not specified | COMPLETED | Natural History Study of FDXR Mutation-related Mitochondriopathy |
| NCT04594590 | Not specified | COMPLETED | Natural History Study of SLC25A46 Mutation-related Mitochondriopathy |
| NCT04723160 | Not specified | COMPLETED | Computer Aided Diagnosis of Multiple Eye Fundus Diseases From Color Fundus Photograph |
Related Atlas pages
- Associated diseases: autosomal recessive nonsyndromic hearing loss 36, nonsyndromic genetic hearing loss, Usher syndrome, type 1M, Usher syndrome type 1, hearing loss, autosomal recessive
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): androgenetic alopecia, autosomal recessive nonsyndromic hearing loss 28, autosomal recessive nonsyndromic hearing loss 36, hearing loss, autosomal recessive, inherited retinal dystrophy, multiple sclerosis, nonsyndromic genetic hearing loss, optic atrophy, sensorineural hearing loss disorder, Usher syndrome type 1, Usher syndrome, type 1M