EVI2A
geneOn this page
Also known as EVDA
Summary
EVI2A (ecotropic viral integration site 2A, HGNC:3499) is a protein-coding gene on chromosome 17q11.2, encoding Protein EVI2A (P22794). May complex with itself or/and other proteins within the membrane, to function as part of a cell-surface receptor.
Predicted to enable transmembrane signaling receptor activity. Located in several cellular components, including Golgi apparatus; cilium; and cytosol.
Source: NCBI Gene 2123 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 116 total — 56 pathogenic, 7 likely-pathogenic
- MANE Select transcript:
NM_014210
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3499 |
| Approved symbol | EVI2A |
| Name | ecotropic viral integration site 2A |
| Location | 17q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EVDA |
| Ensembl gene | ENSG00000126860 |
| Ensembl biotype | protein_coding |
| OMIM | 158380 |
| Entrez | 2123 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000247270, ENST00000461237, ENST00000462804, ENST00000895991
RefSeq mRNA: 2 — MANE Select: NM_014210
NM_001003927, NM_014210
CCDS: CCDS32608, CCDS42293
Canonical transcript exons
ENST00000462804 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002709648 | 31321495 | 31321622 |
| ENSE00003899186 | 31316410 | 31319023 |
Expression profiles
Bgee: expression breadth ubiquitous, 260 present calls, max score 99.49.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 32.9874 / max 1331.4671, expressed in 988 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 165235 | 32.7119 | 986 |
| 165236 | 0.1659 | 70 |
| 165234 | 0.1096 | 6 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 99.49 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.09 | gold quality |
| endothelial cell | CL:0000115 | 98.90 | gold quality |
| monocyte | CL:0000576 | 98.82 | gold quality |
| mononuclear cell | CL:0000842 | 98.81 | gold quality |
| leukocyte | CL:0000738 | 98.73 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 98.55 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.55 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.40 | gold quality |
| spinal cord | UBERON:0002240 | 98.26 | gold quality |
| pons | UBERON:0000988 | 98.25 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 98.01 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 97.54 | gold quality |
| globus pallidus | UBERON:0001875 | 97.31 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 97.14 | gold quality |
| medial globus pallidus | UBERON:0002477 | 96.93 | gold quality |
| medulla oblongata | UBERON:0001896 | 96.76 | gold quality |
| cranial nerve II | UBERON:0000941 | 96.47 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 96.31 | gold quality |
| granulocyte | CL:0000094 | 96.19 | gold quality |
| ventral tegmental area | UBERON:0002691 | 96.09 | gold quality |
| midbrain | UBERON:0001891 | 96.06 | gold quality |
| substantia nigra | UBERON:0002038 | 95.96 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 94.77 | gold quality |
| vermiform appendix | UBERON:0001154 | 94.65 | gold quality |
| putamen | UBERON:0001874 | 94.32 | gold quality |
| Ammon’s horn | UBERON:0001954 | 94.20 | gold quality |
| lymph node | UBERON:0000029 | 94.19 | gold quality |
| periodontal ligament | UBERON:0008266 | 93.84 | gold quality |
| bone marrow | UBERON:0002371 | 93.53 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-8 | yes | 47.16 |
| E-GEOD-134144 | yes | 27.17 |
| E-CURD-112 | yes | 26.33 |
| E-HCAD-11 | yes | 17.26 |
| E-MTAB-6701 | yes | 16.63 |
| E-GEOD-84465 | yes | 10.72 |
| E-ANND-3 | yes | 8.99 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
121 targeting EVI2A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
Literature-anchored findings (GeneRIF, showing 3)
- Increased expression of ecotropic viral integration site 2A promotes osteosarcoma evolution through activating MEK/ERK pathway. (PMID:31774019)
- Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses. (PMID:32733620)
- SMYD2 Imparts Gemcitabine Resistance to Pancreatic Adenocarcinoma Cells by Upregulating EVI2A. (PMID:37812330)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Evi2a | ENSMUSG00000078771 |
| rattus_norvegicus | Evi2a | ENSRNOG00000022764 |
Protein
Protein identifiers
Protein EVI2A — P22794 (reviewed: P22794)
Alternative names: Ecotropic viral integration site 2A protein homolog
All UniProt accessions (1): P22794
UniProt curated annotations — full annotation on UniProt →
Function. May complex with itself or/and other proteins within the membrane, to function as part of a cell-surface receptor.
Subcellular location. Membrane.
Similarity. Belongs to the EVI2A family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P22794-1 | 1 | yes |
| P22794-2 | 2 |
RefSeq proteins (2): NP_001003927, NP_055025* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008608 | Ectropic_vir_integratn_site_2A | Family |
Pfam: PF05399
UniProt features (14 total): glycosylation site 5, topological domain 2, signal peptide 1, chain 1, splice variant 1, transmembrane region 1, region of interest 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P22794-F1 | 56.81 | 0.03 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 211
Glycosylation sites (5): 49, 73, 112, 31, 38
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 302 (showing top):
WALLACE_PROSTATE_CANCER_RACE_UP, MCLACHLAN_DENTAL_CARIES_UP, LU_IL4_SIGNALING, MODULE_45, MODULE_64, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, RACCACAR_AML_Q6, chr17q11, RODRIGUES_NTN1_TARGETS_DN, GOLDRATH_ANTIGEN_RESPONSE, LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN, MODULE_66
GO Biological Process (0):
GO Molecular Function (2): transmembrane signaling receptor activity (GO:0004888), protein binding (GO:0005515)
GO Cellular Component (6): Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), cilium (GO:0005929), ciliary transition zone (GO:0035869), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cytoplasm | 2 |
| signaling receptor activity | 1 |
| binding | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
652 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EVI2A | EVI2B | P34910 | 973 |
| EVI2A | OMG | P23515 | 869 |
| EVI2A | RNF135 | Q8IUD6 | 809 |
| EVI2A | NF1 | P21359 | 791 |
| EVI2A | ADAP2 | Q9NPF8 | 765 |
| EVI2A | FHDC1 | Q9C0D6 | 639 |
| EVI2A | CRLF3 | Q8IUI8 | 611 |
| EVI2A | TEFM | Q96QE5 | 609 |
| EVI2A | AK3 | Q9UIJ7 | 602 |
| EVI2A | UTP6 | Q9NYH9 | 596 |
| EVI2A | AK4 | P27144 | 589 |
| EVI2A | SSH2 | Q76I76 | 584 |
| EVI2A | RAB11FIP4 | Q86YS3 | 580 |
| EVI2A | LRRC37B | Q96QE4 | 580 |
| EVI2A | COPRS | Q9NQ92 | 579 |
IntAct
27 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EVI2A | MALL | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAL | EVI2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | RTP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | PLP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | ATP6V0C | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | PLPP4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | UBIAD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2A | GOPC | psi-mi:“MI:0915”(physical association) | 0.500 |
| EVI2A | RORC | psi-mi:“MI:0915”(physical association) | 0.370 |
| RNF114 | EVI2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| EVI2A | NF1 | psi-mi:“MI:0914”(association) | 0.350 |
| MAL | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| RTP2 | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| PLP2 | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| ATP6V0C | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| UBIAD1 | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| MALL | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| PLPP4 | EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
| EVI2A | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (26): GOPC (Affinity Capture-MS), FGFR1 (Affinity Capture-MS), NCEH1 (Affinity Capture-MS), ARRB2 (Affinity Capture-MS), ARL6IP5 (Affinity Capture-MS), DOK2 (Affinity Capture-MS), GOPC (Affinity Capture-MS), ARL6IP5 (Affinity Capture-MS), DOK2 (Affinity Capture-MS), FGFR1 (Affinity Capture-MS), NCEH1 (Affinity Capture-MS), EVI2A (Two-hybrid), EVI2A (Two-hybrid), MALL (Two-hybrid), MAL (Two-hybrid)
ESM2 similar proteins: A0A1B0GTR0, A0A1B0GVN3, A6H7F9, A6NFE2, A7TZG1, A7TZG3, A7XV04, A7XV14, B0ZE70, B1B212, B2RTN2, B3F0J0, D2HQI1, O97687, P01586, P06740, P16745, P22794, P40221, P40933, P48092, P48346, P97604, Q01151, Q28028, Q29RT9, Q3TB92, Q3Y5G8, Q4GZL1, Q4U0U2, Q5BK38, Q5DT36, Q5DT37, Q5RBQ2, Q5RFR2, Q5UKY4, Q5WQV8, Q62875, Q68D85, Q75SZ9
Diamond homologs: P20934, P22794
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
116 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 56 |
| Likely pathogenic | 7 |
| Uncertain significance | 41 |
| Likely benign | 7 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1070145 | NC_000017.10:g.(?29559081)(29701173_?)del | Pathogenic |
| 1070146 | NC_000017.10:g.(?29586040)(29701173_?)del | Pathogenic |
| 1070147 | NC_000017.10:g.(?29587381)(29662055_?)del | Pathogenic |
| 1070266 | NC_000017.10:g.(?29527428)(29657848_?)del | Pathogenic |
| 1071967 | NC_000017.10:g.(?29422055)(29701173_?)del | Pathogenic |
| 1072078 | NC_000017.10:g.(?29422322)(29664606_?)del | Pathogenic |
| 1072079 | NC_000017.10:g.(?29422322)(29665163_?)del | Pathogenic |
| 1072219 | NC_000017.10:g.(?29587625)(29669475_?)del | Pathogenic |
| 1072220 | NC_000017.10:g.(?29588709)(29701193_?)del | Pathogenic |
| 1072221 | NC_000017.10:g.(?29592237)(29653280_?)del | Pathogenic |
| 1073833 | NC_000017.10:g.(?29422322)(29701178_?)del | Pathogenic |
| 1433157 | NC_000017.10:g.(?29527488)(29703830_?)del | Pathogenic |
| 1454789 | NC_000017.10:g.(?29622128)(29667673_?)del | Pathogenic |
| 1458070 | NC_000017.10:g.(?29585342)(29665843_?)del | Pathogenic |
| 1458077 | NC_000017.10:g.(?29496899)(29701173_?)del | Pathogenic |
| 1460273 | NC_000017.10:g.(?29546003)(29701173_?)del | Pathogenic |
| 217072 | NM_000267.3(NF1):c.2048_5041del | Pathogenic |
| 217085 | NM_000267.3(NF1):c.4773-22561_6311del | Pathogenic |
| 2422715 | NC_000017.10:g.(?29422055)(29662069_?)del | Pathogenic |
| 2422717 | NC_000017.10:g.(?29541449)(29701173_?)del | Pathogenic |
| 2422719 | NC_000017.10:g.(?29556833)(29701173_?)del | Pathogenic |
| 2422721 | NC_000017.10:g.(?29562619)(29701173_?)del | Pathogenic |
| 2422722 | NC_000017.10:g.(?29575982)(29665843_?)del | Pathogenic |
| 2422723 | NC_000017.10:g.(?29585352)(29670163_?)del | Pathogenic |
| 2422724 | NC_000017.10:g.(?29592237)(29701173_?)del | Pathogenic |
| 2422725 | NC_000017.10:g.(?29622027)(29654877_?)del | Pathogenic |
| 2422726 | NC_000017.10:g.(?29645324)(29679452_?)del | Pathogenic |
| 2422730 | NC_000017.10:g.(?29527420)(29701173_?)del | Pathogenic |
| 2422742 | NC_000017.10:g.(?29559879)(29685283_?)del | Pathogenic |
| 3242852 | NC_000017.10:g.(?29422055)(29679452_?)del | Pathogenic |
SpliceAI
469 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:31319021:AATC:A | acceptor_loss | 0.9900 |
| 17:31319022:ATCTG:A | acceptor_loss | 0.9900 |
| 17:31319023:TCTGT:T | acceptor_loss | 0.9900 |
| 17:31319024:C:CC | acceptor_gain | 0.9900 |
| 17:31319024:CT:C | acceptor_loss | 0.9900 |
| 17:31319025:T:G | acceptor_loss | 0.9900 |
| 17:31319304:T:TA | donor_gain | 0.9900 |
| 17:31319020:CAAT:C | acceptor_gain | 0.9800 |
| 17:31319026:G:C | acceptor_loss | 0.9800 |
| 17:31320514:C:CC | acceptor_gain | 0.9800 |
| 17:31318311:T:C | donor_gain | 0.9700 |
| 17:31321490:CCTA:C | donor_loss | 0.9700 |
| 17:31321491:CTAC:C | donor_loss | 0.9700 |
| 17:31321492:TAC:T | donor_loss | 0.9700 |
| 17:31321493:A:AT | donor_loss | 0.9700 |
| 17:31321494:C:CA | donor_loss | 0.9700 |
| 17:31318307:CCTAT:C | donor_gain | 0.9600 |
| 17:31318336:T:TA | donor_gain | 0.9600 |
| 17:31319022:AT:A | acceptor_gain | 0.9600 |
| 17:31318608:G:C | donor_gain | 0.9500 |
| 17:31318612:AG:A | donor_gain | 0.9500 |
| 17:31318643:T:TA | donor_gain | 0.9500 |
| 17:31320512:TA:T | acceptor_gain | 0.9500 |
| 17:31318355:T:A | donor_gain | 0.9400 |
| 17:31319021:AAT:A | acceptor_gain | 0.9400 |
| 17:31320470:T:C | acceptor_gain | 0.9400 |
| 17:31318613:G:C | donor_gain | 0.9300 |
| 17:31319019:GCAAT:G | acceptor_gain | 0.9300 |
| 17:31319020:CAATC:C | acceptor_gain | 0.9300 |
| 17:31321005:C:CC | acceptor_gain | 0.9300 |
AlphaMissense
1553 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:31318569:A:G | C149R | 0.991 |
| 17:31318602:A:G | C138R | 0.983 |
| 17:31318586:G:T | A143E | 0.980 |
| 17:31318466:A:C | F183C | 0.971 |
| 17:31318447:C:A | W189C | 0.968 |
| 17:31318447:C:G | W189C | 0.968 |
| 17:31318567:A:C | C149W | 0.964 |
| 17:31318477:G:C | S179R | 0.963 |
| 17:31318477:G:T | S179R | 0.963 |
| 17:31318479:T:G | S179R | 0.963 |
| 17:31318580:A:C | L145R | 0.963 |
| 17:31318466:A:G | F183S | 0.962 |
| 17:31318536:C:G | A160P | 0.962 |
| 17:31318568:C:T | C149Y | 0.961 |
| 17:31318449:A:G | W189R | 0.958 |
| 17:31318449:A:T | W189R | 0.958 |
| 17:31318580:A:T | L145H | 0.957 |
| 17:31318474:A:C | N180K | 0.956 |
| 17:31318474:A:T | N180K | 0.956 |
| 17:31318465:A:C | F183L | 0.953 |
| 17:31318465:A:T | F183L | 0.953 |
| 17:31318467:A:G | F183L | 0.953 |
| 17:31318470:C:G | D182H | 0.951 |
| 17:31318559:A:G | L152P | 0.950 |
| 17:31318574:A:C | L147R | 0.950 |
| 17:31318559:A:C | L152R | 0.948 |
| 17:31318480:T:A | R178S | 0.947 |
| 17:31318480:T:G | R178S | 0.947 |
| 17:31318535:G:T | A160E | 0.947 |
| 17:31318580:A:G | L145P | 0.947 |
dbSNP variants (sampled 300 via entrez): RS1000103404 (17:31322694 T>C), RS1000328636 (17:31321720 A>G), RS1000345069 (17:31316512 T>C), RS1000666845 (17:31317234 C>G,T), RS1000699680 (17:31316884 G>C), RS1000922625 (17:31318013 T>G), RS1000930613 (17:31323156 G>A), RS1001396208 (17:31317744 T>C), RS1003199634 (17:31319128 A>C), RS1003374058 (17:31320107 A>G), RS1004034830 (17:31320168 A>G), RS1005826964 (17:31318717 G>A,C), RS1006086091 (17:31317683 T>G), RS1006148295 (17:31318436 G>A,C), RS1007011107 (17:31322571 G>C)
Disease associations
OMIM: gene MIM:158380 | disease phenotypes: MIM:162200, MIM:607785
GenCC curated gene-disease
Mondo (4): neurofibromatosis type 1 (MONDO:0018975), juvenile myelomonocytic leukemia (MONDO:0011908), hereditary neoplastic syndrome (MONDO:0015356), hereditary breast ovarian cancer syndrome (MONDO:0003582)
Orphanet (4): Neurofibromatosis type 1 (Orphanet:636), Inherited cancer-predisposing syndrome (Orphanet:140162), Juvenile myelomonocytic leukemia (Orphanet:86834), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006464_23 | Endometrial cancer | 4.000000e-08 |
| GCST006465_1 | Endometrial cancer (endometrioid histology) | 1.000000e-07 |
| GCST010703_342 | Brain morphology (MOSTest) | 4.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D054429 | Leukemia, Myelomonocytic, Juvenile | C04.557.337.539.525; C15.378.190.615.520; C15.378.508.539.525 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D009456 | Neurofibromatosis 1 | C04.557.580.600.580.590.650; C04.700.631.650; C10.562.600.500; C10.574.500.549.400; C10.668.829.675; C16.320.400.560.400; C16.320.700.633.650 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
50 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Estradiol | affects expression, affects cotreatment, decreases expression | 2 |
| Nickel | increases expression | 2 |
| Progesterone | decreases expression, increases expression, affects cotreatment | 2 |
| aristolochic acid I | increases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| ethylbenzene | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bis(tri-n-butyltin)oxide | increases expression | 1 |
| bisphenol A | affects cotreatment, increases expression | 1 |
| deoxynivalenol | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| 2-xylene | increases expression | 1 |
| 1-nitropyrene | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Anisomycin | increases expression | 1 |
| Benzene | increases expression | 1 |
| Hexachlorocyclohexane | increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Cyclophosphamide | decreases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Fluoxetine | increases expression | 1 |
| Indomethacin | increases expression, affects cotreatment | 1 |
Clinical trials (associated diseases)
181 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00169611 | PHASE4 | COMPLETED | NF1-Attention: Study of Children With Neurofibromatosis Type 1 Treated by Methylphenidate |
| NCT03975829 | PHASE4 | RECRUITING | Pediatric Long-Term Follow-up and Rollover Study |
| NCT02471339 | PHASE3 | COMPLETED | Acceptance and Commitment Training for Adolescents and Young Adults With Neurofibromatosis Type 1, Plexiform Neurofibromas, and Chronic Pain |
| NCT03871257 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of the Drugs Selumetinib Versus Carboplatin/Vincristine in Patients With Neurofibromatosis and Low-Grade Glioma |
| NCT04461886 | PHASE3 | TERMINATED | A Long-term Study of NPC-12G Gel in Neurofibromatosis Type I |
| NCT04924608 | PHASE3 | ACTIVE_NOT_RECRUITING | Efficacy and Safety of Selumetinib in Adults With NF1 Who Have Symptomatic, Inoperable Plexiform Neurofibromas |
| NCT05913037 | PHASE3 | ACTIVE_NOT_RECRUITING | FCN-159 in Adult Patients With Symptomatic, Inoperable Neurofibromatosis Type 1-Related Plexiform Neurofibromas |
| NCT00021541 | PHASE2 | COMPLETED | R115777 to Treat Children With Neurofibromatosis Type 1 and Progressive Plexiform Neurofibromas |
| NCT00030264 | PHASE2 | COMPLETED | Combination Chemotherapy in Treating Patients With Neurofibromatosis and Progressive Plexiform Neurofibromas |
| NCT00076102 | PHASE2 | COMPLETED | Pirfenidone in Children and Young Adults With Neurofibromatosis Type I and Progressive Plexiform Neurofibromas |
| NCT00304083 | PHASE2 | COMPLETED | Combination Chemotherapy in Treating Patients With Stage III or Stage IV Malignant Peripheral Nerve Sheath Tumors |
| NCT00326872 | PHASE2 | TERMINATED | AZD2171 in Treating Patients With Neurofibromatosis Type 1 and Plexiform Neurofibroma and/or Neurofibroma Near the Spine |
| NCT00589784 | PHASE2 | COMPLETED | Phase II Trial of Sunitinib (SU011248) in Patients With Recurrent or Inoperable Meningioma |
| NCT00634270 | PHASE2 | COMPLETED | A Phase II Study of the mTOR Inhibitor Sirolimus in Neurofibromatosis Type 1 Related Plexiform Neurofibromas |
| NCT00754780 | PHASE2 | COMPLETED | Clinical Trial of Pirfenidone in Adult Patients With Neurofibromatosis 1 |
| NCT00846430 | PHASE2 | COMPLETED | Medical Treatment of High-Risk Neurofibromas |
| NCT00853580 | PHASE2 | COMPLETED | A Randomized Placebo-Controlled Study of Lovastatin in Children With Neurofibromatosis Type 1 |
| NCT01125046 | PHASE2 | COMPLETED | Bevacizumab in Treating Patients With Recurrent or Progressive Meningiomas |
| NCT01402817 | PHASE2 | TERMINATED | Study of Sutent®/Sunitinib (SU11248) in Subjects With NF-1 Plexiform Neurofibromas |
| NCT01412892 | PHASE2 | COMPLETED | Use of RAD001 as Monotherapy in the Treatment of Neurofibromatosis 1 Related Internal Plexiform Neurofibromas |
| NCT01553149 | PHASE2 | COMPLETED | Low-Dose or High-Dose Lenalidomide in Treating Younger Patients With Recurrent, Refractory, or Progressive Pilocytic Astrocytoma or Optic Pathway Glioma |
| NCT01673009 | PHASE2 | COMPLETED | Phase II Study of Gleevec/Imatinib Mesylate (STI-571, NCS 716051) in Neurofibromatosis (NF1) Patients With Plexiform Neurofibromas |
| NCT01968590 | PHASE2 | TERMINATED | Vitamin D Supplementation for Adults With Neurofibromatosis Type 1 (NF1) |
| NCT02096471 | PHASE2 | COMPLETED | MEK Inhibitor PD-0325901 Trial in Adolescents and Adults With NF1 |
| NCT02101736 | PHASE2 | COMPLETED | Cabozantinib for Plexiform Neurofibromas (PN) in Subjects With NF1 in Children and Adults |
| NCT02332902 | PHASE2 | COMPLETED | Everolimus for Treatment of Disfiguring Cutaneous Lesions in Neurofibromatosis1 CRAD001CUS232T |
| NCT02407405 | PHASE2 | ACTIVE_NOT_RECRUITING | MEK 1/2 Inhibitor Selumetinib (AZD6244 Hydrogen Sulfate) in Adults With Neurofibromatosis Type 1 (NF1) and Inoperable Plexiform Neurofibromas |
| NCT02728388 | PHASE2 | RECRUITING | Photodynamic Therapy for Benign Dermal Neurofibromas- Phase II |
| NCT02839720 | PHASE2 | COMPLETED | Selumetinib in Treating Patients With Neurofibromatosis Type 1 and Cutaneous Neurofibroma |
| NCT02964884 | PHASE2 | ACTIVE_NOT_RECRUITING | Interventions for Reading Disabilities in NF1 |
| NCT03090971 | PHASE2 | COMPLETED | Use of Topical Liquid Diclofenac Following Laser Microporation of Cutaneous Neurofibromas in Patients With NF1 |
| NCT03109301 | PHASE2 | WITHDRAWN | Mitogen Activated Protein Kinase Kinase (MEK1/2) Inhibitor Selumetinib (AZD6244 Hydrogen Sulfate) in People With Neurofibromatosis Type 1 (NF1) Mutated Gastrointestinal Stromal Tumors (GIST) |
| NCT03190915 | PHASE2 | ACTIVE_NOT_RECRUITING | Trametinib in Treating Patients With Relapsed or Refractory Juvenile Myelomonocytic Leukemia |
| NCT03231306 | PHASE2 | COMPLETED | Phase II Study of Binimetinib in Children and Adults With NF1 Plexiform Neurofibromas |
| NCT03433183 | PHASE2 | COMPLETED | SARC031: MEK Inhibitor Selumetinib (AZD6244) in Combination With the mTOR Inhibitor Sirolimus for Patients With Malignant Peripheral Nerve Sheath Tumors |
| NCT03741101 | PHASE2 | UNKNOWN | Treatment of NF1-related Plexiform Neurofibroma With Trametinib |
| NCT03962543 | PHASE2 | ACTIVE_NOT_RECRUITING | MEK Inhibitor Mirdametinib (PD-0325901) in Patients With Neurofibromatosis Type 1 Associated Plexiform Neurofibromas |
| NCT04435665 | PHASE2 | COMPLETED | NFX-179 Topical Gel Treatment in Adults With Neurofibromatosis 1 (NF1) and Cutaneous Neurofibromas (cNF) |
| NCT04481035 | PHASE2 | COMPLETED | Antioxidant Therapy With N-acetylcysteine for Learning and Motor Behavior in Children With Neurofibromatosis Type 1 |
| NCT04481048 | PHASE2 | ACTIVE_NOT_RECRUITING | Antioxidant Therapy With N-acetylcysteine for Children With Neurofibromatosis Type 1 |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): endometrial carcinoma, juvenile myelomonocytic leukemia, neurofibromatosis type 1