EVPL
gene geneOn this page
Also known as EVPK
Summary
EVPL (envoplakin, HGNC:3503) is a protein-coding gene on chromosome 17q25.1, encoding Envoplakin (Q92817). Component of the cornified envelope of keratinocytes.
This gene encodes a member of the plakin family of proteins that forms a component of desmosomes and the epidermal cornified envelope. This gene is located in the tylosis oesophageal cancer locus on chromosome 17q25, and its deletion is associated with both familial and sporadic forms of oesophageal squamous cell carcinoma. Patients suffering from the autoimmune mucocutaneous disorder, paraneoplastic pemphigus, develop antibodies against the encoded protein.
Source: NCBI Gene 2125 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Tourette syndrome (No Known Disease Relationship, GenCC)
- GWAS associations: 5
- Clinical variants (ClinVar): 433 total
- MANE Select transcript:
NM_001988
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3503 |
| Approved symbol | EVPL |
| Name | envoplakin |
| Location | 17q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EVPK |
| Ensembl gene | ENSG00000167880 |
| Ensembl biotype | protein_coding |
| OMIM | 601590 |
| Entrez | 2125 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 5 protein_coding, 2 retained_intron
ENST00000301607, ENST00000586740, ENST00000587569, ENST00000589231, ENST00000593037, ENST00000870829, ENST00000870830
RefSeq mRNA: 2 — MANE Select: NM_001988
NM_001320747, NM_001988
CCDS: CCDS11737, CCDS82207
Canonical transcript exons
ENST00000301607 — 22 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001117959 | 76006845 | 76010543 |
| ENSE00001117961 | 76017739 | 76017911 |
| ENSE00001117963 | 76018161 | 76018258 |
| ENSE00001117967 | 76018446 | 76018600 |
| ENSE00001294715 | 76027101 | 76027306 |
| ENSE00003462949 | 76019528 | 76019653 |
| ENSE00003483040 | 76018914 | 76019060 |
| ENSE00003489118 | 76024021 | 76024120 |
| ENSE00003490968 | 76015450 | 76015628 |
| ENSE00003493438 | 76021468 | 76021563 |
| ENSE00003541266 | 76014426 | 76014576 |
| ENSE00003550581 | 76021674 | 76021781 |
| ENSE00003559978 | 76022189 | 76022227 |
| ENSE00003579119 | 76012006 | 76012089 |
| ENSE00003580091 | 76015227 | 76015365 |
| ENSE00003581766 | 76023292 | 76023418 |
| ENSE00003585826 | 76022413 | 76022538 |
| ENSE00003615265 | 76021867 | 76022028 |
| ENSE00003617174 | 76014916 | 76015109 |
| ENSE00003634818 | 76011576 | 76011668 |
| ENSE00003637640 | 76011772 | 76011882 |
| ENSE00003643990 | 76023500 | 76023654 |
Expression profiles
Bgee: expression breadth ubiquitous, 187 present calls, max score 99.35.
FANTOM5 (CAGE): breadth broad, TPM avg 5.3370 / max 273.0761, expressed in 394 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168154 | 3.4435 | 326 |
| 168155 | 1.5236 | 373 |
| 168153 | 0.3699 | 140 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.35 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.49 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.96 | gold quality |
| skin of leg | UBERON:0001511 | 96.87 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 95.77 | gold quality |
| zone of skin | UBERON:0000014 | 95.19 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 93.78 | gold quality |
| upper arm skin | UBERON:0004263 | 93.11 | gold quality |
| gingiva | UBERON:0001828 | 92.97 | gold quality |
| oral cavity | UBERON:0000167 | 92.39 | gold quality |
| gingival epithelium | UBERON:0001949 | 92.25 | gold quality |
| upper leg skin | UBERON:0004262 | 91.03 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 90.01 | gold quality |
| squamous epithelium | UBERON:0006914 | 89.98 | gold quality |
| nipple | UBERON:0002030 | 89.54 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 89.54 | gold quality |
| mammalian vulva | UBERON:0000997 | 89.50 | gold quality |
| cervix epithelium | UBERON:0004801 | 89.00 | gold quality |
| vagina | UBERON:0000996 | 88.21 | gold quality |
| endometrium epithelium | UBERON:0004811 | 87.85 | gold quality |
| body of tongue | UBERON:0011876 | 87.41 | gold quality |
| penis | UBERON:0000989 | 87.04 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 86.97 | silver quality |
| mucosa of transverse colon | UBERON:0004991 | 85.11 | gold quality |
| pancreatic ductal cell | CL:0002079 | 84.99 | silver quality |
| tongue | UBERON:0001723 | 83.89 | gold quality |
| metanephros cortex | UBERON:0010533 | 83.85 | gold quality |
| mouth mucosa | UBERON:0003729 | 83.38 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.71 | silver quality |
| hair follicle | UBERON:0002073 | 81.79 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.36 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): PAX1, RELA, SP1, TP63
miRNA regulators (miRDB)
20 targeting EVPL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6745 | 99.74 | 65.33 | 1321 |
| HSA-MIR-6762-3P | 99.66 | 66.94 | 1188 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-9851-3P | 99.63 | 69.68 | 1110 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
| HSA-MIR-593-5P | 99.34 | 69.50 | 965 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-4716-5P | 98.82 | 68.57 | 1168 |
| HSA-MIR-4520-3P | 98.75 | 66.55 | 963 |
| HSA-MIR-6880-5P | 98.08 | 65.59 | 1282 |
| HSA-MIR-6728-5P | 97.79 | 66.33 | 891 |
| HSA-MIR-450B-3P | 97.56 | 66.12 | 512 |
| HSA-MIR-769-3P | 97.06 | 64.83 | 464 |
| HSA-MIR-7847-3P | 96.63 | 64.58 | 952 |
| HSA-MIR-6889-5P | 90.26 | 64.13 | 291 |
| HSA-MIR-6777-5P | 88.76 | 62.64 | 222 |
Literature-anchored findings (GeneRIF, showing 7)
- envoplakin and periplakin bind to the plasma membrane upon elevation of intracellular [Ca(2+)] in differentiating keratinocytes, where they serve as a scaffold for cornified cell envelope assembly (PMID:15033990)
- EVPL might not be the target gene responsible for oesophageal cancer, despite its strong candidacy in terms of character and localization (PMID:15756445)
- autoantibodies are detected in patients with paraneoplastic pemphigus (PMID:18820940)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- We confirmed associations with papillary thyroid cancer and SNPs in FOXE1/HEMGN, SERPINA5 (rs2069974), FTO (rs8047395), EVPL (rs2071194), TICAM1 (rs8120) and SCARB1 (rs11057820) genes. We found associations with SNPs in FOXE1, SERPINA5, FTO, TICAM1 and HSPA6 and and follicular thyroid cancer (PMID:27207655)
- N-terminus extremities of envoplakin and C-terminus of its linker subdomain are major epitopes of paraneoplastic pemphigus (PMID:27427435)
- Frequency of Envoplakin and Type VII Collagen Autoantibodies and Co-occurrence with Other Skin-specific Autoantibodies in HIV-infected Patients and Uninfected Controls. (PMID:34694419)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | evpla | ENSDARG00000019808 |
| ENSDARG00000103459 | ||
| mus_musculus | Evpl | ENSMUSG00000034282 |
| rattus_norvegicus | Evpl | ENSRNOG00000009343 |
Paralogs (2): PPL (ENSG00000118898), EVPLL (ENSG00000214860)
Protein
Protein identifiers
Envoplakin — Q92817 (reviewed: Q92817)
Alternative names: 210 kDa cornified envelope precursor protein, 210 kDa paraneoplastic pemphigus antigen, p210
All UniProt accessions (3): Q92817, K7EKI0, K7EQ87
UniProt curated annotations — full annotation on UniProt →
Function. Component of the cornified envelope of keratinocytes. May link the cornified envelope to desmosomes and intermediate filaments.
Subunit / interactions. May form a homodimer or a heterodimer with PPL.
Subcellular location. Cell junction. Desmosome. Cornified envelope. Cytoplasm. Cytoskeleton.
Tissue specificity. Exclusively expressed in stratified squamous epithelia.
Induction. During differentiation of epidermal keratinocytes.
Similarity. Belongs to the plakin or cytolinker family.
RefSeq proteins (2): NP_001307676, NP_001979* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001101 | Plectin_repeat | Repeat |
| IPR001452 | SH3_domain | Domain |
| IPR018159 | Spectrin/alpha-actinin | Repeat |
| IPR035915 | Plakin_repeat_sf | Homologous_superfamily |
| IPR041615 | Desmoplakin_SH3 | Domain |
| IPR043197 | Plakin | Family |
| IPR055419 | Spectrin_PEPL/EVPL | Domain |
| IPR058847 | Plectin_PPL | Domain |
Pfam: PF00681, PF17902, PF23160, PF26346
UniProt features (54 total): helix 11, region of interest 9, repeat 8, turn 6, compositionally biased region 5, sequence variant 4, strand 4, modified residue 3, chain 1, coiled-coil region 1, domain 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4QMD | X-RAY DIFFRACTION | 1.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92817-F1 | 71.90 | 0.18 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 1575, 1799, 2025
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6809371 | Formation of the cornified envelope |
MSigDB gene sets: 138 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_UP, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_ANTIMICROBIAL_HUMORAL_RESPONSE, GOBP_INTERMEDIATE_FILAMENT_BASED_PROCESS, JAEGER_METASTASIS_DN, PEREZ_TP63_TARGETS, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_PEPTIDE_CROSS_LINKING, GGGTGGRR_PAX4_03, GOBP_WOUND_HEALING, GOBP_EPIDERMAL_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, MODULE_285
GO Biological Process (7): regulation of antibacterial peptide production (GO:0002786), epidermis development (GO:0008544), peptide cross-linking (GO:0018149), keratinocyte differentiation (GO:0030216), keratinization (GO:0031424), wound healing (GO:0042060), intermediate filament cytoskeleton organization (GO:0045104)
GO Molecular Function (3): structural molecule activity (GO:0005198), cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (10): cornified envelope (GO:0001533), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), desmosome (GO:0030057), intermediate filament cytoskeleton (GO:0045111), extracellular exosome (GO:0070062), cytoskeleton (GO:0005856), intermediate filament (GO:0005882), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Keratinization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| antibacterial peptide production | 1 |
| regulation of antimicrobial peptide production | 1 |
| tissue development | 1 |
| protein modification process | 1 |
| epidermal cell differentiation | 1 |
| skin development | 1 |
| keratinocyte differentiation | 1 |
| multicellular organismal process | 1 |
| response to wounding | 1 |
| tissue regeneration | 1 |
| cytoskeleton organization | 1 |
| intermediate filament-based process | 1 |
| molecular_function | 1 |
| cell adhesion molecule binding | 1 |
| binding | 1 |
| plasma membrane | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cell-cell junction | 1 |
| cytoskeleton | 1 |
| extracellular vesicle | 1 |
| intracellular membraneless organelle | 1 |
| intermediate filament cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1588 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EVPL | PPL | O60437 | 980 |
| EVPL | ABL1 | P00519 | 958 |
| EVPL | DSP | P15924 | 923 |
| EVPL | DSG1 | Q02413 | 833 |
| EVPL | DSG3 | P32926 | 817 |
| EVPL | PKP1 | Q13835 | 775 |
| EVPL | GOLGA4 | Q13439 | 771 |
| EVPL | IVL | P07476 | 766 |
| EVPL | EIF3A | Q14152 | 764 |
| EVPL | MAK | P20794 | 762 |
| EVPL | DOK1 | Q99704 | 749 |
| EVPL | DST | Q03001 | 744 |
| EVPL | LORICRIN | P23490 | 737 |
| EVPL | A2ML1 | A8K2U0 | 694 |
| EVPL | TGM1 | P22735 | 681 |
IntAct
99 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SGF29 | NDC80 | psi-mi:“MI:0914”(association) | 0.840 |
| AATF | NGDN | psi-mi:“MI:0914”(association) | 0.810 |
| ZSCAN12 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| FRMD1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| RBM24 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| ACAD9 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| SSBP2 | CLEC18A | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| EVPL | CORO1C | psi-mi:“MI:0915”(physical association) | 0.400 |
| Bcas2 | PEX10 | psi-mi:“MI:0914”(association) | 0.350 |
| Ctnnbl1 | LCMT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TSNAX | psi-mi:“MI:0914”(association) | 0.350 | |
| Jup | psi-mi:“MI:0914”(association) | 0.350 | |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PI4KA | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| PDE4DIP | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| CCNYL1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDK15 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| ACAD9 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| ITGA9 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| SUSD3 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| DDX19B | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| ZSCAN20 | ZNF197 | psi-mi:“MI:0914”(association) | 0.350 |
| FCF1 | SULT2B1 | psi-mi:“MI:0914”(association) | 0.350 |
| TIFAB | DDX3X | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (127): EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Co-fractionation), EVPL (Co-fractionation), EVPL (Co-fractionation), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS), EVPL (Proximity Label-MS), EVPL (Affinity Capture-MS), EVPL (Affinity Capture-MS)
ESM2 similar proteins: A0A8M2BID5, A0A8M9PQ61, A1Z7A6, D3ZHV2, E9Q557, F1LMV6, F1M0Z1, G3V7L1, O43150, O60229, O60437, O75962, O97592, O97902, P0CE94, P0CE95, P10911, P11530, P11531, P11532, P11533, P15924, P30427, P33175, P46939, Q03001, Q0KL02, Q15149, Q1AAU6, Q1LUA6, Q5GN48, Q6ZWR6, Q7SIG6, Q8CIS0, Q8NF91, Q8WXH0, Q91ZU6, Q92817, Q95RG8, Q9BXL7
Diamond homologs: A0A8M2BID5, A0A8M9PQ61, D3ZHV2, E9Q557, F1LMV6, P15924, P30427, P58107, Q15149, Q8R0W0, Q92817, Q9D952, Q9JI55, Q9QXS1, A8MZ36, Q03001, Q91ZU6, Q9QXZ0, Q9UPN3, O60437, Q9R269
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
433 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 373 |
| Likely benign | 32 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3216 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:76005293:CCTA:C | acceptor_loss | 1.0000 |
| 17:76005296:A:AG | acceptor_gain | 1.0000 |
| 17:76005296:AGC:A | acceptor_loss | 1.0000 |
| 17:76005297:G:A | acceptor_loss | 1.0000 |
| 17:76005297:G:GA | acceptor_gain | 1.0000 |
| 17:76005297:GC:G | acceptor_gain | 1.0000 |
| 17:76005297:GCA:G | acceptor_gain | 1.0000 |
| 17:76005297:GCAA:G | acceptor_gain | 1.0000 |
| 17:76011535:T:TA | donor_gain | 1.0000 |
| 17:76011571:TGTAC:T | donor_loss | 1.0000 |
| 17:76011572:GTACC:G | donor_loss | 1.0000 |
| 17:76011573:TACC:T | donor_loss | 1.0000 |
| 17:76011574:A:C | donor_loss | 1.0000 |
| 17:76011666:CTC:C | acceptor_gain | 1.0000 |
| 17:76011667:TCCTG:T | acceptor_loss | 1.0000 |
| 17:76011668:CCTGG:C | acceptor_loss | 1.0000 |
| 17:76011669:C:CA | acceptor_loss | 1.0000 |
| 17:76011669:C:CC | acceptor_gain | 1.0000 |
| 17:76011670:T:A | acceptor_loss | 1.0000 |
| 17:76011679:C:CT | acceptor_gain | 1.0000 |
| 17:76011680:A:T | acceptor_gain | 1.0000 |
| 17:76011766:TCTCA:T | donor_loss | 1.0000 |
| 17:76011767:CTCA:C | donor_loss | 1.0000 |
| 17:76011768:TCACC:T | donor_loss | 1.0000 |
| 17:76011769:CACCT:C | donor_loss | 1.0000 |
| 17:76011770:A:C | donor_loss | 1.0000 |
| 17:76011771:C:CG | donor_loss | 1.0000 |
| 17:76011878:TAGTC:T | acceptor_gain | 1.0000 |
| 17:76011880:GTC:G | acceptor_gain | 1.0000 |
| 17:76011881:TC:T | acceptor_gain | 1.0000 |
AlphaMissense
13192 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:76007615:C:G | A1864P | 0.997 |
| 17:76007618:C:G | A1863P | 0.997 |
| 17:76007447:C:G | A1920P | 0.996 |
| 17:76007491:C:T | G1905D | 0.996 |
| 17:76007614:G:T | A1864D | 0.996 |
| 17:76007496:G:C | F1903L | 0.995 |
| 17:76007496:G:T | F1903L | 0.995 |
| 17:76007498:A:G | F1903L | 0.995 |
| 17:76007624:C:G | A1861P | 0.995 |
| 17:76007632:A:G | L1858P | 0.995 |
| 17:76007878:A:G | F1776S | 0.995 |
| 17:76008038:A:G | W1723R | 0.995 |
| 17:76008038:A:T | W1723R | 0.995 |
| 17:76023407:A:G | L122P | 0.995 |
| 17:76008036:C:A | W1723C | 0.994 |
| 17:76008036:C:G | W1723C | 0.994 |
| 17:76023563:A:G | L97P | 0.994 |
| 17:76023398:C:G | R125P | 0.993 |
| 17:76007219:C:G | A1996P | 0.992 |
| 17:76007401:A:G | L1935P | 0.992 |
| 17:76007446:G:T | A1920D | 0.992 |
| 17:76007492:C:G | G1905R | 0.992 |
| 17:76007391:C:A | Q1938H | 0.991 |
| 17:76007391:C:G | Q1938H | 0.991 |
| 17:76024071:C:G | A50P | 0.991 |
| 17:76007374:A:G | L1944P | 0.990 |
| 17:76007561:C:G | A1882P | 0.990 |
| 17:76007725:A:T | I1827N | 0.990 |
| 17:76023572:A:G | L94P | 0.990 |
| 17:76007491:C:A | G1905V | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000066499 (17:76027855 A>G), RS1000085364 (17:76018266 G>A), RS1000086153 (17:76022070 G>C), RS1000379281 (17:76012896 C>T), RS1000640245 (17:76006583 C>T), RS1000885310 (17:76010860 A>C), RS1001050404 (17:76008212 T>G), RS1001066675 (17:76026482 G>A,C), RS1001387633 (17:76027290 G>T), RS1001499022 (17:76020615 T>A), RS1001598088 (17:76021716 CTCGCCGTCG>C), RS1001748329 (17:76015402 G>A), RS1002398692 (17:76025741 C>A), RS1002454968 (17:76012211 G>A,T), RS1002486171 (17:76012491 C>T)
Disease associations
OMIM: gene MIM:601590 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Tourette syndrome | No Known Disease Relationship | Unknown |
Mondo (1): Tourette syndrome (MONDO:0007661)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007666_14 | Depressive symptom improvement | 4.000000e-06 |
| GCST009391_1146 | Metabolite levels | 7.000000e-06 |
| GCST010107_20 | L-selectin levels | 7.000000e-06 |
| GCST010726_70 | Periventricular white matter hyperintensities | 7.000000e-09 |
| GCST010727_41 | Deep white matter hyperintensities | 2.000000e-14 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007006 | depressive symptom measurement |
| EFO:0010457 | Alpha ketoglutarate measurement |
| EFO:0008202 | L-Selectin measurement |
| EFO:0005665 | white matter hyperintensity measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005879 | Tourette Syndrome | C10.228.140.079.898; C10.228.662.825.800; C10.574.500.850; C16.320.400.820; F03.625.992.850 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, decreases methylation, decreases expression | 2 |
| sodium arsenite | increases expression | 2 |
| Air Pollutants | increases expression, affects cotreatment, increases abundance, increases oxidation | 2 |
| Benzo(a)pyrene | increases mutagenesis, decreases methylation, increases methylation | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | affects cotreatment, decreases methylation | 1 |
| dicrotophos | increases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, decreases expression, increases expression, affects cotreatment | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | decreases response to substance | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Calcitriol | increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Dinitrochlorobenzene | affects binding | 1 |
| Furaldehyde | affects cotreatment, affects localization, decreases expression | 1 |
| Lead | decreases expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
Clinical trials (associated diseases)
183 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00152750 | PHASE4 | UNKNOWN | Study of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD |
| NCT00226824 | PHASE4 | TERMINATED | Safety Study of Galantamine in Tic Disorders |
| NCT00241176 | PHASE4 | COMPLETED | Open Label Trial of Aripiprazole in Children and Adolescents With Tourette’s Disorder |
| NCT00370838 | PHASE4 | COMPLETED | Comparison of Keppra and Clonidine in the Treatment of Tics |
| NCT01018056 | PHASE4 | COMPLETED | Developing New Treatments for Tourette Syndrome: Therapeutic Trials With Modulators of Glutamatergic Neurotransmission |
| NCT01547000 | PHASE4 | COMPLETED | Guanfacine in Children With Tic Disorders |
| NCT03239210 | PHASE4 | COMPLETED | Effects of Ondansetron in Obsessive-compulsive and Tic Disorders |
| NCT00004376 | PHASE3 | COMPLETED | Phase III Randomized, Double-Blind, Placebo-Controlled Study of Guanfacine for Tourette Syndrome and Attention Deficit Hyperactivity Disorder |
| NCT00206323 | PHASE3 | COMPLETED | A Randomized, Placebo-controlled, Tourette Syndrome Study. |
| NCT00206336 | PHASE3 | COMPLETED | An Open-label Study to Determine the Efficacy and Safety of Topiramate in the Treatment of Tourette Syndrome. |
| NCT00478842 | PHASE3 | COMPLETED | Pallidal Stimulation and Gilles de la Tourette Syndrome |
| NCT00681863 | PHASE3 | TERMINATED | Open-label Extension Study of Pramipexole in the Treatment of Children and Adolescents With Tourette Syndrome |
| NCT01501695 | PHASE3 | COMPLETED | Phase III Study of 5LGr to Treat Tic Disorder |
| NCT03087201 | PHASE3 | COMPLETED | CANNAbinoids in the Treatment of TICS (CANNA-TICS) |
| NCT03487783 | PHASE3 | COMPLETED | Aripiprazole Oral Solution in the Treatment of Children and Adolescents With Tourette’s Syndrome |
| NCT03567291 | PHASE3 | TERMINATED | Evaluation of Safety and Tolerability of Long-term TEV-50717 (Deutetrabenazine) for Treatment of Tourette Syndrome in Children and Adolescents |
| NCT03571256 | PHASE3 | COMPLETED | A Study to Test if TEV-50717 is Effective in Relieving Tics Associated With Tourette Syndrome (TS) |
| NCT06021522 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate Long-term Safety of Ecopipam Tablets in Children, Adolescents and Adults With Tourette’s Disorder |
| NCT00004393 | PHASE2 | COMPLETED | Phase II Double Blind Placebo Controlled Trial of Risperidone in Tourette Syndrome |
| NCT00004652 | PHASE2 | COMPLETED | Phase II Pilot Controlled Study of Short Vs Longer Term Pimozide (Orap) Therapy in Tourette Syndrome |
| NCT00231985 | PHASE2 | COMPLETED | Effectiveness of Behavior Therapy and Psychosocial Therapy for the Treatment of Tourette Syndrome and Chronic Tic Disorder |
| NCT00311909 | PHASE2 | COMPLETED | Thalamic Deep Brain Stimulation for Tourette Syndrome |
| NCT00529308 | PHASE2 | COMPLETED | Transcranial Magnetic Stimulation (TMS) for Individuals With Tourette’s Syndrome |
| NCT00558467 | PHASE2 | COMPLETED | Pramipexole Pilot Phase II Study in Children and Adolescents With Tourette Disorder According to DSM-IV Criteria |
| NCT01043549 | PHASE2 | TERMINATED | Repetitive Transcranial Magnetic Stimulation of the Posterior Parietal Cortex in Patients Suffering From Gilles de la Tourette Syndrome |
| NCT01133353 | PHASE2 | WITHDRAWN | A Study of the Effectiveness and Safety of Tetrabenazine MR in Pediatric Subjects With Tourette’s Syndrome |
| NCT01475383 | PHASE2 | WITHDRAWN | Study Evaluating The Safety And Efficacy Of PF-03654746 In Adult Subjects With Tourette’s Syndrome |
| NCT01647269 | PHASE2 | COMPLETED | A Trial of Bilateral Deep Brain Stimulation to the Globus Pallidus Internum in Tourette Syndrome |
| NCT01904773 | PHASE2 | COMPLETED | Safety, Tolerability, Pharmacokinetic, and Efficacy Study of AZD5213 in Adolescents With Tourette’s Disorder |
| NCT02102698 | PHASE2 | COMPLETED | Ecopipam Treatment of Tourette’s Syndrome in Subjects 7-17 Years |
| NCT02217007 | PHASE2 | WITHDRAWN | A Trial Evaluating the Efficacy, Safety, and Pharmacokinetics of SNC-102 in Subjects With Tourette Syndrome |
| NCT02247206 | PHASE2 | COMPLETED | VoIP Delivered Behavior Therapy for Tourette Syndrome |
| NCT02581865 | PHASE2 | COMPLETED | Safety and Efficacy Study of NBI-98854 in Adults With Tourette Syndrome |
| NCT02619084 | PHASE2 | COMPLETED | Subthalamic Stimulation in Tourette’s Syndrome |
| NCT02679079 | PHASE2 | COMPLETED | Safety and Efficacy Study of NBI-98854 in Children and Adolescents With Tourette Syndrome |
| NCT02879578 | PHASE2 | COMPLETED | Safety and Tolerability Study of NBI-98854 for the Treatment of Subjects With Tourette Syndrome |
| NCT03066193 | PHASE2 | COMPLETED | Efficacy of a Therapeutic Combination of Dronabinol and PEA for Tourette Syndrome |
| NCT03247244 | PHASE2 | TERMINATED | Safety and Efficacy of Cannabis in Tourette Syndrome |
| NCT03325010 | PHASE2 | COMPLETED | Safety, Tolerability, and Efficacy of NBI-98854 for the Treatment of Pediatric Subjects With Tourette Syndrome |
| NCT03444038 | PHASE2 | COMPLETED | Open-Label Safety and Tolerability Study of NBI-98854 for the Treatment of Pediatric Subjects With Tourette Syndrome |
Related Atlas pages
- Associated diseases: Tourette syndrome