EWSR1
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Also known as EWS
Summary
EWSR1 (EWS RNA binding protein 1, HGNC:3508) is a protein-coding gene on chromosome 22q12.2, encoding RNA-binding protein EWS (Q01844). Binds to ssRNA containing the consensus sequence 5’-AGGUAA-3’. It is a common-essential gene (DepMap: required in 98.7% of cancer cell lines).
This gene encodes a multifunctional protein that is involved in various cellular processes, including gene expression, cell signaling, and RNA processing and transport. The protein includes an N-terminal transcriptional activation domain and a C-terminal RNA-binding domain. Chromosomal translocations between this gene and various genes encoding transcription factors result in the production of chimeric proteins that are involved in tumorigenesis. These chimeric proteins usually consist of the N-terminal transcriptional activation domain of this protein fused to the C-terminal DNA-binding domain of the transcription factor protein. Mutations in this gene, specifically a t(11;22)(q24;q12) translocation, are known to cause Ewing sarcoma as well as neuroectodermal and various other tumors. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 1 and 14.
Source: NCBI Gene 2130 — RefSeq curated summary.
At a glance
- Gene–disease (curated): amyotrophic lateral sclerosis (Moderate, GenCC)
- GWAS associations: 4
- Clinical variants (ClinVar): 123 total
- Phenotypes (HPO): 20
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): activating (oncogene-like) across 2 cancer types
- Cancer dependency (DepMap): dependent in 98.7% of screened cell lines (common-essential)
- Transcription factor: yes — 62 downstream targets (CollecTRI)
- MANE Select transcript:
NM_005243
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3508 |
| Approved symbol | EWSR1 |
| Name | EWS RNA binding protein 1 |
| Location | 22q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EWS |
| Ensembl gene | ENSG00000182944 |
| Ensembl biotype | protein_coding |
| OMIM | 133450 |
| Entrez | 2130 |
Gene structure
Transcript identifiers
Ensembl transcripts: 94 — 87 protein_coding, 7 retained_intron
ENST00000331029, ENST00000332035, ENST00000332050, ENST00000333395, ENST00000360091, ENST00000397938, ENST00000406548, ENST00000414183, ENST00000415761, ENST00000436425, ENST00000437155, ENST00000444626, ENST00000447973, ENST00000455726, ENST00000469669, ENST00000479135, ENST00000483415, ENST00000483629, ENST00000485037, ENST00000493426, ENST00000610553, ENST00000629659, ENST00000889471, ENST00000889472, ENST00000889473, ENST00000889474, ENST00000889475, ENST00000889476, ENST00000889477, ENST00000889478, ENST00000889479, ENST00000889480, ENST00000889481, ENST00000889482, ENST00000889483, ENST00000889484, ENST00000889485, ENST00000889486, ENST00000889487, ENST00000889488, ENST00000889489, ENST00000889490, ENST00000889491, ENST00000889492, ENST00000889494, ENST00000889495, ENST00000889497, ENST00000889499, ENST00000889500, ENST00000889502, ENST00000889504, ENST00000889505, ENST00000889506, ENST00000889507, ENST00000889508, ENST00000889509, ENST00000889510, ENST00000889511, ENST00000889512, ENST00000889513, ENST00000889514, ENST00000925319, ENST00000925320, ENST00000925321, ENST00000925322, ENST00000925323, ENST00000925324, ENST00000925325, ENST00000925326, ENST00000925327, ENST00000925328, ENST00000925329, ENST00000925330, ENST00000925331, ENST00000925332, ENST00000925333, ENST00000925334, ENST00000959975, ENST00000959976, ENST00000959977, ENST00000959978, ENST00000959979, ENST00000959980, ENST00000959981, ENST00000959982, ENST00000959983, ENST00000959984, ENST00000959985, ENST00000959986, ENST00000959987, ENST00000959988, ENST00000959989, ENST00000959990, ENST00000959991
RefSeq mRNA: 5 — MANE Select: NM_005243
NM_001163285, NM_001163286, NM_001163287, NM_005243, NM_013986
CCDS: CCDS13851, CCDS13852, CCDS54512, CCDS54513, CCDS54514
Canonical transcript exons
ENST00000397938 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001300293 | 29291562 | 29291599 |
| ENSE00001787873 | 29288606 | 29288786 |
| ENSE00001941182 | 29268268 | 29268349 |
| ENSE00003470269 | 29292488 | 29292606 |
| ENSE00003495391 | 29278030 | 29278216 |
| ENSE00003513248 | 29299599 | 29299851 |
| ENSE00003523502 | 29282390 | 29282557 |
| ENSE00003524528 | 29296239 | 29296368 |
| ENSE00003531289 | 29272380 | 29272431 |
| ENSE00003534354 | 29297827 | 29297949 |
| ENSE00003554408 | 29292137 | 29292169 |
| ENSE00003570564 | 29286923 | 29287134 |
| ENSE00003584318 | 29273741 | 29273864 |
| ENSE00003589287 | 29298733 | 29298895 |
| ENSE00003671623 | 29272216 | 29272252 |
| ENSE00003684056 | 29299234 | 29299331 |
| ENSE00003901472 | 29300122 | 29300521 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.13.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 48.8416 / max 569.3175, expressed in 1816 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 191598 | 45.4480 | 1815 |
| 191599 | 2.1794 | 1119 |
| 191597 | 1.2142 | 836 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 99.13 | gold quality |
| left testis | UBERON:0004533 | 99.05 | gold quality |
| right testis | UBERON:0004534 | 99.05 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.96 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.95 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.90 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.90 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.85 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.84 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.84 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.84 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.83 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.81 | gold quality |
| cortical plate | UBERON:0005343 | 98.81 | gold quality |
| body of uterus | UBERON:0009853 | 98.80 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.79 | gold quality |
| body of pancreas | UBERON:0001150 | 98.78 | gold quality |
| right ovary | UBERON:0002118 | 98.78 | gold quality |
| adrenal cortex | UBERON:0001235 | 98.77 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.76 | gold quality |
| ventricular zone | UBERON:0003053 | 98.76 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.74 | gold quality |
| left ovary | UBERON:0002119 | 98.73 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.67 | gold quality |
| left uterine tube | UBERON:0001303 | 98.67 | gold quality |
| endocervix | UBERON:0000458 | 98.64 | gold quality |
| lymph node | UBERON:0000029 | 98.59 | gold quality |
| adrenal gland | UBERON:0002369 | 98.59 | gold quality |
| transverse colon | UBERON:0001157 | 98.58 | gold quality |
| granulocyte | CL:0000094 | 98.56 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
62 targets.
| Target | Regulation |
|---|---|
| ABCC3 | |
| AKT1S1 | |
| ATF1 | Unknown |
| AURKA | Activation |
| AURKB | Activation |
| BCL2L1 | |
| CASP3 | |
| CAV1 | |
| CCK | Unknown |
| CCND1 | Activation |
| CCNE1 | Unknown |
| CD99 | |
| CDKN1A | Unknown |
| CDKN1B | |
| CDKN1C | Unknown |
| CEL | |
| CFL1 | |
| COL11A2 | |
| CREBBP | |
| CSF1R | |
| DKK1 | |
| DKK2 | |
| EGR2 | Unknown |
| EWSR1 | |
| EYA3 | |
| EZH2 | |
| FGF10 | Unknown |
| FLI1 | |
| GJA1 | |
| GLI1 | Unknown |
Upstream regulators (CollecTRI, top): ATF1, EWSR1, FLI1, NR0B1, PAX1
miRNA regulators (miRDB)
23 targeting EWSR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-8076 | 99.78 | 68.52 | 1170 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-8084 | 99.73 | 69.57 | 1760 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-548AV-5P | 99.60 | 70.84 | 2107 |
| HSA-MIR-548K | 99.60 | 70.84 | 2107 |
| HSA-MIR-8054 | 99.48 | 70.81 | 2084 |
| HSA-MIR-582-5P | 99.47 | 70.79 | 2635 |
| HSA-MIR-1264 | 99.25 | 66.81 | 1317 |
| HSA-MIR-4528 | 99.18 | 69.77 | 1936 |
| HSA-MIR-499A-3P | 99.18 | 69.20 | 1392 |
| HSA-MIR-499B-3P | 99.18 | 69.27 | 1391 |
| HSA-MIR-4999-3P | 99.11 | 65.55 | 424 |
| HSA-MIR-5583-3P | 99.06 | 65.68 | 1018 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-412-3P | 98.86 | 66.89 | 712 |
| HSA-MIR-6754-3P | 98.84 | 66.60 | 889 |
| HSA-MIR-1178-3P | 98.57 | 67.09 | 890 |
| HSA-MIR-6837-3P | 98.42 | 66.71 | 1149 |
| HSA-MIR-597-3P | 96.46 | 68.03 | 1035 |
| HSA-MIR-7108-5P | 96.42 | 66.17 | 598 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 98.7% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 40)
- Induction of the interleukin-2/15 receptor beta-chain by the EWS-WT1 translocation product. (PMID:11960373)
- Molecular genetic characterization of the EWS/ATF1 fusion gene in clear cell sarcoma of tendons and aponeuroses. (PMID:11992546)
- The AF2 domain of the orphan nuclear receptor TEC is essential for the transcriptional activity of the oncogenic fusion protein EWS (PMID:12049818)
- The transcription factor gene CIZ/NMP4 is recurrently involved in acute leukemia through fusion with either EWSR1 or TAF15. (PMID:12359745)
- EWS may function as a co-activator of CBP-dependent transcription factors (PMID:12459554)
- role in upregulation of Id2 in Ewing sarcoma (PMID:12527902)
- identification of its target genes as a chimeric protein with ATF-1 (PMID:12527906)
- present findings indicate that expression of EWS protein in the various subcellular compartments is affected by the methylation process, in particular by the availability of intracellular S-adenosyl-L-methionine (PMID:12915128)
- EWS interacts with FLI1 and their oncogenic fusion protein. (PMID:14534527)
- oncogenic rearrangement of EWS to produce EWS/Fli-1 may enhance the antiapoptotic effect of Brn-3a and inhibit its ability to promote neuronal differentiation. (PMID:15021903)
- First time 2 different EWS fusion transcripts found in same patient. It may be EWS translocations are not first step in Ewing’s sarcoma (PMID:15044653)
- These findings identify the repression of insulin-like growth factor binding protein 3 gene by EWS/FLI-1 as a key event in the development of Ewing’s sarcoma. (PMID:15282325)
- Simultaneous expression of the EWSR1-ATF1 and MITF-M transcripts in clear cell carcinoma has led to the proposal that the MITF-M promoter is transactivated by EWSR1-ATF1. (PMID:15884099)
- Oct-4-mediated transactivation is stimulated by EWS (PMID:15917470)
- EWS-Fli1 may play a role in the regulation of PDGF-induced tumor proliferation-signaling enzymes via PLD2 expression in Ewing sarcoma cells (PMID:15919668)
- There was evidence of EWS oncogene protein fusion in this sarcoma. (PMID:16327442)
- Regions in the N-terminal transcriptional activation domain guide the subnuclear partition of EWS protein and contain another but different nuclear localization/retention signal that allows nucleocytoplasmic shuttling of the N-terminal domain. (PMID:16965792)
- The gene that was most reproducibly up-regulated by EWS/FLI was NR0B1. (PMID:17114343)
- variation in overall gene expression patterns downstream of EWS-FLIl was observed, but also differential regulation of directly EWS-FLI1-bound genes (PMID:17163154)
- EWS/FLI1 has a role in regulating tumor angiogenesis in Ewing’s sarcoma via suppression of thrombospondins TSP1 and TSP2 (PMID:17638877)
- A single tumor carrying a t(12;22) translocation expressed a hitherto unknown EWSR1-DDIT3 fusion transcript (13-3) linking the complete RNA-binding domain of EWSR1 with a short piece of the 5’-UTR (PMID:17647282)
- report for the first time the presence of EWSR1-CREB1 in angiomatoid fibrous histiocytoma, which now appears to be the most frequent gene fusion in this tumor (PMID:17724745)
- In mesenchymal stem cells EWS/FLI1 changed morphology from a mesenchymal spindle shape to a small round-to-polygonal cell, downregulated mesenchyme-positive markers CD10 & CD13 and the upregulated Ewing’s family tumor markers CD54, CD99, CD117, & CD271. (PMID:18212050)
- None of the 12 uterine tumors with neuroectodermal differentiation had a detectable rearrangement in the EWSR1 gene. (PMID:18223324)
- role of EWS/LI1 as an inhibitor of cellular senescence implicating the retinoblastoma family of proteins as key mediators of this inhibition (PMID:18271016)
- EWSR1-PBX1 fusion gene resulting from a t(1;22)(q23;q12) translocation is associated with myoepithelioma.(\ (PMID:18383210)
- EWS-FLI1 directly stimulates cyclin D1 gene transcription. (PMID:18413612)
- EWS/FLI mediates transcriptional repression via NKX2.2 during oncogenic transformation in Ewing’s sarcoma (PMID:18414662)
- EWS contributes to start site recognition in TATA-less mammalian promoters. (PMID:18453593)
- Analyzed the status of SMARCB1 protein expression in sarcomas associated with chromosomal translocation involving EWS. (PMID:18580682)
- In this study, the vast majority of extraskeletal myxoid chondrosarcomas are associated with a rearrangement at the EWSR1 locus (22q12). (PMID:18587326)
- FUS, EWS and TAF15 proto-oncoproteins were targeted to stress granules induced by heat shock and oxidative stress (PMID:18620564)
- IGF1 is a common target gene of Ewing’s sarcoma fusion proteins EWS-FLI-1, EWS-ERG and FUS-ERG in mesenchymal progenitor cells (PMID:18648544)
- data obtained from this screen helped to identify IMR-90 cells, a human fetal fibroblast, that upon further manipulation can maintain stable EWS/FLI1 expression without the reported toxicity (PMID:18838963)
- results suggest that EWS-FLI1 inhibits normal limb development and accelerates the formation of poorly differentiated sarcomas (PMID:18974141)
- the mitotic kinases Aurora A and Aurora B are regulated by EWS-Fli1 fusion protein in Ewing sarcoma cells (PMID:19074838)
- temporally and spatially regulated functions of the EWS protein and, particularly, into its role in the regulation of the cell cycle and possibly cell differentiation. (PMID:19133275)
- In three Ewings sarcoma samples, copy number imbalances were detected in chromosomes 11 and 22 affecting the FLI1 and EWSR1 loci. (PMID:19144156)
- found that EWS-Oct-4-mediated transcriptional activation was inhibited by EWS-Oct-4 (V351P) protein in vivo. Thus, this mutation in the POU DNA-binding domain results in a dominant negative protein (PMID:19170206)
- indicated GLI1 as a direct transcriptional target of EWS-FLI1 (PMID:19189974)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ewsr1a | ENSDARG00000020258 |
| danio_rerio | ewsr1b | ENSDARG00000020465 |
| danio_rerio | ENSDARG00000117011 | |
| mus_musculus | Ewsr1 | ENSMUSG00000009079 |
| rattus_norvegicus | Ewsr1 | ENSRNOG00000009437 |
| drosophila_melanogaster | caz | FBGN0285954 |
| caenorhabditis_elegans | WBGENE00016173 |
Paralogs (2): FUS (ENSG00000089280), TAF15 (ENSG00000270647)
Protein
Protein identifiers
RNA-binding protein EWS — Q01844 (reviewed: Q01844)
Alternative names: EWS oncogene, Ewing sarcoma breakpoint region 1 protein
All UniProt accessions (11): Q01844, A0A0D9SFL3, B0QYJ3, B0QYJ4, B0QYJ5, B0QYJ6, B0QYJ7, B0QYK0, C9JGE3, F8WC90, H7BY36
UniProt curated annotations — full annotation on UniProt →
Function. Binds to ssRNA containing the consensus sequence 5’-AGGUAA-3’. Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.
Subunit / interactions. Binds POLR2C, SF1, calmodulin and RNA. Interacts with PTK2B/FAK2 and TDRD3. Binds calmodulin in the presence, but not in the absence, of calcium ion. Forms a complex with REC8, PRDM9, SYCP3 and SYCP1; complex formation is dependent of phosphorylated form of REC8 and requires PRDM9 bound to hotspot DNA; EWSR1 joins PRDM9 with the chromosomal axis through REC8.
Subcellular location. Nucleus. Cytoplasm. Cell membrane.
Tissue specificity. Ubiquitous.
Post-translational modifications. Phosphorylated; calmodulin-binding inhibits phosphorylation of Ser-266. Highly methylated on arginine residues. Methylation is mediated by PRMT1 and, at lower level by PRMT8.
Disease relevance. Ewing sarcoma (ES) [MIM:612219] A highly malignant, metastatic, primitive small round cell tumor of bone and soft tissue that affects children and adolescents. It belongs to the Ewing sarcoma family of tumors, a group of morphologically heterogeneous neoplasms that share the same cytogenetic features. They are considered neural tumors derived from cells of the neural crest. Ewing sarcoma represents the less differentiated form of the tumors. The protein represented in this entry is involved in disease pathogenesis. Chromosomal aberrations involving EWSR1 are found in patients with Ewing sarcoma. Translocation t(11;22)(q24;q12) with FLI1. Translocation t(7;22)(p22;q12) with ETV1. Translocation t(21;22)(q22;q21) with ERG. Translocation t(2;21;22)(q23;q22;q12) that forms a EWSR1-FEV fusion protein with potential oncogenic activity. A chromosomal aberration involving EWSR1 has been found in extraskeletal myxoid chondrosarcoma. Translocation t(9;22)(q22-31;q11-12) with NR4A3. A chromosomal aberration involving EWSR1 is associated with desmoplastic small round cell tumor (DSRCT). Translocation t(11;22)(p13;q12) with WT1. A chromosomal aberration involving EWSR1 is associated with malignant melanoma of soft parts (MMSP). Translocation t(12;22)(q13;q12) with ATF1. Malignant melanoma of soft parts, also known as soft tissue clear cell sarcoma, is a rare tumor developing in tendons and aponeuroses. A chromosomal aberration involving EWSR1 is associated with small round cell sarcoma. Translocation t(11;22)(p36.1;q12) with PATZ1. Angiomatoid fibrous histiocytoma (AFH) [MIM:612160] A distinct variant of malignant fibrous histiocytoma that typically occurs in children and adolescents and is manifest by nodular subcutaneous growth. Characteristic microscopic features include lobulated sheets of histiocyte-like cells intimately associated with areas of hemorrhage and cystic pseudovascular spaces, as well as a striking cuffing of inflammatory cells, mimicking a lymph node metastasis. The gene represented in this entry is involved in disease pathogenesis. Chromosomal aberrations involving EWSR1 are found in patients with angiomatoid fibrous histiocytoma. Translocation t(12;22)(q13;q12) with ATF1 generates a chimeric EWSR1/ATF1 protein. Translocation t(2;22)(q33;q12) with CREB1 generates a EWSR1/CREB1 fusion gene that is most common genetic abnormality in this tumor type. EFPS arise due to chromosomal translocations in which EWSR1 is fused to a variety of cellular transcription factors. EFPS are very potent transcriptional activators dependent on the EAD and a C-terminal DNA-binding domain contributed by the fusion partner. The spectrum of malignancies associated with EFPS are thought to arise via EFP-induced transcriptional deregulation, with the tumor phenotype specified by the EWSR1 fusion partner and cell type. Transcriptional repression of the transforming growth factor beta type II receptor (TGF beta RII) is an important target of the EWS-FLI1, EWS-ERG, or EWS-ETV1 oncogene.
Domain organisation. EWS activation domain (EAD) functions as a potent activation domain in EFPS. EWSR1 binds POLR2C but not POLR2E or POLR2G, whereas the isolated EAD binds POLR2E and POLR2G but not POLR2C. Cis-linked RNA-binding domain (RBD) can strongly and specifically repress trans-activation by the EAD.
Similarity. Belongs to the RRM TET family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q01844-1 | EWS | yes |
| Q01844-2 | EWS-B | |
| Q01844-3 | 3 | |
| Q01844-4 | 4 | |
| Q01844-5 | 5 | |
| Q01844-6 | 6 |
RefSeq proteins (5): NP_001156757, NP_001156758, NP_001156759, NP_005234, NP_053733 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000504 | RRM_dom | Domain |
| IPR001876 | Znf_RanBP2 | Domain |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Homologous_superfamily |
| IPR034869 | EWS_RRM | Domain |
| IPR034870 | TET_fam | Family |
| IPR035979 | RBD_domain_sf | Homologous_superfamily |
| IPR036443 | Znf_RanBP2_sf | Homologous_superfamily |
Pfam: PF00076, PF00641
UniProt features (117 total): modified residue 38, repeat 31, compositionally biased region 11, mutagenesis site 9, splice variant 6, strand 5, region of interest 5, helix 2, turn 2, domain 2, site 2, chain 1, sequence conflict 1, zinc finger region 1, short sequence motif 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2CPE | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q01844-F1 | 50.88 | 0.03 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 265 (breakpoint for translocation to form chimeric ewsr1/atf1 protein); 348–349 (breakpoint for insertion to form ewsr1-fev fusion protein)
Post-translational modifications (38): 266, 300, 302, 304, 309, 314, 317, 321, 439, 455, 464, 471, 471, 486, 490, 494, 500, 503, 506, 506 …
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 651 | no effect on nuclear targeting. |
| 652 | cytoplasmic localization. |
| 652 | no effect on nuclear targeting. |
| 653 | no effect on nuclear targeting. |
| 654 | no effect on nuclear targeting. |
| 655 | cytoplasmic localization. |
| 656 | cytoplasmic localization. |
| 648 | cytoplasmic localization. |
| 648 | no effect on nuclear targeting. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 230 (showing top):
RNGTGGGC_UNKNOWN, AP1_01, TGCGCANK_UNKNOWN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_22, PUJANA_CHEK2_PCC_NETWORK, MUELLER_PLURINET, MYCMAX_01, BLALOCK_ALZHEIMERS_DISEASE_UP, TGCTGAY_UNKNOWN, MODULE_123, MODULE_98, FISCHER_DREAM_TARGETS, ZHANG_BREAST_CANCER_PROGENITORS_UP
GO Biological Process (1): regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (8): transcription coregulator activity (GO:0003712), RNA binding (GO:0003723), calmodulin binding (GO:0005516), zinc ion binding (GO:0008270), identical protein binding (GO:0042802), nucleic acid binding (GO:0003676), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (7): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), plasma membrane (GO:0005886), Cajal body (GO:0015030), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein binding | 2 |
| binding | 2 |
| nuclear lumen | 2 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| transcription regulator activity | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| nuclear ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
3788 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EWSR1 | DHX9 | Q08211 | 991 |
| EWSR1 | CD99 | P14209 | 943 |
| EWSR1 | SNRPC | P09234 | 925 |
| EWSR1 | YBX1 | P16990 | 920 |
| EWSR1 | NR4A3 | Q92570 | 900 |
| EWSR1 | FLII | Q13045 | 896 |
| EWSR1 | WT1 | P19544 | 888 |
| EWSR1 | ETV1 | P50549 | 883 |
| EWSR1 | PATZ1 | Q9HBE1 | 880 |
| EWSR1 | FLI1 | Q01543 | 879 |
| EWSR1 | ATF1 | P18846 | 874 |
| EWSR1 | DROSHA | Q9NRR4 | 853 |
| EWSR1 | MAZ | P56270 | 845 |
| EWSR1 | CUX1 | P39880 | 832 |
| EWSR1 | CD99L2 | Q8TCZ2 | 825 |
IntAct
378 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EWSR1 | ATPAF2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| ATPAF2 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| MAPK1IP1L | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.740 |
| EWSR1 | MAPK1IP1L | psi-mi:“MI:0915”(physical association) | 0.740 |
| EWSR1 | PLSCR1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| PLSCR1 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| EWSR1 | SMAD4 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ATXN3 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| EP300 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| EWSR1 | RASSF1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| RASSF1 | EWSR1 | psi-mi:“MI:0914”(association) | 0.570 |
| EWSR1 | EP300 | psi-mi:“MI:0915”(physical association) | 0.570 |
| EWSR1 | SEC24D | psi-mi:“MI:0915”(physical association) | 0.560 |
| EWSR1 | SEC24A | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAF2 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAF1 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EWSR1 | TFG | psi-mi:“MI:0915”(physical association) | 0.560 |
| SSBP3 | EWSR1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (1016): PLSCR1 (Two-hybrid), TRAF1 (Two-hybrid), TRAF2 (Two-hybrid), SEC24D (Two-hybrid), TFG (Two-hybrid), SEC24A (Two-hybrid), SSBP3 (Two-hybrid), PRR13 (Two-hybrid), ATPAF2 (Two-hybrid), MAPK1IP1L (Two-hybrid), PEF1 (Two-hybrid), EWSR1 (Reconstituted Complex), EWSR1 (Affinity Capture-MS), EWSR1 (Affinity Capture-MS), EWSR1 (Affinity Capture-MS)
ESM2 similar proteins: A0A0D1C8Z4, A5A6H4, A7VJC2, O88569, P04256, P07909, P09651, P09867, P17130, P19198, P21522, P22626, P35637, P48810, P49312, P51968, P51989, P51990, P51991, P51992, P56959, Q01844, Q08473, Q13151, Q22037, Q28009, Q28521, Q2HJ60, Q32P51, Q43472, Q5PQ53, Q5RBU8, Q61545, Q640A2, Q641Z8, Q6DC93, Q6URK4, Q7ZX83, Q8BG05, Q8EA81
Diamond homologs: O43120, P35637, P56959, Q01844, Q28009, Q61545, Q92804, Q94KD0, B5DGI7, O75526, P07909, P08199, P13383, P15771, P19338, P33240, P40561, P41891, P49310, Q03251, Q03878, Q05966, Q14498, Q27294, Q27W01, Q28BZ1, Q28IQ9, Q29RT0, Q3ZCE8, Q44554, Q44556, Q4R4J7, Q4R813, Q57014, Q5D018, Q5RC80, Q5RDA3, Q5RF26, Q6IRQ4, Q6PH90
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MAPK1 | unknown | EWSR1 | phosphorylation |
| MAPK11 | unknown | EWSR1 | phosphorylation |
| MAPK14 | unknown | EWSR1 | phosphorylation |
| MAPK3 | unknown | EWSR1 | phosphorylation |
| Gbeta | unknown | EWSR1 | phosphorylation |
| ERK1/2 | unknown | EWSR1 | phosphorylation |
| PRKCA | “down-regulates activity” | EWSR1 | phosphorylation |
| PRKCB | “down-regulates activity” | EWSR1 | phosphorylation |
| SF1 | down-regulates | EWSR1 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 171 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| DNA Double Strand Break Response | 5 | 21.1× | 9e-04 |
| Homology Directed Repair | 5 | 13.7× | 2e-03 |
| HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | 5 | 13.7× | 2e-03 |
| DNA Double-Strand Break Repair | 6 | 13.2× | 1e-03 |
| GSK3B-mediated proteasomal degradation of PD-L1(CD274) | 6 | 12.6× | 1e-03 |
| DNA Damage Recognition in GG-NER | 5 | 12.6× | 2e-03 |
| GSK3B and BTRC:CUL1-mediated-degradation of NFE2L2 | 5 | 11.0× | 3e-03 |
| Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks | 8 | 10.4× | 4e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitophagy | 7 | 14.9× | 1e-04 |
| intrinsic apoptotic signaling pathway | 6 | 14.4× | 7e-04 |
| autophagosome maturation | 6 | 14.1× | 7e-04 |
| positive regulation of type I interferon production | 5 | 14.1× | 3e-03 |
| cellular response to UV | 5 | 9.9× | 8e-03 |
| G1/S transition of mitotic cell cycle | 7 | 9.4× | 1e-03 |
| autophagosome assembly | 6 | 9.1× | 4e-03 |
| positive regulation of protein ubiquitination | 6 | 8.6× | 5e-03 |
Disease & clinical
Cancer significance
From CIViC — curated cancer-variant interpretation:
Fusions between EWSR1 and multiple 3` partners are regularly identified in soft tissue sarcomas and can aid in differential diagnosis. The fusion product usually contains the N-terminal transcription-activating domain of EWSR1 and the C-terminal DNA-binding domain of the fusion partner, generating a novel transcription factor.
From intOGen — cancer-driver classification: activating (oncogene-like) across 2 cancer types — ES, GBM.
Clinical variants and AI predictions
ClinVar
123 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 58 |
| Likely benign | 12 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2607 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:29268348:GG:G | donor_gain | 1.0000 |
| 22:29268349:GG:G | donor_gain | 1.0000 |
| 22:29268349:GGT:G | donor_loss | 1.0000 |
| 22:29272250:GGG:G | donor_gain | 1.0000 |
| 22:29272251:GG:G | donor_gain | 1.0000 |
| 22:29272251:GGG:G | donor_gain | 1.0000 |
| 22:29272252:GG:G | donor_gain | 1.0000 |
| 22:29272252:GGT:G | donor_loss | 1.0000 |
| 22:29272253:G:GG | donor_gain | 1.0000 |
| 22:29272254:T:G | donor_loss | 1.0000 |
| 22:29272375:TGCA:T | acceptor_loss | 1.0000 |
| 22:29272376:GCAGC:G | acceptor_loss | 1.0000 |
| 22:29272378:A:AG | acceptor_gain | 1.0000 |
| 22:29272379:G:GA | acceptor_gain | 1.0000 |
| 22:29272379:GCT:G | acceptor_gain | 1.0000 |
| 22:29273733:T:A | acceptor_gain | 1.0000 |
| 22:29273740:GGC:G | acceptor_gain | 1.0000 |
| 22:29273740:GGCAT:G | acceptor_gain | 1.0000 |
| 22:29273865:G:A | donor_loss | 1.0000 |
| 22:29273865:G:GG | donor_gain | 1.0000 |
| 22:29273866:TAA:T | donor_loss | 1.0000 |
| 22:29278026:CTAG:C | acceptor_loss | 1.0000 |
| 22:29278027:TAG:T | acceptor_loss | 1.0000 |
| 22:29278029:GGTT:G | acceptor_gain | 1.0000 |
| 22:29278217:G:C | donor_loss | 1.0000 |
| 22:29278218:T:A | donor_loss | 1.0000 |
| 22:29286921:A:AG | acceptor_gain | 1.0000 |
| 22:29286921:A:AT | acceptor_loss | 1.0000 |
| 22:29286922:G:GT | acceptor_gain | 1.0000 |
| 22:29286922:GC:G | acceptor_gain | 1.0000 |
AlphaMissense
4227 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:29292545:T:C | L368S | 1.000 |
| 22:29296311:G:C | A413P | 1.000 |
| 22:29296312:C:A | A413D | 1.000 |
| 22:29296318:T:A | V415E | 1.000 |
| 22:29296351:C:A | A426D | 1.000 |
| 22:29298876:G:C | D521H | 1.000 |
| 22:29298876:G:T | D521Y | 1.000 |
| 22:29298877:A:C | D521A | 1.000 |
| 22:29298877:A:G | D521G | 1.000 |
| 22:29298877:A:T | D521V | 1.000 |
| 22:29298878:C:A | D521E | 1.000 |
| 22:29298878:C:G | D521E | 1.000 |
| 22:29298879:T:A | W522R | 1.000 |
| 22:29298879:T:C | W522R | 1.000 |
| 22:29298880:G:C | W522S | 1.000 |
| 22:29298880:G:T | W522L | 1.000 |
| 22:29298881:G:C | W522C | 1.000 |
| 22:29298881:G:T | W522C | 1.000 |
| 22:29298885:T:A | C524S | 1.000 |
| 22:29298885:T:C | C524R | 1.000 |
| 22:29298886:G:A | C524Y | 1.000 |
| 22:29298886:G:C | C524S | 1.000 |
| 22:29298886:G:T | C524F | 1.000 |
| 22:29298887:T:G | C524W | 1.000 |
| 22:29299238:T:A | C529S | 1.000 |
| 22:29299238:T:C | C529R | 1.000 |
| 22:29299239:G:A | C529Y | 1.000 |
| 22:29299239:G:C | C529S | 1.000 |
| 22:29299239:G:T | C529F | 1.000 |
| 22:29299240:T:G | C529W | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000110207 (22:29280325 C>G,T), RS1000187053 (22:29266814 T>G), RS1000197310 (22:29295986 C>T), RS1000218198 (22:29267045 A>G), RS1000233730 (22:29268585 C>G,T), RS1000394967 (22:29297200 G>A), RS1000452916 (22:29274582 T>C), RS1000559842 (22:29300669 C>G,T), RS1000610237 (22:29284451 A>G), RS1000619244 (22:29290070 C>T), RS1000753651 (22:29289799 A>G), RS1000820868 (22:29289819 CTT>C,CT), RS1000913017 (22:29284759 C>A), RS1000923106 (22:29274735 A>G,T), RS1001013799 (22:29300869 C>G)
Disease associations
OMIM: gene MIM:133450 | disease phenotypes: MIM:612219
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| amyotrophic lateral sclerosis | Moderate | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| amyotrophic lateral sclerosis | Disputed | UD |
Mondo (2): amyotrophic lateral sclerosis (MONDO:0004976), Ewing sarcoma (MONDO:0012817)
Orphanet (3): Amyotrophic lateral sclerosis (Orphanet:803), OBSOLETE: Neuroepithelioma (Orphanet:2677), Skeletal Ewing sarcoma (Orphanet:319)
HPO phenotypes
20 total (21 of 20 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001541 | Ascites |
| HP:0001824 | Weight loss |
| HP:0001903 | Anemia |
| HP:0002017 | Nausea and vomiting |
| HP:0002027 | Abdominal pain |
| HP:0002240 | Hepatomegaly |
| HP:0002585 | Abnormal peritoneum morphology |
| HP:0002595 | Ileus |
| HP:0002716 | Lymphadenopathy |
| HP:0002894 | Neoplasm of the pancreas |
| HP:0003270 | Abdominal distention |
| HP:0004326 | Cachexia |
| HP:0010788 | Testicular neoplasm |
| HP:0012254 | Ewing sarcoma |
| HP:0100006 | Neoplasm of the central nervous system |
| HP:0100242 | Sarcoma |
| HP:0100526 | Neoplasm of the lung |
| HP:0100615 | Ovarian neoplasm |
| HP:0100721 | Mediastinal lymphadenopathy |
| HP:0007354 | Amyotrophic lateral sclerosis |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001937_28 | Breast cancer | 3.000000e-09 |
| GCST002553_2 | Pancreatic cancer | 1.000000e-08 |
| GCST004603_150 | Platelet count | 3.000000e-10 |
| GCST90002401_271 | Platelet distribution width | 1.000000e-15 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004309 | platelet count |
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000690 | Amyotrophic Lateral Sclerosis | C10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050 |
| D012512 | Sarcoma, Ewing | C04.557.450.565.575.650.800; C04.557.450.795.620.800 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3351202 (SINGLE PROTEIN), CHEMBL3885568 (CHIMERIC PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
7 potent at pChembl≥5 of 11 total, top 7 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.82 | IC50 | 150 | nM | CHEMBL3360409 |
| 6.75 | IC50 | 180 | nM | CHEMBL3360408 |
| 6.48 | IC50 | 330 | nM | CHEMBL3360406 |
| 6.46 | IC50 | 350 | nM | CHEMBL2011500 |
| 6.11 | IC50 | 770 | nM | CHEMBL3360384 |
| 5.32 | Kd | 4800 | nM | CHEMBL3360410 |
| 5.24 | IC50 | 5810 | nM | MOLIBRESIB |
PubChem BioAssay actives
7 with measured affinity, of 35 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4,7-dichloro-3-[2-[4-(dimethylamino)phenyl]-2-oxoethyl]-3-hydroxy-1H-indol-2-one | 1171938: Inhibition of transcriptional activity of full-length EWS-FLI1 (unknown origin) expressed in COS7 cells by NR0B1-luciferase reporter gene assay | ic50 | 0.1500 | uM |
| 4,7-dichloro-3-hydroxy-3-[2-[4-(methylamino)phenyl]-2-oxoethyl]-1H-indol-2-one | 1171938: Inhibition of transcriptional activity of full-length EWS-FLI1 (unknown origin) expressed in COS7 cells by NR0B1-luciferase reporter gene assay | ic50 | 0.1800 | uM |
| 4,7-dichloro-3-hydroxy-3-[2-(4-methylsulfanylphenyl)-2-oxoethyl]-1H-indol-2-one | 1171938: Inhibition of transcriptional activity of full-length EWS-FLI1 (unknown origin) expressed in COS7 cells by NR0B1-luciferase reporter gene assay | ic50 | 0.3300 | uM |
| 4,7-dichloro-3-hydroxy-3-[2-(4-methoxyphenyl)-2-oxoethyl]-1H-indol-2-one | 1171938: Inhibition of transcriptional activity of full-length EWS-FLI1 (unknown origin) expressed in COS7 cells by NR0B1-luciferase reporter gene assay | ic50 | 0.3500 | uM |
| 3-hydroxy-4,7-dimethoxy-3-[2-(4-methoxyphenyl)-2-oxoethyl]-1H-indol-2-one | 1171938: Inhibition of transcriptional activity of full-length EWS-FLI1 (unknown origin) expressed in COS7 cells by NR0B1-luciferase reporter gene assay | ic50 | 0.7700 | uM |
| N-[4-[2-(4,7-dichloro-3-hydroxy-2-oxo-1H-indol-3-yl)acetyl]phenyl]-N-methyl-6-[5-[(4R)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]hexanamide | 1171939: Binding affinity to purified recombinant EWS-FLI1 (unknown origin) after 1 hr by colorimetric phosphatase assay | kd | 4.8000 | uM |
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2178885: Inhibition of EWSR1 (unknown origin) incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | ic50 | 5.8100 | uM |
CTD chemical–gene interactions
69 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression, affects expression | 3 |
| Valproic Acid | affects expression, decreases expression | 3 |
| bisphenol A | decreases expression, increases expression | 2 |
| (+)-JQ1 compound | increases response to substance, affects binding, decreases reaction, decreases expression | 2 |
| Air Pollutants | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| quinomethionate | affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| geraniol | decreases expression | 1 |
| glycidyl methacrylate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases methylation, increases abundance | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| phosphatidylbutanol | affects reaction, increases abundance, increases reaction | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| romidepsin | decreases activity, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| 14-deoxy-11,12-didehydroandrographolide | decreases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Sevoflurane | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
ChEMBL screening assays
14 unique, capped per target: 14 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4155322 | Binding | Binding affinity to RNA-binding protein EWS isoform 6 in human A549 cells at 0.15 mM after 4 hrs by HPLC-MS based pull down assay relative to control | Synthesis, cytotoxic evaluation and target identification of thieno[2,3-d]pyrimidine derivatives with a dithiocarbamate side chain at C2 position. — Eur J Med Chem |
Cellosaurus cell lines
152 cell lines: 151 cancer cell line, 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0080 | A-673 | Cancer cell line | Female |
| CVCL_0530 | SK-N-MC | Cancer cell line | Female |
| CVCL_0627 | SK-ES-1 | Cancer cell line | Male |
| CVCL_0631 | SK-NEP-1 | Cancer cell line | Female |
| CVCL_0J30 | CCS292 | Cancer cell line | Sex unspecified |
| CVCL_0J31 | DTC1 | Cancer cell line | Sex unspecified |
| CVCL_0J32 | Hewga-CCS | Cancer cell line | Female |
| CVCL_0J33 | MP-CCS-SY | Cancer cell line | Female |
| CVCL_0J34 | MST-1 | Cancer cell line | Female |
| CVCL_0J35 | MST-2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00542412 | PHASE4 | COMPLETED | CARE Canadian ALS Riluzole Evaluation |
| NCT00560287 | PHASE4 | UNKNOWN | Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis |
| NCT00613899 | PHASE4 | COMPLETED | Feasibility of Telesurveillance and Home Cough Assistance for Amyotrophic Lateral Patients (ALS) |
| NCT04997954 | PHASE4 | UNKNOWN | EMERALD TRIAL Open Label Extension Study |
| NCT06849115 | PHASE4 | COMPLETED | Effects of L-Carnitine in Amyotrophic Lateral Sclerosis Patients With CHCHD10 Mutations |
| NCT07223723 | PHASE4 | RECRUITING | A Study to Learn More About the Long-Term Safety of Tofersen (Qalsody) in Chinese Participants With SOD-1 Amyotrophic Lateral Sclerosis (ALS) |
| NCT00021697 | PHASE3 | COMPLETED | Safety/Efficacy of AVP-923 in the Treatment of Emotional Lability (Uncontrolled Crying & Laughing) in Patients With ALS |
| NCT00035815 | PHASE3 | COMPLETED | Insulin-like Growth Factor-1 in Amyotrophic Lateral Sclerosis (ALS) Trial |
| NCT00047723 | PHASE3 | COMPLETED | Minocycline to Treat Amyotrophic Lateral Sclerosis |
| NCT00069186 | PHASE3 | UNKNOWN | Study of Creatine Monohydrate in Patients With Amyotrophic Lateral Sclerosis |
| NCT00136110 | PHASE3 | COMPLETED | Trial of Sodium Valproate in Amyotrophic Lateral Sclerosis |
| NCT00330681 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) |
| NCT00349622 | PHASE3 | COMPLETED | Clinical Trial Ceftriaxone in Subjects With ALS |
| NCT00372879 | PHASE3 | COMPLETED | Clinical Trial of Vitamin E to Treat Muscular Cramps in Patients With ALS |
| NCT00415519 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) Who Met Severity Classification III |
| NCT00424463 | PHASE3 | COMPLETED | Expanded Controlled Study of Safety and Efficacy of MCI-186 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00868166 | PHASE3 | COMPLETED | Safety and Efficacy of TRO19622 as add-on Therapy to Riluzole Versus Placebo in Treatment of Patients Suffering From ALS |
| NCT00965497 | PHASE3 | COMPLETED | Escitalopram (Lexapro) for Depression MS or ALS |
| NCT01016522 | PHASE3 | TERMINATED | Safety and Tolerability of the Ketogenic Diet in Amyotrophic Lateral Sclerosis (ALS) |
| NCT01160263 | PHASE3 | COMPLETED | Study of Dopamine and Serotonin Transporters in Patients With Amyotrophic Lateral Sclerosis and Controls |
| NCT01281189 | PHASE3 | COMPLETED | Phase 3 Study of Dexpramipexole in ALS |
| NCT01492686 | PHASE3 | COMPLETED | Phase 3 Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis |
| NCT01583088 | PHASE3 | TERMINATED | Early Stage Amyotrophic Lateral Sclerosis Phrenic Stimulation |
| NCT01622088 | PHASE3 | TERMINATED | Phase 3 Extension Study of Dexpramipexole in ALS |
| NCT02496767 | PHASE3 | COMPLETED | Ventilatory Investigation of Tirasemtiv and Assessment of Longitudinal Indices After Treatment for a Year |
| NCT02623699 | PHASE3 | COMPLETED | An Efficacy, Safety, Tolerability, Pharmacokinetics and Pharmacodynamics Study of BIIB067 (Tofersen) in Adults With Inherited Amyotrophic Lateral Sclerosis (ALS) |
| NCT02936635 | PHASE3 | COMPLETED | A Study for Patients Who Completed VITALITY-ALS (CY 4031) |
| NCT03127267 | PHASE3 | RECRUITING | Efficacy and Safety of Masitinib Versus Placebo in the Treatment of ALS Patients |
| NCT03280056 | PHASE3 | COMPLETED | Safety and Efficacy of Repeated Administrations of NurOwn® in ALS Patients |
| NCT03491462 | PHASE3 | COMPLETED | Arimoclomol in Amyotropic Lateral Sclerosis |
| NCT03505021 | PHASE3 | COMPLETED | Effects of Oral Levosimendan (ODM-109) on Respiratory Function in Patients With ALS |
| NCT03548311 | PHASE3 | COMPLETED | Clinical Trial of Ultra-high Dose Methylcobalamin for ALS |
| NCT03690791 | PHASE3 | UNKNOWN | Efficacy of Cannabinoids in Amyotrophic Lateral Sclerosis or Motor Neurone Disease |
| NCT03800524 | PHASE3 | UNKNOWN | Safety and Efficacy of TUDCA as add-on Treatment in Patients Affected by ALS |
| NCT03836716 | PHASE3 | TERMINATED | Arimoclomol in Amyotropic Lateral Sclerosis - Open Label Extension Trial |
| NCT03948178 | PHASE3 | TERMINATED | Effects of Oral Levosimendan on Respiratory Function in Patients With Amyotrophic Lateral Sclerosis (ALS): Open-Label Extension |
| NCT04165824 | PHASE3 | COMPLETED | Safety Study of Oral Edaravone Administered in Subjects With ALS |
| NCT04248465 | PHASE3 | TERMINATED | An Efficacy and Safety Study of Ravulizumab in ALS Participants |
| NCT04569084 | PHASE3 | TERMINATED | Efficacy and Safety Study of Oral Edaravone Administered in Subjects With ALS |
Related Atlas pages
- Associated diseases: amyotrophic lateral sclerosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyotrophic lateral sclerosis, Ewing sarcoma