EXOC3L2
geneOn this page
Also known as FLJ36147XTP7
Summary
EXOC3L2 (exocyst complex component 3 like 2, HGNC:30162) is a protein-coding gene on chromosome 19q13.32, encoding Exocyst complex component 3-like protein 2 (Q2M3D2).
The protein encoded by this gene is upregulated by vascular endothelial growth factor A and interacts with exocyst complex component 4. The encoded protein may be part of an exocyst complex that plays a role in cell membrane dynamics. Mutations in this gene may be associated with Alzheimer’s disease.
Source: NCBI Gene 90332 — RefSeq curated summary.
At a glance
- Gene–disease (curated): brain malformation renal syndrome (Strong, GenCC)
- GWAS associations: 25
- Clinical variants (ClinVar): 105 total — 5 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 28
- MANE Select transcript:
NM_001382422
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30162 |
| Approved symbol | EXOC3L2 |
| Name | exocyst complex component 3 like 2 |
| Location | 19q13.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ36147, XTP7 |
| Ensembl gene | ENSG00000283632 |
| Ensembl biotype | protein_coding |
| OMIM | 616927 |
| Entrez | 90332 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000413988, ENST00000857198, ENST00000952151
RefSeq mRNA: 1 — MANE Select: NM_001382422
NM_001382422
CCDS: CCDS92642
Canonical transcript exons
ENST00000413988 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001112593 | 45231763 | 45231874 |
| ENSE00001158867 | 45212370 | 45213357 |
| ENSE00002774868 | 45238523 | 45239061 |
| ENSE00002808887 | 45245341 | 45245407 |
| ENSE00003799279 | 45234193 | 45234826 |
| ENSE00003802157 | 45224778 | 45224913 |
| ENSE00003803748 | 45217528 | 45217683 |
| ENSE00003805802 | 45227662 | 45227772 |
| ENSE00003807174 | 45216073 | 45216194 |
| ENSE00003807367 | 45218197 | 45218319 |
| ENSE00003809320 | 45227974 | 45228074 |
| ENSE00003810760 | 45228165 | 45228266 |
Expression profiles
Bgee: expression breadth ubiquitous, 195 present calls, max score 96.31.
FANTOM5 (CAGE): breadth broad, TPM avg 1.2963 / max 63.2392, expressed in 277 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 181446 | 1.2963 | 277 |
Top tissues by expression
217 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 96.31 | gold quality |
| secondary oocyte | CL:0000655 | 91.91 | gold quality |
| buccal mucosa cell | CL:0002336 | 90.46 | gold quality |
| cardia of stomach | UBERON:0001162 | 88.12 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 87.63 | silver quality |
| renal medulla | UBERON:0000362 | 87.08 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 86.70 | silver quality |
| vena cava | UBERON:0004087 | 86.62 | silver quality |
| subthalamic nucleus | UBERON:0001906 | 86.55 | silver quality |
| pylorus | UBERON:0001166 | 86.10 | silver quality |
| substantia nigra pars compacta | UBERON:0001965 | 85.81 | silver quality |
| lateral globus pallidus | UBERON:0002476 | 85.77 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 85.73 | silver quality |
| ventral tegmental area | UBERON:0002691 | 85.66 | silver quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 85.60 | silver quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 85.20 | silver quality |
| metanephros cortex | UBERON:0010533 | 85.13 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 84.78 | gold quality |
| pericardium | UBERON:0002407 | 84.78 | gold quality |
| metanephros | UBERON:0000081 | 84.43 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 84.08 | silver quality |
| medulla oblongata | UBERON:0001896 | 83.77 | silver quality |
| superior vestibular nucleus | UBERON:0007227 | 83.24 | silver quality |
| pons | UBERON:0000988 | 82.79 | silver quality |
| adult mammalian kidney | UBERON:0000082 | 82.71 | gold quality |
| tongue | UBERON:0001723 | 82.64 | silver quality |
| superior surface of tongue | UBERON:0007371 | 82.62 | silver quality |
| body of tongue | UBERON:0011876 | 82.50 | silver quality |
| trachea | UBERON:0003126 | 82.11 | silver quality |
| left lobe of thyroid gland | UBERON:0001120 | 82.10 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-135922 | yes | 533.46 |
| E-ANND-3 | yes | 3.11 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
41 targeting EXOC3L2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-6832-5P | 99.58 | 64.82 | 1132 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-3182 | 99.40 | 68.15 | 2454 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-4763-3P | 99.10 | 67.83 | 2649 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-922 | 99.02 | 67.23 | 1838 |
| HSA-MIR-4270 | 99.02 | 66.26 | 1987 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-214-3P | 98.71 | 68.12 | 2128 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-6840-3P | 98.68 | 65.95 | 1923 |
Literature-anchored findings (GeneRIF, showing 5)
- exoc3l2 silencing inhibits VEGF receptor 2 phosphorylation and VEGFA-directed migration of cultured endothelial cells. (PMID:21566143)
- This study suggests that the rs597668 polymorphism near EXOC3L2 may not play a major role in the susceptibility to late-onset Alzheimer’s disease in the Northern Han Chinese population. (PMID:22381399)
- This meta-analysis assesses an association between rs597668 polymorphism in EXOC3L2 and Alzheimer’s disease. (PMID:23663385)
- EXOC3L2 rs597668 variant is associated with Alzheimer’s disease susceptibility. (PMID:28423615)
- We propose that biallelic EXOC3L2 mutations lead to a novel syndrome that affects hindbrain development, kidney and possibly the bone marrow. (PMID:30327448)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | exoc3l2a | ENSDARG00000008414 |
| danio_rerio | exoc3l2b | ENSDARG00000030782 |
| mus_musculus | Exoc3l2 | ENSMUSG00000011263 |
| rattus_norvegicus | Exoc3l2 | ENSRNOG00000017448 |
Paralogs (4): EXOC3L1 (ENSG00000179044), EXOC3 (ENSG00000180104), TNFAIP2 (ENSG00000185215), EXOC3L4 (ENSG00000205436)
Protein
Protein identifiers
Exocyst complex component 3-like protein 2 — Q2M3D2 (reviewed: Q2M3D2)
Alternative names: HBV X-transactivated gene 7 protein, HBV XAg-transactivated protein 7
All UniProt accessions (1): Q2M3D2
UniProt curated annotations — full annotation on UniProt →
Disease relevance. Brain malformation renal syndrome (BMRS) [MIM:620943] An autosomal recessive syndrome characterized by brain abnormalities, Dandy-Walker malformation, and renal dysplasia. Dandy-Walker malformation features agenesis/hypoplasia of the cerebellar vermis, cystic dilatation of the fourth ventricle and enlargement of posterior fossa. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the SEC6 family.
RefSeq proteins (1): NP_001369351* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR010326 | EXOC3/Sec6 | Family |
| IPR042532 | EXOC3/Sec6_C | Homologous_superfamily |
Pfam: PF06046
UniProt features (9 total): region of interest 3, sequence variant 3, chain 1, coiled-coil region 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q2M3D2-F1 | 74.26 | 0.40 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 134 (showing top):
BENPORATH_ES_WITH_H3K27ME3, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, ROVERSI_GLIOMA_COPY_NUMBER_UP, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_EXOCYTOSIS, GOBP_SECRETION, CUI_TCF21_TARGETS_2_DN, GOCC_EXOCYST, MIKKELSEN_MEF_HCP_WITH_H3K27ME3, LEE_BMP2_TARGETS_DN, GOCC_VESICLE_TETHERING_COMPLEX, ZNF282_TARGET_GENES, MIR15A_5P, MIR195_5P, MIR15B_5P
GO Biological Process (1): exocytosis (GO:0006887)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (1): exocyst (GO:0000145)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| vesicle-mediated transport | 1 |
| secretion by cell | 1 |
| vesicle fusion to plasma membrane | 1 |
| binding | 1 |
| cell cortex | 1 |
| vesicle tethering complex | 1 |
Protein interactions and networks
STRING
692 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EXOC3L2 | PDE7B | Q9NP56 | 678 |
| EXOC3L2 | PICALM | Q13492 | 661 |
| EXOC3L2 | EXOC4 | Q96A65 | 647 |
| EXOC3L2 | MARK4 | Q96L34 | 609 |
| EXOC3L2 | BLOC1S3 | Q6QNY0 | 598 |
| EXOC3L2 | BIN1 | O00499 | 597 |
| EXOC3L2 | CLU | P10909 | 544 |
| EXOC3L2 | MS4A6E | Q96DS6 | 517 |
| EXOC3L2 | TNK1 | Q13470 | 507 |
| EXOC3L2 | ABCA7 | Q8IZY2 | 506 |
| EXOC3L2 | SEPTIN9 | Q9UHD8 | 506 |
| EXOC3L2 | CD2AP | Q9Y5K6 | 471 |
| EXOC3L2 | APOE | P02649 | 448 |
| EXOC3L2 | SORL1 | Q92673 | 447 |
| EXOC3L2 | TOMM40 | O96008 | 445 |
IntAct
23 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EXOC3L2 | TNFSF18 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MRPL12 | EXOC3L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BIK | EXOC3L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EXOC3L2 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| EXOC3L2 | GPR148 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EXOC3L2 | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| EXOC3L2 | SIAH1 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDH20 | CAPN5 | psi-mi:“MI:0914”(association) | 0.350 |
| TUBB | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| UBR2 | NIPSNAP2 | psi-mi:“MI:0914”(association) | 0.350 |
| MDC1 | SMCHD1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| EXOC3L2 | MRPL12 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EXOC3L2 | BIK | psi-mi:“MI:0915”(physical association) | 0.000 |
| EXOC3L2 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| EXOC3L2 | GPR148 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (16): SIAH1 (Affinity Capture-MS), MIPEP (Affinity Capture-MS), HSPA8 (Affinity Capture-MS), EXOC4 (Affinity Capture-Western), EXOC3L2 (Proximity Label-MS), EXOC3L2 (Two-hybrid), EXOC3L2 (Two-hybrid), EXOC3L2 (Two-hybrid), EXOC3L2 (Two-hybrid), EXOC3L2 (Two-hybrid), EXOC3L2 (Two-hybrid), EXOC3L2 (Positive Genetic), MIPEP (Affinity Capture-MS), SIAH1 (Affinity Capture-MS), EXOC3L2 (Negative Genetic)
ESM2 similar proteins: A0A8I5KY20, A2A9T0, A2IDD5, B0BNK9, B8ZZ34, C9JI98, C9JLR9, F5GYI3, O18734, P0CG25, P84157, Q0IIA6, Q0PHV7, Q0X0E2, Q13387, Q1RMK9, Q2M3D2, Q2TAM9, Q3ZCQ3, Q4VA45, Q673H1, Q69YZ2, Q6NS60, Q6P6N5, Q6PJ61, Q7Z6J2, Q80ZJ8, Q810I0, Q86SX3, Q86UD0, Q86XT2, Q8BNN1, Q8IUW3, Q8N4Y2, Q8N6N2, Q8QZV0, Q8R4T5, Q8TF61, Q8VCR9, Q8WXF8
Diamond homologs: A2AV37, O60645, Q0V8C2, Q0VCR8, Q2M3D2, Q62825, Q6KAR6, Q86VI1, Q8BI71, Q17RC7, Q6DIA2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
105 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 1 |
| Uncertain significance | 62 |
| Likely benign | 21 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1027393 | NC_000019.9:g.(45728172_45730919)_(45731525_45735020)del | Pathogenic |
| 1252026 | NM_001382422.1(EXOC3L2):c.1301T>A (p.Leu434Gln) | Pathogenic |
| 3340131 | EXOC3L2, LEU41GLN | Pathogenic |
| 3340132 | EXOC3L2, ARG72TER | Pathogenic |
| 3340134 | EXOC3L2, EX3-5DEL (SCV001519072) | Pathogenic |
| 3235909 | NM_001382422.1(EXOC3L2):c.1972dup (p.Gln658fs) | Likely pathogenic |
SpliceAI
891 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:45213354:CTGC:C | acceptor_gain | 1.0000 |
| 19:45213355:TGC:T | acceptor_gain | 1.0000 |
| 19:45213356:GC:G | acceptor_gain | 1.0000 |
| 19:45213357:CC:C | acceptor_gain | 1.0000 |
| 19:45213357:CCTG:C | acceptor_loss | 1.0000 |
| 19:45213358:C:CC | acceptor_gain | 1.0000 |
| 19:45216068:CTCAC:C | donor_loss | 1.0000 |
| 19:45216069:TCACC:T | donor_loss | 1.0000 |
| 19:45216070:CACCT:C | donor_loss | 1.0000 |
| 19:45216071:A:AG | donor_loss | 1.0000 |
| 19:45216072:C:G | donor_loss | 1.0000 |
| 19:45216190:GACTC:G | acceptor_gain | 1.0000 |
| 19:45216191:ACTC:A | acceptor_gain | 1.0000 |
| 19:45216191:ACTCC:A | acceptor_gain | 1.0000 |
| 19:45216192:CTC:C | acceptor_gain | 1.0000 |
| 19:45216192:CTCC:C | acceptor_gain | 1.0000 |
| 19:45216192:CTCCT:C | acceptor_gain | 1.0000 |
| 19:45216193:TC:T | acceptor_gain | 1.0000 |
| 19:45216193:TCCT:T | acceptor_gain | 1.0000 |
| 19:45216194:CC:C | acceptor_gain | 1.0000 |
| 19:45216195:C:A | acceptor_loss | 1.0000 |
| 19:45216195:C:CC | acceptor_gain | 1.0000 |
| 19:45216198:C:CT | acceptor_gain | 1.0000 |
| 19:45217523:CTGA:C | donor_loss | 1.0000 |
| 19:45217524:TGA:T | donor_loss | 1.0000 |
| 19:45217525:GAC:G | donor_loss | 1.0000 |
| 19:45217526:A:AC | donor_gain | 1.0000 |
| 19:45217527:C:CC | donor_gain | 1.0000 |
| 19:45217527:CCAG:C | donor_gain | 1.0000 |
| 19:45217679:AGCGC:A | acceptor_gain | 1.0000 |
AlphaMissense
5011 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:45218289:A:G | W191R | 0.998 |
| 19:45218289:A:T | W191R | 0.998 |
| 19:45218287:C:A | W191C | 0.997 |
| 19:45218287:C:G | W191C | 0.997 |
| 19:45217537:G:C | F270L | 0.995 |
| 19:45217537:G:T | F270L | 0.995 |
| 19:45217539:A:G | F270L | 0.995 |
| 19:45217539:A:T | F270I | 0.994 |
| 19:45217665:G:C | H228D | 0.994 |
| 19:45213334:A:T | L322H | 0.992 |
| 19:45216097:A:G | L306S | 0.992 |
| 19:45217538:A:G | F270S | 0.992 |
| 19:45227983:A:G | F95S | 0.992 |
| 19:45216154:A:G | L287S | 0.991 |
| 19:45213220:A:G | F360S | 0.990 |
| 19:45227982:G:C | F95L | 0.990 |
| 19:45227982:G:T | F95L | 0.990 |
| 19:45227984:A:G | F95L | 0.990 |
| 19:45213219:A:C | F360L | 0.989 |
| 19:45213219:A:T | F360L | 0.989 |
| 19:45213221:A:G | F360L | 0.989 |
| 19:45213220:A:C | F360C | 0.988 |
| 19:45216118:A:T | I299N | 0.988 |
| 19:45216120:G:C | S298R | 0.988 |
| 19:45216120:G:T | S298R | 0.988 |
| 19:45216122:T:G | S298R | 0.988 |
| 19:45217550:A:G | L266P | 0.988 |
| 19:45217571:A:G | L259P | 0.988 |
| 19:45217539:A:C | F270V | 0.987 |
| 19:45217667:A:G | L227P | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000026004 (19:45216897 C>T), RS1000424724 (19:45225835 C>T), RS1000433164 (19:45246646 A>G,T), RS1000471139 (19:45214653 C>T), RS1000511579 (19:45231173 C>T), RS1000598048 (19:45244739 C>T), RS1000826049 (19:45238701 G>A), RS1000875981 (19:45242367 C>T), RS1000880315 (19:45226101 G>T), RS1000949929 (19:45238520 C>T), RS1000991360 (19:45242721 G>A), RS1001078940 (19:45215897 C>T), RS1001124255 (19:45237017 A>T), RS1001185061 (19:45228598 C>G), RS1001344003 (19:45234516 A>G,T)
Disease associations
OMIM: gene MIM:616927 | disease phenotypes: MIM:249000, MIM:620943
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| brain malformation renal syndrome | Strong | Autosomal recessive |
Mondo (2): Meckel syndrome (MONDO:0018921), brain malformation renal syndrome (MONDO:0975799)
Orphanet (1): Meckel syndrome (Orphanet:564)
HPO phenotypes
28 total (28 of 28 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000092 | Renal tubular atrophy |
| HP:0000659 | Peters anomaly |
| HP:0000793 | Membranoproliferative glomerulonephritis |
| HP:0001305 | Dandy-Walker malformation |
| HP:0001320 | Cerebellar vermis hypoplasia |
| HP:0001562 | Oligohydramnios |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001876 | Pancytopenia |
| HP:0001903 | Anemia |
| HP:0002089 | Pulmonary hypoplasia |
| HP:0002198 | Dilated fourth ventricle |
| HP:0003577 | Congenital onset |
| HP:0003774 | Stage 5 chronic kidney disease |
| HP:0004719 | Hyperechogenic kidneys |
| HP:0005445 | Enlarged posterior fossa |
| HP:0005528 | Bone marrow hypocellularity |
| HP:0007063 | Aplasia of the inferior half of the cerebellar vermis |
| HP:0011344 | Severe global developmental delay |
| HP:0025700 | Anhydramnios |
| HP:0030674 | Antenatal onset |
| HP:0031412 | Abnormal telomere morphology |
| HP:0034198 | Second trimester onset |
| HP:0040012 | Chromosome breakage |
| HP:0100307 | Cerebellar hemisphere hypoplasia |
| HP:0100333 | Unilateral cleft lip |
| HP:0100334 | Unilateral cleft palate |
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000337_21 | Quantitative traits | 2.000000e-06 |
| GCST000337_22 | Quantitative traits | 4.000000e-07 |
| GCST001337_36 | Platelet count | 4.000000e-10 |
| GCST002422_1 | Alzheimer’s disease | 9.000000e-116 |
| GCST003219_43 | Advanced age-related macular degeneration | 3.000000e-07 |
| GCST004599_154 | Mean platelet volume | 6.000000e-78 |
| GCST005194_29 | Coronary artery disease | 1.000000e-10 |
| GCST005557_4 | Serum uric acid levels | 3.000000e-07 |
| GCST005950_15 | Body mass index x sex x age interaction (4df test) | 2.000000e-10 |
| GCST005951_56 | Body mass index | 1.000000e-06 |
| GCST005952_8 | Body mass index (age>50) | 9.000000e-12 |
| GCST005954_4 | Body mass index x age interaction | 2.000000e-07 |
| GCST006701_3 | Parental longevity (father’s attained age) | 9.000000e-09 |
| GCST006979_682 | Heel bone mineral density | 2.000000e-10 |
| GCST007320_22 | Alzheimer’s disease or family history of Alzheimer’s disease | 2.000000e-22 |
| GCST007320_41 | Alzheimer’s disease or family history of Alzheimer’s disease | 5.000000e-13 |
| GCST007320_46 | Alzheimer’s disease or family history of Alzheimer’s disease | 4.000000e-12 |
| GCST007827_3 | Alzheimer’s disease or HDL levels (pleiotropy) | 1.000000e-97 |
| GCST007827_8 | Alzheimer’s disease or HDL levels (pleiotropy) | 3.000000e-36 |
| GCST90002384_455 | Hemoglobin | 1.000000e-13 |
| GCST90002395_417 | Mean platelet volume | 2.000000e-166 |
| GCST90002401_295 | Platelet distribution width | 9.000000e-80 |
| GCST90002402_566 | Platelet count | 2.000000e-52 |
| GCST90002403_302 | Red blood cell count | 1.000000e-13 |
| GCST90002407_629 | White blood cell count | 5.000000e-09 |
EFO canonical traits (15, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004458 | C-reactive protein measurement |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004309 | platelet count |
| EFO:1001492 | atrophic macular degeneration |
| EFO:0004761 | uric acid measurement |
| EFO:0004340 | body mass index |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0007796 | parental longevity |
| EFO:0009270 | heel bone mineral density |
| EFO:0009268 | family history of Alzheimer’s disease |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0007984 | platelet component distribution width |
| EFO:0004305 | erythrocyte count |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation | 2 |
| sodium arsenite | increases expression | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| maleic acid | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression, affects response to substance, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| licochalcone B | increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Fulvestrant | increases methylation | 1 |
| Arsenic | affects methylation | 1 |
| Camptothecin | increases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| Plant Extracts | decreases expression, affects cotreatment | 1 |
| Triclosan | decreases expression | 1 |
| Valproic Acid | increases expression, affects cotreatment | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01401998 | Not specified | RECRUITING | ARPKD Database Study |
Related Atlas pages
- Associated diseases: brain malformation renal syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): brain malformation renal syndrome, Meckel syndrome, wet macular degeneration