EXOG
gene geneOn this page
Also known as ENGL-aENGLENGL-b
Summary
EXOG (exo/endonuclease G, HGNC:3347) is a protein-coding gene on chromosome 3p22.2, encoding Nuclease EXOG, mitochondrial (Q9Y2C4). Endo/exonuclease with nicking activity towards supercoiled DNA, a preference for single-stranded DNA and 5’-3’ exonuclease activity.
This gene encodes an endo/exonuclease with 5’-3’ exonuclease activity. The encoded enzyme catalyzes the hydrolysis of ester linkages at the 5’ end of a nucleic acid chain. This enzyme is localized to the mitochondria and may play a role in programmed cell death. Alternatively spliced transcript variants have been described. A pseudogene exists on chromosome 18.
Source: NCBI Gene 9941 — RefSeq curated summary.
At a glance
- GWAS associations: 21
- Clinical variants (ClinVar): 71 total
- MANE Select transcript:
NM_005107
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3347 |
| Approved symbol | EXOG |
| Name | exo/endonuclease G |
| Location | 3p22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ENGL-a, ENGL, ENGL-b |
| Ensembl gene | ENSG00000157036 |
| Ensembl biotype | protein_coding |
| OMIM | 604051 |
| Entrez | 9941 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 10 nonsense_mediated_decay, 8 protein_coding, 3 retained_intron
ENST00000287675, ENST00000412107, ENST00000422077, ENST00000431472, ENST00000436414, ENST00000438992, ENST00000443942, ENST00000447573, ENST00000450732, ENST00000453767, ENST00000454803, ENST00000457367, ENST00000470291, ENST00000474071, ENST00000483749, ENST00000489813, ENST00000630638, ENST00000899406, ENST00000940163, ENST00000940164, ENST00000949412
RefSeq mRNA: 2 — MANE Select: NM_005107
NM_001145464, NM_005107
CCDS: CCDS2680, CCDS46795
Canonical transcript exons
ENST00000287675 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001330730 | 38523901 | 38526303 |
| ENSE00001603412 | 38496340 | 38496530 |
| ENSE00003463622 | 38503615 | 38503691 |
| ENSE00003464591 | 38506854 | 38506968 |
| ENSE00003496039 | 38497629 | 38497778 |
| ENSE00003613449 | 38501355 | 38501494 |
Expression profiles
Bgee: expression breadth ubiquitous, 246 present calls, max score 96.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.7207 / max 70.5744, expressed in 1758 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 36108 | 8.1386 | 1724 |
| 36109 | 1.5821 | 954 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 96.91 | silver quality |
| apex of heart | UBERON:0002098 | 93.06 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 91.61 | gold quality |
| heart left ventricle | UBERON:0002084 | 89.27 | gold quality |
| cardiac ventricle | UBERON:0002082 | 88.73 | gold quality |
| right atrium auricular region | UBERON:0006631 | 87.34 | gold quality |
| heart | UBERON:0000948 | 86.77 | gold quality |
| cardiac atrium | UBERON:0002081 | 86.49 | gold quality |
| colonic epithelium | UBERON:0000397 | 83.90 | gold quality |
| stromal cell of endometrium | CL:0002255 | 83.53 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 82.48 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.36 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.01 | gold quality |
| rectum | UBERON:0001052 | 81.93 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 81.88 | gold quality |
| cortical plate | UBERON:0005343 | 81.86 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 81.85 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 81.83 | gold quality |
| tendon | UBERON:0000043 | 81.79 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 81.69 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 81.41 | gold quality |
| ganglionic eminence | UBERON:0004023 | 81.40 | gold quality |
| body of uterus | UBERON:0009853 | 81.37 | gold quality |
| mucosa of stomach | UBERON:0001199 | 81.33 | gold quality |
| lower esophagus | UBERON:0013473 | 81.33 | gold quality |
| sural nerve | UBERON:0015488 | 81.30 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.22 | gold quality |
| metanephros cortex | UBERON:0010533 | 81.16 | gold quality |
| left adrenal gland | UBERON:0001234 | 81.05 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 80.98 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
72 targeting EXOG, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-6744-5P | 99.93 | 66.82 | 748 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-8062 | 99.88 | 68.43 | 995 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-425-5P | 99.59 | 67.67 | 900 |
| HSA-MIR-451B | 99.55 | 68.28 | 1380 |
| HSA-MIR-888-3P | 99.53 | 69.77 | 1057 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-578 | 99.46 | 68.36 | 1787 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
Literature-anchored findings (GeneRIF, showing 8)
- ENDOGL1 is a candidate disease-susceptibility gene for type 2 diabetes in a Japanese population (PMID:17415550)
- Human endonuclease G-like-1 is a dimeric mitochondrial enzyme that displays 5’-3’ exonuclease activity and further differs from EndoG in substrate specificity (PMID:18187503)
- EXOG depletion induces persistent SSBs in the mtDNA, enhances ROS levels, and causes apoptosis in normal cells but not in mt genome-deficient rho0 cells. (PMID:21768646)
- These data indicate that HSV-1 UL12.5 deploys cellular proteins, including ENDOG and EXOG, to destroy mtDNA and contribute to a growing body of literature highlighting roles for ENDOG and EXOG in mtDNA maintenance. (PMID:23986585)
- Data suggest a role of exo/endonuclease G nuclease (hEXOG) in pathway for mitochondrial DNA repair. (PMID:28466855)
- ExoG has a role as a unique 5’-exonuclease to mediate the flap-independent RNA primer removal process during mtDNA replication to maintain mitochondrial genome integrity (PMID:30949702)
- In vitro reconstitution reveals a key role of human mitochondrial EXOG in RNA primer processing. (PMID:35819194)
- Human EXOG Possesses Strong AP Hydrolysis Activity: Implication on Mitochondrial DNA Base Excision Repair. (PMID:36516439)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Exog | ENSMUSG00000042787 |
| rattus_norvegicus | Exog | ENSRNOG00000014801 |
| drosophila_melanogaster | CG12917 | FBGN0033490 |
| drosophila_melanogaster | CG14120 | FBGN0036321 |
| drosophila_melanogaster | CG14118 | FBGN0036323 |
| drosophila_melanogaster | CG6839 | FBGN0036831 |
| drosophila_melanogaster | CG3819 | FBGN0036833 |
| drosophila_melanogaster | CG14062 | FBGN0039592 |
| drosophila_melanogaster | Sid | FBGN0039593 |
| drosophila_melanogaster | CG33346 | FBGN0053346 |
Paralogs (1): ENDOG (ENSG00000167136)
Protein
Protein identifiers
Nuclease EXOG, mitochondrial — Q9Y2C4 (reviewed: Q9Y2C4)
Alternative names: Endonuclease G-like 1
All UniProt accessions (9): Q9Y2C4, F2Z2D3, F8WC11, F8WE28, F8WE38, F8WEP0, H0Y8P1, H7C0W6, H7C451
UniProt curated annotations — full annotation on UniProt →
Function. Endo/exonuclease with nicking activity towards supercoiled DNA, a preference for single-stranded DNA and 5’-3’ exonuclease activity.
Subunit / interactions. Homodimer.
Subcellular location. Mitochondrion inner membrane.
Tissue specificity. Ubiquitous.
Miscellaneous. The active site contains 1 hydrated divalent metal cation that has only 1 direct interaction with the protein; all other interactions are via water molecules. Probably inactive since it lacks the active site. Probably inactive since it lacks the active site.
Similarity. Belongs to the DNA/RNA non-specific endonuclease family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y2C4-1 | 1, ENGL-a | yes |
| Q9Y2C4-2 | 2, ENDOGL2, ENGL-b | |
| Q9Y2C4-3 | 3 | |
| Q9Y2C4-4 | 4 |
RefSeq proteins (2): NP_001138936, NP_005098* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001604 | Endo_G_ENPP1-like_dom | Domain |
| IPR020821 | ENPP1-3/EXOG-like_nuc-like | Domain |
| IPR040255 | Non-specific_endonuclease | Family |
| IPR041003 | Exog_C | Domain |
| IPR044925 | His-Me_finger_sf | Homologous_superfamily |
| IPR044929 | DNA/RNA_non-sp_Endonuclease_sf | Homologous_superfamily |
Pfam: PF01223, PF18026
UniProt features (48 total): strand 16, helix 15, turn 5, splice variant 4, mutagenesis site 2, transit peptide 1, chain 1, sequence conflict 1, active site 1, binding site 1, sequence variant 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9FXN | X-RAY DIFFRACTION | 1.62 |
| 5T40 | X-RAY DIFFRACTION | 1.81 |
| 5T5C | X-RAY DIFFRACTION | 1.85 |
| 7R6V | X-RAY DIFFRACTION | 2.16 |
| 5ZKI | X-RAY DIFFRACTION | 2.32 |
| 5T4I | X-RAY DIFFRACTION | 2.39 |
| 5T3V | X-RAY DIFFRACTION | 2.6 |
| 5ZKJ | X-RAY DIFFRACTION | 2.8 |
| 4A1N | X-RAY DIFFRACTION | 2.8 |
| 7R6T | X-RAY DIFFRACTION | 2.9 |
| 6IID | X-RAY DIFFRACTION | 2.99 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y2C4-F1 | 89.04 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 140 (proton acceptor)
Ligand- & substrate-binding residues (1): 171
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 140 | abolishes catalytic activity. |
| 137 | no effect on catalytic activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9913635 | Strand-asynchronous mitochondrial DNA replication |
MSigDB gene sets: 105 (showing top):
REACTOME_DNA_REPLICATION, SHEPARD_BMYB_MORPHOLINO_UP, GOMF_ENDONUCLEASE_ACTIVITY, GOMF_RNA_NUCLEASE_ACTIVITY, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GOMF_NUCLEASE_ACTIVITY, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_DNA_CATABOLIC_PROCESS, PUJANA_CHEK2_PCC_NETWORK, GOMF_RNA_ENDONUCLEASE_ACTIVITY, GOCC_MITOCHONDRIAL_ENVELOPE, chr3p22, GOMF_EXONUCLEASE_ACTIVITY, GOBP_APOPTOTIC_DNA_FRAGMENTATION, GOBP_EXECUTION_PHASE_OF_APOPTOSIS
GO Biological Process (1): apoptotic DNA fragmentation (GO:0006309)
GO Molecular Function (9): single-stranded DNA endonuclease activity (GO:0000014), nucleic acid binding (GO:0003676), endonuclease activity (GO:0004519), RNA endonuclease activity (GO:0004521), 5’-3’ exonuclease activity (GO:0008409), metal ion binding (GO:0046872), nuclease activity (GO:0004518), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (6): nucleus (GO:0005634), mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial matrix (GO:0005759), protein-containing complex (GO:0032991), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| DNA Replication | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| DNA catabolic process | 1 |
| apoptotic nuclear changes | 1 |
| DNA endonuclease activity | 1 |
| hydrolase activity, acting on ester bonds | 1 |
| nuclease activity | 1 |
| endonuclease activity | 1 |
| RNA nuclease activity | 1 |
| exonuclease activity | 1 |
| cation binding | 1 |
| catalytic activity, acting on a nucleic acid | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
| cellular_component | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
632 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EXOG | FEN1 | P39748 | 708 |
| EXOG | POLG | P54098 | 675 |
| EXOG | MGME1 | Q9BQP7 | 651 |
| EXOG | DNA2 | P51530 | 648 |
| EXOG | LIG3 | P49916 | 581 |
| EXOG | APEX1 | P27695 | 552 |
| EXOG | UNG | P13051 | 537 |
| EXOG | ACVR2B | Q13705 | 495 |
| EXOG | TDP1 | Q9NUW8 | 463 |
| EXOG | CEBPZOS | A8MTT3 | 461 |
| EXOG | ATP1A4 | Q13733 | 427 |
| EXOG | SERAC1 | Q96JX3 | 418 |
| EXOG | TFAM | Q00059 | 413 |
| EXOG | OGG1 | P78554 | 410 |
| EXOG | SSBP1 | Q04837 | 388 |
IntAct
77 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LAMTOR1 | LAMTOR5 | psi-mi:“MI:0914”(association) | 0.870 |
| EIF2B1 | EIF2B2 | psi-mi:“MI:0914”(association) | 0.860 |
| RIN1 | NRAS | psi-mi:“MI:0914”(association) | 0.840 |
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| RANBP6 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.640 |
| EIF2B2 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.640 |
| VSIG1 | TTI1 | psi-mi:“MI:0914”(association) | 0.640 |
| CHCHD4 | SSNA1 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | ENDOD1 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | MUL1 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| PEX19 | FAM20B | psi-mi:“MI:0914”(association) | 0.530 |
| RIPPLY2 | TLE2 | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| PBXIP1 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| VSIG1 | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| HEATR3 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| PBXIP1 | KCNN4 | psi-mi:“MI:0914”(association) | 0.530 |
| PEX19 | MYO1D | psi-mi:“MI:0914”(association) | 0.530 |
| NHLH2 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| EXOG | H3-4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EXOG | ZER1 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (73): EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS), EXOG (Affinity Capture-MS)
ESM2 similar proteins: D3ZU57, O08600, O09127, O15197, O19179, O43323, O88941, P08466, P0C0K6, P21709, P23377, P26640, P28339, P28340, P29322, P38447, P51840, P52785, P54760, P54761, P55203, P81203, P81204, Q00653, Q02846, Q08DH8, Q0IH72, Q10480, Q13724, Q14249, Q1HG60, Q2KIF8, Q3U6U5, Q502K1, Q60HD0, Q61488, Q69ZQ1, Q6NSJ0, Q6P1J0, Q80SX8
Diamond homologs: O08600, P08466, P38446, P38447, P81203, P81204, Q0IH72, Q10480, Q14249, Q502K1, Q8C163, Q95NM6, Q9Y2C4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
71 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 57 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1506 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:38501475:GAAA:G | donor_gain | 1.0000 |
| 3:38501476:A:T | donor_gain | 1.0000 |
| 3:38501493:GT:G | donor_gain | 1.0000 |
| 3:38503613:A:AG | acceptor_gain | 1.0000 |
| 3:38503614:G:GG | acceptor_gain | 1.0000 |
| 3:38503614:GAAA:G | acceptor_gain | 1.0000 |
| 3:38505372:G:GT | donor_gain | 1.0000 |
| 3:38506849:TTCA:T | acceptor_loss | 1.0000 |
| 3:38506851:CA:C | acceptor_loss | 1.0000 |
| 3:38506852:A:AG | acceptor_gain | 1.0000 |
| 3:38506853:G:GG | acceptor_gain | 1.0000 |
| 3:38506853:G:GT | acceptor_loss | 1.0000 |
| 3:38506853:GA:G | acceptor_gain | 1.0000 |
| 3:38506853:GAAT:G | acceptor_gain | 1.0000 |
| 3:38506853:GAATA:G | acceptor_gain | 1.0000 |
| 3:38506964:ACCAG:A | donor_loss | 1.0000 |
| 3:38506968:GGTA:G | donor_loss | 1.0000 |
| 3:38506969:GT:G | donor_loss | 1.0000 |
| 3:38506970:T:A | donor_loss | 1.0000 |
| 3:38523895:TTTTA:T | acceptor_loss | 1.0000 |
| 3:38523896:TTTA:T | acceptor_loss | 1.0000 |
| 3:38523898:TAGGT:T | acceptor_loss | 1.0000 |
| 3:38523899:A:AG | acceptor_gain | 1.0000 |
| 3:38523899:AGGT:A | acceptor_gain | 1.0000 |
| 3:38523900:G:GG | acceptor_gain | 1.0000 |
| 3:38523900:GGT:G | acceptor_gain | 1.0000 |
| 3:38523900:GGTG:G | acceptor_gain | 1.0000 |
| 3:38496517:G:T | donor_gain | 0.9900 |
| 3:38496526:GGATG:G | donor_gain | 0.9900 |
| 3:38496527:GATG:G | donor_gain | 0.9900 |
AlphaMissense
2406 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:38501381:T:C | F114L | 0.999 |
| 3:38501383:T:A | F114L | 0.999 |
| 3:38501383:T:G | F114L | 0.999 |
| 3:38503633:T:C | F158L | 0.999 |
| 3:38503635:T:A | F158L | 0.999 |
| 3:38503635:T:G | F158L | 0.999 |
| 3:38503647:C:A | N162K | 0.998 |
| 3:38503647:C:G | N162K | 0.998 |
| 3:38503684:T:A | W175R | 0.998 |
| 3:38503684:T:C | W175R | 0.998 |
| 3:38503686:G:C | W175C | 0.997 |
| 3:38503686:G:T | W175C | 0.997 |
| 3:38506871:G:C | R183P | 0.997 |
| 3:38497742:T:A | W93R | 0.996 |
| 3:38497742:T:C | W93R | 0.996 |
| 3:38501367:G:C | R109T | 0.996 |
| 3:38501368:A:C | R109S | 0.996 |
| 3:38501368:A:T | R109S | 0.996 |
| 3:38501459:C:G | H140D | 0.996 |
| 3:38503655:C:A | P165H | 0.996 |
| 3:38506859:A:T | E179V | 0.996 |
| 3:38506860:A:C | E179D | 0.996 |
| 3:38506860:A:T | E179D | 0.996 |
| 3:38523926:T:A | V224D | 0.996 |
| 3:38497737:C:A | P91H | 0.995 |
| 3:38501382:T:C | F114S | 0.995 |
| 3:38501382:T:G | F114C | 0.995 |
| 3:38501461:C:A | H140Q | 0.995 |
| 3:38501461:C:G | H140Q | 0.995 |
| 3:38503674:T:A | N171K | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000037963 (3:38507385 G>C), RS1000399044 (3:38503463 A>C), RS1000594575 (3:38522109 A>G), RS1000742365 (3:38495788 C>T), RS1000778515 (3:38515505 G>A,C), RS1000786067 (3:38508688 C>A,T), RS1000797219 (3:38494351 C>G,T), RS1001015856 (3:38502090 T>C), RS1001153098 (3:38495299 A>G), RS1001282027 (3:38504307 A>T), RS1001301252 (3:38497314 T>A,C,G), RS1001343259 (3:38519870 A>T), RS1001529384 (3:38502237 T>A), RS1001693629 (3:38521845 C>T), RS1001701437 (3:38522516 T>A,C)
Disease associations
OMIM: gene MIM:604051 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
21 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002457_2 | P wave duration | 8.000000e-27 |
| GCST002533_6 | QRS duration | 2.000000e-06 |
| GCST002535_3 | PR interval | 1.000000e-14 |
| GCST003598_24 | QRS duration | 3.000000e-23 |
| GCST007328_75 | Alcohol consumption (drinks per week) | 7.000000e-09 |
| GCST008059_65 | Estimated glomerular filtration rate | 7.000000e-24 |
| GCST010796_3766 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_3767 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-09 |
| GCST010796_3768 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-10 |
| GCST010796_3769 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-11 |
| GCST010796_3770 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-11 |
| GCST010796_3771 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-11 |
| GCST010796_3772 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-11 |
| GCST010796_3773 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-11 |
| GCST010796_3774 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-10 |
| GCST010796_3775 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-10 |
| GCST010796_3851 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-10 |
| GCST010796_3852 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_3853 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-08 |
| GCST010796_3854 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-11 |
| GCST90000025_733 | Appendicular lean mass | 1.000000e-21 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005094 | P wave duration |
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
| EFO:0004980 | appendicular lean mass |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Cisplatin | increases expression | 1 |
| Cytarabine | decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Demecolcine | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Nickel | increases expression | 1 |
| Niclosamide | decreases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Silver | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Vincristine | decreases expression | 1 |
| Sodium Selenite | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_DX16 | HAP1 EXOG (-) 1 | Cancer cell line | Male |
| CVCL_DX17 | HAP1 EXOG (-) 2 | Cancer cell line | Male |
| CVCL_DX18 | HAP1 EXOG (-) 4 | Cancer cell line | Male |
| CVCL_DX19 | HAP1 EXOG (-) 5 | Cancer cell line | Male |
| CVCL_XN59 | HAP1 EXOG (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.