EXT2
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Also known as SOTV
Summary
EXT2 (exostosin glycosyltransferase 2, HGNC:3513) is a protein-coding gene on chromosome 11p11.2, encoding Exostosin-2 (Q93063). Glycosyltransferase forming with EXT1 the heterodimeric heparan sulfate polymerase which catalyzes the elongation of the heparan sulfate glycan backbone. It is a selective cancer dependency (DepMap: 12.9% of cell lines) and haploinsufficient (ClinGen: sufficient evidence).
This gene encodes one of two glycosyltransferases involved in the chain elongation step of heparan sulfate biosynthesis. Mutations in this gene cause the type II form of multiple exostoses. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene.
Source: NCBI Gene 2132 — RefSeq curated summary.
At a glance
- Gene–disease (curated): exostoses, multiple, type 2 (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 1,033 total — 196 pathogenic, 41 likely-pathogenic
- Phenotypes (HPO): 142
- Cancer dependency (DepMap): dependent in 12.9% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_207122
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3513 |
| Approved symbol | EXT2 |
| Name | exostosin glycosyltransferase 2 |
| Location | 11p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SOTV |
| Ensembl gene | ENSG00000151348 |
| Ensembl biotype | protein_coding |
| OMIM | 608210 |
| Entrez | 2132 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 17 protein_coding, 6 retained_intron, 5 nonsense_mediated_decay, 4 protein_coding_CDS_not_defined
ENST00000343631, ENST00000358681, ENST00000395673, ENST00000525559, ENST00000528159, ENST00000529186, ENST00000531161, ENST00000533608, ENST00000534048, ENST00000682359, ENST00000682711, ENST00000682815, ENST00000682947, ENST00000682993, ENST00000683000, ENST00000683204, ENST00000683299, ENST00000683870, ENST00000683881, ENST00000684039, ENST00000684124, ENST00000684437, ENST00000684533, ENST00000860016, ENST00000860017, ENST00000860018, ENST00000860019, ENST00000860020, ENST00000860021, ENST00000860022, ENST00000958404, ENST00000958405
RefSeq mRNA: 5 — MANE Select: NM_207122
NM_000401, NM_001178083, NM_001389628, NM_001389630, NM_207122
CCDS: CCDS53619, CCDS7908
Canonical transcript exons
ENST00000533608 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000824551 | 44197829 | 44198018 |
| ENSE00000999053 | 44124789 | 44124984 |
| ENSE00001101378 | 44236293 | 44236375 |
| ENSE00001324401 | 44095678 | 44095852 |
| ENSE00002176251 | 44244149 | 44251962 |
| ENSE00003477895 | 44171611 | 44171742 |
| ENSE00003505813 | 44206793 | 44206959 |
| ENSE00003519127 | 44114185 | 44114301 |
| ENSE00003525485 | 44130045 | 44130138 |
| ENSE00003545357 | 44107683 | 44108248 |
| ENSE00003556991 | 44232353 | 44232496 |
| ENSE00003558187 | 44109194 | 44109283 |
| ENSE00003646599 | 44234115 | 44234243 |
| ENSE00003663664 | 44126816 | 44126955 |
Expression profiles
Bgee: expression breadth ubiquitous, 269 present calls, max score 97.35.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 57.8422 / max 315.0899, expressed in 1824 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 113981 | 36.3265 | 1821 |
| 113980 | 6.8219 | 1745 |
| 113982 | 6.7590 | 1751 |
| 113983 | 6.7248 | 1704 |
| 113984 | 1.2100 | 570 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 97.35 | gold quality |
| cartilage tissue | UBERON:0002418 | 94.92 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 94.87 | gold quality |
| tibia | UBERON:0000979 | 94.53 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.21 | gold quality |
| body of uterus | UBERON:0009853 | 93.53 | gold quality |
| thoracic aorta | UBERON:0001515 | 93.49 | gold quality |
| ascending aorta | UBERON:0001496 | 93.47 | gold quality |
| right coronary artery | UBERON:0001625 | 93.47 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 93.30 | gold quality |
| ventricular zone | UBERON:0003053 | 93.29 | gold quality |
| periodontal ligament | UBERON:0008266 | 93.15 | gold quality |
| left uterine tube | UBERON:0001303 | 92.87 | gold quality |
| left coronary artery | UBERON:0001626 | 92.60 | gold quality |
| endocervix | UBERON:0000458 | 92.51 | gold quality |
| aorta | UBERON:0000947 | 92.39 | gold quality |
| coronary artery | UBERON:0001621 | 92.23 | gold quality |
| gall bladder | UBERON:0002110 | 92.15 | gold quality |
| pericardium | UBERON:0002407 | 92.11 | gold quality |
| myometrium | UBERON:0001296 | 92.00 | gold quality |
| left ovary | UBERON:0002119 | 91.93 | gold quality |
| right ovary | UBERON:0002118 | 91.91 | gold quality |
| popliteal artery | UBERON:0002250 | 91.66 | gold quality |
| tibial artery | UBERON:0007610 | 91.66 | gold quality |
| placenta | UBERON:0001987 | 91.59 | gold quality |
| ectocervix | UBERON:0012249 | 91.56 | gold quality |
| peritoneum | UBERON:0002358 | 91.52 | gold quality |
| omental fat pad | UBERON:0010414 | 91.52 | gold quality |
| decidua | UBERON:0002450 | 91.40 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 91.22 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.44 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
51 targeting EXT2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-4677-5P | 99.70 | 70.09 | 1940 |
| HSA-MIR-518A-5P | 99.70 | 69.01 | 2209 |
| HSA-MIR-527 | 99.70 | 69.01 | 2209 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
| HSA-MIR-7156-5P | 99.64 | 68.81 | 1369 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-1260A | 99.61 | 66.67 | 1098 |
| HSA-MIR-1260B | 99.61 | 66.67 | 1098 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
| HSA-MIR-4524A-5P | 99.57 | 71.73 | 1193 |
| HSA-MIR-4524B-5P | 99.57 | 71.68 | 1195 |
| HSA-MIR-4728-3P | 99.47 | 68.94 | 981 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
| HSA-MIR-2116-5P | 99.32 | 69.34 | 1273 |
| HSA-MIR-6719-3P | 99.29 | 67.78 | 1387 |
| HSA-MIR-580-5P | 99.28 | 70.94 | 1776 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-1207-3P | 98.99 | 66.22 | 1532 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 12.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- the EXT1/2 heterocomplex can act as heparan sulfate polymerases in vitro without the addition of additional auxiliary proteins (PMID:12907669)
- 112delAT causes multiple exostoses, indicating full penetrance since relatives with isolated exotoses lacked this deletion. (PMID:14654969)
- Variations in EXT2 gene is associated with multiple osteochondromas (PMID:15586175)
- Promoter methylation was not detected in any of the chondrosarcoma cases in EXT2. (PMID:15796962)
- analysis of multiple osteochondroma-related mutations in EXT1 and EXT2 (PMID:16088908)
- We found three novel mutations (S277X in the EXT1 gene, and G194X and 939+1G>A in the EXT2 gene) and a known mutation (Q172X in the EXT2 gene)in hereditary multiple exostoses (PMID:16638657)
- Detection of mutations in EXT2 gene can significantly improve the identification of both point-mutations and mid-size rearrangemements in osteochrondromas. (PMID:17301954)
- Hereditary multiple exostosis patients with mutations in EXT1 gene have more anatomic abnormality and burden than those with EXT2 mutations. (PMID:17589361)
- Compared to EXT2-linkage, female individuals with EXT1-linkage were smaller in stature. (PMID:17676624)
- capacity of wild type EXT2 to enhance heparan sulfate chain length together with EXT1 was not shared by the EXT2-Y419X mutant (PMID:17761672)
- A novel mutation, c505 G > T, in the EXT2 gene was identified in two unrelated Chinese families with hereditary multiple exostoses. (PMID:18294062)
- found EXT1 to be responsible in seven families (19 affected members) and EXT2 in four families (17 affected members) with multiple osteochondromas (PMID:18373409)
- A novel mutation in EXT2 gene in a Chinese family with hereditary exostoses is reported. (PMID:18666861)
- Data show that SNPs in EXT2 did not confer a significant risk for type 2 diabetes in Pima Indians. (PMID:19008344)
- The tumor suppressor gene EXT2 is involved in the formation of multiple osteochondromas, which can progress to become secondary peripheral chondrosarcomas. (PMID:19179614)
- A previously unreported stop mutation, the substitution c.817C>T, was observed in the EXT2 gene in an Indian pedigree of hereditary multiple exostoses families. (PMID:19309273)
- Novel mutations have been identified in the EXT1 and the EXT2 gene in 17 Multiple Osteochondromas patients. (PMID:19344451)
- Two novel EXT1 gene mutations and two novel EXT2 gene mutations were identified in two and three hereditary multiple exostoses pedigrees, respectively. (PMID:19839753)
- The nonsens mutation 536G>A in the EXT2 is the disease-causing mutation in a family with hereditary multiple exostoses. (PMID:20140877)
- results clearly indicate that, in most cases, biallelic inactivation of EXT genes does not account for osteochondromas formation; this mechanism should be regarded as a common feature for hereditary osteochondromas transformation (PMID:20418910)
- Loss of heterozygosity for EXT2 is associated with multiple osteochondromas. (PMID:20813973)
- primary defect in EXT2 mRNA level can produce profound effect on the synthesis of HS chains in cartilage, the consequence of which impacts on the regulation of chondrocyte proliferation and differentiation. (PMID:20872591)
- 8 novel mutations of EXT1 and EXT2 genes among families and sporadic cases with multiple exostoses were identified. (PMID:21039224)
- Fifteen mutations and large deletions, of which nine are new, were detected in the EXT1 and EXT2 gene by sequence analysis, FISH and MLPA analysis. (PMID:21499719)
- Association of genetic variations in EXT2 with Type 2 diabetes mellitus in Tunisia (PMID:21510814)
- Molecular characterization of EXT1- and EXT2-deletion breakpoints in multiple osteochondroma indicates that non-allelic homologous recombination between Alu-sequences as well as NHEJ are causal and that the majority of these deletions are nonrecurring. (PMID:21703028)
- Two novel EXT1 gene mutations were identified and no mutation was found in EXT2 gene in two families with multiple osteochodromas. (PMID:22040554)
- analysis of novel pathogenic mutations in EXT1 and EXT2 that may have roles in multiple osteochondroma in Chinese patients (PMID:22820392)
- A meta analysis indicates variation in the EXT2 locus appears to be associated with a small increase in the risk of type 2 diabetes. (PMID:23052945)
- 20 novel EXT1/EXT2 mutations and one large EXT2 deletion identified in the largest Southern Italy cohort of patients affected by hereditary multiple exostosis. (PMID:23262345)
- we found a mutation in EXT1 or in EXT2 in 95% of the Spanish patients. Eighteen of the mutations were novel. (PMID:23439489)
- No mutations have been found among all exons of the EXT1 and EXT2 genes in this family. Linkage analysis is necessary for identifying the cause of this disease. (PMID:23450490)
- Novel and recurrent mutations occur in the EXT1 and EXT2 genes in Chinese kindreds with multiple osteochondromas. (PMID:23629877)
- This study demonstrated no association of rs1113132, rs3740878 and rs11037909 EXT2 variants with type 2 diabetes mellitus. (PMID:23871501)
- these findings are useful for extending the mutational spectrum in EXT1 and EXT2 and understanding the genetic basis of multiple osteochondromas in Chinese patients. (PMID:24120389)
- EXT1 and EXT2 heterozygous mutations in 18 (54.6 %) and ten (30.3 %) probands respectively, which represents a total of 28 (84.9 %) index cases. (PMID:24532482)
- The heterozygous mutation c.743+1G>A in the EXT2 gene causes HME as a result of abnormal splicing, mRNA decay, and the resulting haploinsufficiency of EXT2. (PMID:24728384)
- EXT2 gene might not have a major role in the development of type 2 diabetes in the Chinese population. (PMID:25207843)
- EXT2 mutation is associated with multiple osteochondromatosis. (PMID:25230886)
- The second exon of EXT2. A c.244delG mutation is associated with hereditary multiple exostosis. (PMID:25449079)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ext2 | ENSDARG00000056648 |
| mus_musculus | Ext2 | ENSMUSG00000027198 |
| rattus_norvegicus | Ext2 | ENSRNOG00000008944 |
| drosophila_melanogaster | sotv | FBGN0029175 |
Paralogs (4): EXTL3 (ENSG00000012232), EXTL1 (ENSG00000158008), EXTL2 (ENSG00000162694), EXT1 (ENSG00000182197)
Protein
Protein identifiers
Exostosin-2 — Q93063 (reviewed: Q93063)
Alternative names: Exostosin glycosyltransferase 2, Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase, Heparan sulfate co-polymerase subunit EXT1, Multiple exostoses protein 2
All UniProt accessions (8): A0A804HHX4, A0A804HIU8, A0A804HJW9, A0A804HKG2, A0A804HKG8, A0A804HL74, A0A804HLF7, Q93063
UniProt curated annotations — full annotation on UniProt →
Function. Glycosyltransferase forming with EXT1 the heterodimeric heparan sulfate polymerase which catalyzes the elongation of the heparan sulfate glycan backbone. Glycan backbone extension consists in the alternating transfer of (1->4)-beta-D-GlcA and (1->4)-alpha-D-GlcNAc residues from their respective UDP-sugar donors. Both EXT1 and EXT2 are required for the full activity of the polymerase since EXT1 bears the N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity within the complex while EXT2 carries the glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Heparan sulfate proteoglycans are ubiquitous components of the extracellular matrix and play an important role in tissue homeostasis and signaling.
Subunit / interactions. Part of the heparan sulfate polymerase, a dimeric complex composed of EXT1 and EXT2. Could also form homooligomeric complexes. Interacts with NDST1. Interacts with GALNT5.
Subcellular location. Golgi apparatus membrane. Golgi apparatus. cis-Golgi network membrane. Endoplasmic reticulum membrane. Secreted.
Tissue specificity. Widely expressed.
Post-translational modifications. N-glycosylated at Asn-637. A soluble form is generated by proteolytic processing.
Disease relevance. Hereditary multiple exostoses 2 (EXT2) [MIM:133701] EXT is a genetically heterogeneous bone disorder caused by genes segregating on human chromosomes 8, 11, and 19 and designated EXT1, EXT2 and EXT3 respectively. EXT is a dominantly inherited skeletal disorder primarily affecting endochondral bone during growth. The disease is characterized by formation of numerous cartilage-capped, benign bone tumors (osteocartilaginous exostoses or osteochondromas) that are often accompanied by skeletal deformities and short stature. In a small percentage of cases exostoses have exhibited malignant transformation resulting in an osteosarcoma or chondrosarcoma. Osteochondromas development can also occur as a sporadic event. The disease is caused by variants affecting the gene represented in this entry. Seizures, scoliosis, and macrocephaly/microcephaly syndrome (SSMS) [MIM:616682] An autosomal recessive syndrome characterized by seizures, intellectual disability, hypotonia, scoliosis, macrocephaly, hypertelorism and renal dysfunction. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein glycosylation.
Similarity. Belongs to the glycosyltransferase 47 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q93063-1 | 1 | yes |
| Q93063-2 | 2 | |
| Q93063-3 | 3 |
RefSeq proteins (5): NP_000392, NP_001171554, NP_001376557, NP_001376559, NP_997005* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004263 | Exostosin | Family |
| IPR015338 | GT64_dom | Domain |
| IPR029044 | Nucleotide-diphossugar_trans | Homologous_superfamily |
| IPR040911 | Exostosin_GT47 | Domain |
Pfam: PF03016, PF09258
Enzyme classification (BRENDA):
- EC 2.4.1.224 — glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase (BRENDA: 10 organisms, 19 substrates, 0 inhibitors, 8 Km, 0 kcat entries)
- EC 2.4.1.225 — N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase (BRENDA: 9 organisms, 7 substrates, 0 inhibitors, 0 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| UDP-N-ACETYL-D-GLUCOSAMINE | 0.094–1.2 | 4 |
| (MANNOSE)9-N-ACETYL-D-GLUCOSAMINE | 0.65 | 1 |
| [D-GLUCURONIC ACID-N-ACETYL-GLUCOSAMINE]14 -D-GL | 0.006 | 1 |
| [D-GLUCURONIC ACID-N-ACETYL-GLUCOSAMINE]4 -D-GLU | 0.06 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- 3-O-{(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl}-L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-{alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl}-L-seryl-[protein] + UDP + H(+) (RHEA:16213)
UniProt features (120 total): strand 28, helix 25, binding site 21, sequence variant 11, mutagenesis site 10, turn 9, disulfide bond 5, sequence conflict 3, topological domain 2, glycosylation site 2, splice variant 2, chain 1, transmembrane region 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7SCK | ELECTRON MICROSCOPY | 2.8 |
| 7ZAY | ELECTRON MICROSCOPY | 2.8 |
| 7UQY | ELECTRON MICROSCOPY | 3 |
| 7SCH | ELECTRON MICROSCOPY | 3.1 |
| 7UQX | ELECTRON MICROSCOPY | 3.3 |
| 7SCJ | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q93063-F1 | 87.59 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (21): 517; 522; 538; 538; 539; 539; 540; 540; 582; 584; 627; 628 …
Disulfide bonds (5): 85–90, 96–151, 286–300, 318–339, 626–676
Glycosylation sites (2): 288, 637
Mutagenesis-validated functional residues (10):
| Position | Phenotype |
|---|---|
| 266 | no effect on n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. |
| 308 | increased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. decreased glucuronosyl-n-acetylgluc |
| 325 | increased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. no effect on glucuronosyl-n-acetylg |
| 328 | no effect on n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. no effect on glucuronosyl-n-acet |
| 538 | decreased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. loss of glucuronosyl-n-acetylglucos |
| 538 | decreased glucuronosyl-n-acetylglucosaminyl-proteoglycan 4-alpha-n-acetylglucosaminyltransferase activity; when associat |
| 540 | increased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. decreased glucuronosyl-n-acetylgluc |
| 540 | decreased glucuronosyl-n-acetylglucosaminyl-proteoglycan 4-alpha-n-acetylglucosaminyltransferase activity; when associat |
| 569 | increased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. loss of glucuronosyl-n-acetylglucos |
| 585 | decreased n-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. decreased glucuronosyl-n-acetylgluc |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-2022928 | HS-GAG biosynthesis |
| R-HSA-3656237 | Defective EXT2 causes exostoses 2 |
| R-HSA-3656253 | Defective EXT1 causes exostoses 1, TRPS2 and CHDS |
MSigDB gene sets: 453 (showing top):
GOBP_POLYSACCHARIDE_BIOSYNTHETIC_PROCESS, GOBP_REGULATION_OF_BLOOD_PRESSURE, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_FORMATION_OF_PRIMARY_GERM_LAYER, GOBP_PROTEIN_N_LINKED_GLYCOSYLATION, DARWICHE_SKIN_TUMOR_PROMOTER_UP, DARWICHE_PAPILLOMA_RISK_LOW_UP, DARWICHE_PAPILLOMA_RISK_HIGH_UP, DARWICHE_SQUAMOUS_CELL_CARCINOMA_UP, GOBP_SULFATION, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_AMINOGLYCAN_BIOSYNTHETIC_PROCESS, GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_SIZE, CCANNAGRKGGC_UNKNOWN
GO Biological Process (19): polysaccharide biosynthetic process (GO:0000271), ossification (GO:0001503), mesoderm formation (GO:0001707), chondrocyte differentiation (GO:0002062), glycosaminoglycan biosynthetic process (GO:0006024), protein N-linked glycosylation (GO:0006487), regulation of blood pressure (GO:0008217), gene expression (GO:0010467), heparan sulfate proteoglycan biosynthetic process (GO:0015012), heparin proteoglycan biosynthetic process (GO:0030210), fluid transport (GO:0042044), vasodilation (GO:0042311), cellular response to fibroblast growth factor stimulus (GO:0044344), multicellular organismal-level water homeostasis (GO:0050891), sulfation (GO:0051923), sodium ion homeostasis (GO:0055078), heart contraction (GO:0060047), endochondral bone morphogenesis (GO:0060350), obsolete protein glycosylation (GO:0006486)
GO Molecular Function (10): glucuronosyltransferase activity (GO:0015020), glycosyltransferase activity (GO:0016757), heparan sulfate N-acetylglucosaminyltransferase activity (GO:0042328), metal ion binding (GO:0046872), protein heterodimerization activity (GO:0046982), glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity (GO:0050508), N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity (GO:0050509), protein binding (GO:0005515), acetylglucosaminyltransferase activity (GO:0008375), transferase activity (GO:0016740)
GO Cellular Component (9): Golgi membrane (GO:0000139), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), membrane (GO:0016020), UDP-N-acetylglucosamine transferase complex (GO:0043541), extracellular exosome (GO:0070062), catalytic complex (GO:1902494), extracellular region (GO:0005576), endoplasmic reticulum membrane (GO:0005789)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Diseases associated with glycosaminoglycan metabolism | 2 |
| Heparan sulfate/heparin (HS-GAG) metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| macromolecule biosynthetic process | 2 |
| blood circulation | 2 |
| protein O-linked glycosylation via xylose | 2 |
| UDP-glycosyltransferase activity | 2 |
| hexosyltransferase activity | 2 |
| acetylglucosaminyltransferase activity | 2 |
| cytoplasm | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| cellular anatomical structure | 2 |
| polysaccharide metabolic process | 1 |
| carbohydrate biosynthetic process | 1 |
| multicellular organismal process | 1 |
| formation of primary germ layer | 1 |
| mesoderm morphogenesis | 1 |
| cell differentiation | 1 |
| cartilage development | 1 |
| aminoglycan biosynthetic process | 1 |
| glycosaminoglycan metabolic process | 1 |
| glycoprotein biosynthetic process | 1 |
| regulation of biological quality | 1 |
| proteoglycan biosynthetic process | 1 |
| heparan sulfate proteoglycan metabolic process | 1 |
| heparin proteoglycan metabolic process | 1 |
| transport | 1 |
| blood vessel diameter maintenance | 1 |
| cellular response to growth factor stimulus | 1 |
| response to fibroblast growth factor | 1 |
| regulation of body fluid levels | 1 |
| multicellular organismal-level chemical homeostasis | 1 |
| sulfur compound metabolic process | 1 |
| monoatomic cation homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| heart process | 1 |
| bone morphogenesis | 1 |
| transferase activity | 1 |
| cation binding | 1 |
| protein dimerization activity | 1 |
| glucuronosyltransferase activity | 1 |
| binding | 1 |
Protein interactions and networks
STRING
1044 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EXT2 | EXT1 | Q16394 | 986 |
| EXT2 | NDST1 | P52848 | 941 |
| EXT2 | ALX4 | Q9H161 | 912 |
| EXT2 | HHEX | Q03014 | 784 |
| EXT2 | HS2ST1 | Q7LGA3 | 774 |
| EXT2 | SLC30A8 | Q8IWU4 | 768 |
| EXT2 | POLR1F | Q3B726 | 748 |
| EXT2 | NDST2 | P52849 | 742 |
| EXT2 | DUSP16 | Q9BY84 | 677 |
| EXT2 | SLC35B2 | Q8TB61 | 670 |
| EXT2 | B4GALT7 | Q9UBV7 | 668 |
| EXT2 | TRAP1 | Q12931 | 663 |
| EXT2 | K7EP71 | K7EP71 | 663 |
| EXT2 | KIF11 | P52732 | 658 |
| EXT2 | B3GAT3 | O94766 | 657 |
IntAct
88 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PIK3CA | PIK3R2 | psi-mi:“MI:0914”(association) | 0.900 |
| EXT1 | EXT2 | psi-mi:“MI:2364”(proximity) | 0.890 |
| EXT1 | EXT2 | psi-mi:“MI:0407”(direct interaction) | 0.890 |
| SLC39A5 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| EXT2 | SLC22A2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| GSKIP | EXT2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| EXT2 | ANXA7 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CDKN1A | EXT2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PFDN1 | EXT2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| EXT2 | SMN1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TK1 | EXT2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| M2 | IPO5 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| CANX | HLA-A | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM106A | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| MPPE1 | FAM234B | psi-mi:“MI:0914”(association) | 0.350 |
| PSCA | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| SCGB2A2 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
| GPIHBP1 | SAC3D1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMPRSS13 | TOR1A | psi-mi:“MI:0914”(association) | 0.350 |
| HPN | TOR1A | psi-mi:“MI:0914”(association) | 0.350 |
| EXT2 | EXTL3 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM106A | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-C | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (110): EXT2 (Affinity Capture-MS), INVS (Affinity Capture-MS), TTC19 (Affinity Capture-MS), RBFA (Affinity Capture-MS), EXT1 (Affinity Capture-MS), AFAP1 (Affinity Capture-MS), ATE1 (Affinity Capture-MS), CUX1 (Affinity Capture-MS), USP30 (Affinity Capture-MS), NOP9 (Affinity Capture-MS), HLA-DPB1 (Affinity Capture-MS), STK16 (Affinity Capture-MS), SNCG (Affinity Capture-MS), HYOU1 (Affinity Capture-MS), CNTF (Affinity Capture-MS)
ESM2 similar proteins: A4IID1, A5D7I4, A5PK45, A9X1C8, G5E897, O12971, O60568, O77783, O95803, P52848, P52849, P52850, P70428, P97464, Q02353, Q16394, Q3UHN9, Q5F407, Q5IGR6, Q5IGR7, Q5IGR8, Q5M854, Q5R6K5, Q5RBC3, Q5U367, Q5U4X8, Q6EV56, Q6GMK0, Q6GQI7, Q6GQK9, Q6IS24, Q6UW63, Q6ZQ11, Q7TT15, Q7Z4H8, Q812F8, Q86X52, Q8K297, Q8NBJ5, Q8VHI3
Diamond homologs: A2Y6Z7, O01705, O43909, O77783, P70428, Q53WK1, Q5IGR8, Q5RBC3, Q84WB7, Q93063, Q9WVL6, Q9XZ08, Q9Y169, A5D7I4, A9X1C8, O01704, P97464, Q16394, Q33AH8, Q5IGR6, Q5IGR7, Q92935, Q9C975, Q9ES89, Q9JK82, Q9JKV7, Q9LY62, Q9SSE8, Q9UBQ6, Q9V730, A9RGD8, Q10SX7, Q3E9A4, Q3EAR7, Q6H4N0, Q6NMM8, Q7XLG3, Q8S1X7, Q8S1X8, Q8S1X9
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EXT2 | “form complex” | EXT1/EXT2 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1033 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 196 |
| Likely pathogenic | 41 |
| Uncertain significance | 404 |
| Likely benign | 247 |
| Benign | 55 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069929 | NM_207122.2(EXT2):c.282T>A (p.Tyr94Ter) | Pathogenic |
| 1073638 | NM_207122.2(EXT2):c.1234C>T (p.Gln412Ter) | Pathogenic |
| 1073639 | NM_207122.2(EXT2):c.1287G>A (p.Trp429Ter) | Pathogenic |
| 1074447 | NM_207122.2(EXT2):c.64_68del (p.His22fs) | Pathogenic |
| 1076808 | NM_207122.2(EXT2):c.1577dup (p.Tyr526Ter) | Pathogenic |
| 1076816 | NM_207122.2(EXT2):c.783_784del (p.His262fs) | Pathogenic |
| 1175790 | NM_207122.2(EXT2):c.484C>T (p.Gln162Ter) | Pathogenic |
| 1211965 | NM_207122.2(EXT2):c.536+1G>A | Pathogenic |
| 1224433 | NM_207122.2(EXT2):c.540G>A (p.Trp180Ter) | Pathogenic |
| 1251963 | NM_207122.2(EXT2):c.728del (p.Pro243fs) | Pathogenic |
| 1351327 | NM_207122.2(EXT2):c.516del (p.Ala173fs) | Pathogenic |
| 1352684 | NM_207122.2(EXT2):c.680A>G (p.Asp227Gly) | Pathogenic |
| 1376872 | NM_207122.2(EXT2):c.1080-2A>G | Pathogenic |
| 1378644 | NM_207122.2(EXT2):c.1080-1G>A | Pathogenic |
| 1382216 | NM_207122.2(EXT2):c.729del (p.Glu244fs) | Pathogenic |
| 1386232 | NM_207122.2(EXT2):c.398_402del (p.Leu133fs) | Pathogenic |
| 1392678 | NM_207122.2(EXT2):c.537-4_561del | Pathogenic |
| 1405824 | NM_207122.2(EXT2):c.620_626+158del | Pathogenic |
| 1407563 | NM_207122.2(EXT2):c.705_706del (p.Leu236fs) | Pathogenic |
| 1409142 | NM_207122.2(EXT2):c.779del (p.Gly260fs) | Pathogenic |
| 1414023 | NM_207122.2(EXT2):c.1824T>A (p.Tyr608Ter) | Pathogenic |
| 1417949 | NM_207122.2(EXT2):c.1013del (p.Gly338fs) | Pathogenic |
| 1427412 | NM_207122.2(EXT2):c.750del (p.Gln251fs) | Pathogenic |
| 1432441 | NM_207122.2(EXT2):c.1003_1004insA (p.Leu335fs) | Pathogenic |
| 1451350 | NM_207122.2(EXT2):c.939+1del | Pathogenic |
| 1454141 | NM_207122.2(EXT2):c.89del (p.Phe30fs) | Pathogenic |
| 1455305 | NM_207122.2(EXT2):c.1201del (p.Gln401fs) | Pathogenic |
| 1456520 | NM_207122.2(EXT2):c.1080-1G>T | Pathogenic |
| 1456787 | NM_207122.2(EXT2):c.1080-2del | Pathogenic |
| 1457792 | NM_207122.2(EXT2):c.244dup (p.Asp82fs) | Pathogenic |
SpliceAI
2264 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:44104768:G:GT | donor_gain | 1.0000 |
| 11:44107673:T:A | acceptor_gain | 1.0000 |
| 11:44114179:TTTCA:T | acceptor_loss | 1.0000 |
| 11:44114180:TTCA:T | acceptor_loss | 1.0000 |
| 11:44114181:TCA:T | acceptor_loss | 1.0000 |
| 11:44114182:CAGG:C | acceptor_loss | 1.0000 |
| 11:44114183:A:C | acceptor_loss | 1.0000 |
| 11:44114184:G:GT | acceptor_loss | 1.0000 |
| 11:44114300:GG:G | donor_gain | 1.0000 |
| 11:44114301:GG:G | donor_gain | 1.0000 |
| 11:44124787:A:AG | acceptor_gain | 1.0000 |
| 11:44124788:G:GG | acceptor_gain | 1.0000 |
| 11:44126811:TGCAG:T | acceptor_loss | 1.0000 |
| 11:44126812:GCAGG:G | acceptor_loss | 1.0000 |
| 11:44126813:CA:C | acceptor_loss | 1.0000 |
| 11:44126813:CAGG:C | acceptor_gain | 1.0000 |
| 11:44126814:AG:A | acceptor_gain | 1.0000 |
| 11:44126814:AGGA:A | acceptor_gain | 1.0000 |
| 11:44126814:AGGAG:A | acceptor_gain | 1.0000 |
| 11:44126815:GG:G | acceptor_gain | 1.0000 |
| 11:44126815:GGAG:G | acceptor_gain | 1.0000 |
| 11:44126815:GGAGG:G | acceptor_gain | 1.0000 |
| 11:44126951:AAGAG:A | donor_loss | 1.0000 |
| 11:44126952:AGAGG:A | donor_loss | 1.0000 |
| 11:44126953:GAG:G | donor_gain | 1.0000 |
| 11:44126953:GAGG:G | donor_loss | 1.0000 |
| 11:44126954:AGG:A | donor_loss | 1.0000 |
| 11:44126957:T:G | donor_loss | 1.0000 |
| 11:44126961:T:TA | donor_gain | 1.0000 |
| 11:44126962:A:AA | donor_gain | 1.0000 |
AlphaMissense
4723 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:44107998:T:A | C96S | 1.000 |
| 11:44107999:G:C | C96S | 1.000 |
| 11:44108163:T:C | C151R | 1.000 |
| 11:44108164:G:A | C151Y | 1.000 |
| 11:44108165:T:G | C151W | 1.000 |
| 11:44171687:G:C | R417P | 1.000 |
| 11:44197890:T:C | F456S | 1.000 |
| 11:44197896:C:A | A458D | 1.000 |
| 11:44197905:T:C | L461P | 1.000 |
| 11:44197917:G:C | R465P | 1.000 |
| 11:44197983:T:A | V487D | 1.000 |
| 11:44197986:T:A | V488D | 1.000 |
| 11:44197988:T:A | W489R | 1.000 |
| 11:44197988:T:C | W489R | 1.000 |
| 11:44197990:G:C | W489C | 1.000 |
| 11:44197990:G:T | W489C | 1.000 |
| 11:44197993:T:A | N490K | 1.000 |
| 11:44197993:T:G | N490K | 1.000 |
| 11:44206853:T:C | L519S | 1.000 |
| 11:44206855:A:C | S520R | 1.000 |
| 11:44206857:T:A | S520R | 1.000 |
| 11:44206857:T:G | S520R | 1.000 |
| 11:44206861:C:A | R522S | 1.000 |
| 11:44206864:T:C | F523L | 1.000 |
| 11:44206865:T:C | F523S | 1.000 |
| 11:44206866:C:A | F523L | 1.000 |
| 11:44206866:C:G | F523L | 1.000 |
| 11:44206901:T:C | L535P | 1.000 |
| 11:44206909:G:C | D538H | 1.000 |
| 11:44206910:A:C | D538A | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002649 (11:44146601 T>C), RS1000009999 (11:44192850 G>C), RS1000023977 (11:44160639 A>G), RS1000035219 (11:44146903 T>A), RS1000038363 (11:44238900 A>G,T), RS1000040374 (11:44106264 G>C), RS1000051872 (11:44101584 C>A,G,T), RS1000096303 (11:44179535 G>A), RS1000103115 (11:44139899 G>A), RS1000118498 (11:44160295 T>C), RS1000126742 (11:44251951 G>A,C), RS1000146507 (11:44113198 G>T), RS1000153488 (11:44126064 T>C), RS1000170676 (11:44226430 G>A), RS1000190878 (11:44219825 C>G)
Disease associations
OMIM: gene MIM:608210 | disease phenotypes: MIM:133701, MIM:133700, MIM:616682, MIM:167000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| exostoses, multiple, type 2 | Definitive | Autosomal dominant |
| seizures-scoliosis-macrocephaly syndrome | Strong | Autosomal recessive |
| hereditary multiple osteochondromas | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| exostoses, multiple, type 2 | Definitive | AD |
Mondo (7): exostoses, multiple, type 2 (MONDO:0007586), hereditary multiple osteochondromas (MONDO:0005508), seizures-scoliosis-macrocephaly syndrome (MONDO:0014731), exostoses, multiple, type 1 (MONDO:0007585), hepatoblastoma (MONDO:0018666), ovarian cancer (MONDO:0008170), hereditary neoplastic syndrome (MONDO:0015356)
Orphanet (5): Multiple osteochondromas (Orphanet:321), Seizures-scoliosis-macrocephaly syndrome (Orphanet:466926), Hepatoblastoma (Orphanet:449), Rare ovarian cancer (Orphanet:213500), Inherited cancer-predisposing syndrome (Orphanet:140162)
HPO phenotypes
142 total (30 of 142 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000016 | Urinary retention |
| HP:0000028 | Cryptorchidism |
| HP:0000054 | Micropenis |
| HP:0000077 | Abnormality of the kidney |
| HP:0000093 | Proteinuria |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000280 | Coarse facial features |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000322 | Short philtrum |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000356 | Abnormality of the outer ear |
| HP:0000384 | Preauricular skin tag |
| HP:0000414 | Bulbous nose |
| HP:0000426 | Prominent nasal bridge |
| HP:0000430 | Underdeveloped nasal alae |
| HP:0000437 | Depressed nasal tip |
| HP:0000455 | Broad nasal tip |
| HP:0000486 | Strabismus |
| HP:0000639 | Nystagmus |
| HP:0000717 | Autism |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000750 | Delayed speech and language development |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008163_130 | Height | 8.000000e-06 |
| GCST010002_236 | Refractive error | 2.000000e-24 |
| GCST010396_281 | Gut microbiota (bacterial taxa, hurdle binary method) | 7.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007874 | gut microbiome measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005097 | Exostoses, Multiple Hereditary | C04.557.450.565.575.610.615.325; C04.700.330; C05.116.099.708.670.615.325; C05.116.540.310.500; C16.320.700.330 |
| D018197 | Hepatoblastoma | C04.557.435.380 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression | 5 |
| sodium arsenite | increases expression, decreases expression, affects cotreatment, increases abundance | 3 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| bisphenol F | increases expression, affects cotreatment | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| mono-(2-ethylhexyl)phthalate | decreases methylation, increases abundance | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| ICG 001 | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | increases expression | 1 |
| Cycloheximide | decreases expression, decreases reaction | 1 |
| Cytarabine | decreases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | decreases methylation, increases abundance | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | affects expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Selenium | decreases expression | 1 |
| Smoke | decreases expression, increases abundance | 1 |
| Tetrachlorodibenzodioxin | decreases reaction, decreases expression | 1 |
| 1-Methyl-3-isobutylxanthine | affects cotreatment, increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Sodium Selenite | increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C768 | ESe026-A | Embryonic stem cell | Male |
| CVCL_SM62 | HAP1 EXT2 (-) 1 | Cancer cell line | Male |
| CVCL_SM63 | HAP1 EXT2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02933333 | PHASE4 | UNKNOWN | G-CSF Alone or Combination With GM-CSF on Prevention and Treatment of Infection in Children With Malignant Tumor |
| NCT00190697 | PHASE4 | COMPLETED | A Study of LY353381 (Arzoxifene) for Patients Who Benefitted From This Drug in Other Oncology Trials and Wished to Continue Treatment |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00727961 | PHASE4 | COMPLETED | A Study to Evaluate Efficacy and Tolerance of Caelyx in Patients With Epithelial Ovarian Cancer. (Study P04072)(COMPLETED) |
| NCT00740116 | PHASE4 | COMPLETED | Tranexamic Acid in Surgery of Advanced Ovarian Cancer |
| NCT00817479 | PHASE4 | COMPLETED | Tumor Gene Expression in Women With Ovarian Cancer |
| NCT01432015 | PHASE4 | COMPLETED | Fosaprepitant Versus Aprepitant in the Prevention of Chemotherapy Induced Nausea and Vomiting |
| NCT01706120 | PHASE4 | UNKNOWN | Study of Clinical and Biological Prognostic Factors in Patients With Ovarian Cancer Receiving Carboplatin +Paclitaxel With Bevacizumab |
| NCT01932125 | PHASE4 | COMPLETED | An Interventional Study of Avastin (Bevacizumab) in Patients With Advanced/Metastatic Epithelial Ovarian Cancer, Fallopian Tube Cancer or Primary Peritoneal Cancer |
| NCT01953107 | PHASE4 | COMPLETED | Oral Iron vs. Placebo in Newly Diagnosed Gynecologic Oncology Patients Who Are Surgical Candidates. |
| NCT02035345 | PHASE4 | TERMINATED | Slowed Carboplatin Infusion for Ovarian Cancer Patients Receiving Carboplatin Re-Treatment |
| NCT02243059 | PHASE4 | WITHDRAWN | Magnetic Resonance Imaging for Lymph Node Staging in Ovarian Cancer |
| NCT03164980 | PHASE4 | TERMINATED | QoL-Comparison Between Trabectedin/PLD and Pt-based Therapy in Patients With Pt-sensitive Recurrent Ovarian Cancer |
| NCT03384511 | PHASE4 | COMPLETED | The Use of 18F-ALF-NOTA-PRGD2 PET/CT Scan to Predict the Efficacy and Adverse Events of Apatinib in Malignancies. |
| NCT03543462 | PHASE4 | COMPLETED | Diaphragmatic Resection And Gynecological Ovarian Neoplasm |
| NCT03752216 | PHASE4 | COMPLETED | NIraparib and Quality of LifE is a Longitudinal Study Evaluating in Real Life the Tolerability of Niraparib. |
| NCT03858166 | PHASE4 | TERMINATED | Efficacy and Safety of PEG-rhG-CSF Secondary Prophylaxis vs. Therapeutic Administration in Patients With Ovarian Cancer |
| NCT04024254 | PHASE4 | COMPLETED | A Study of Serum Folate Levels in Patients Treated With Olaparib |
| NCT04330040 | PHASE4 | COMPLETED | Prospective Multicentre Phase-IV Clinical Trial of Olaparib in Indian Patients With Ovarian and Metastatic Breast Cancer |
| NCT04352439 | PHASE4 | COMPLETED | Aspirin for Prevention of Venous Thromboembolism Among Ovarian Cancer Patients Receiving Neoadjuvant Chemotherapy |
| NCT05187208 | PHASE4 | UNKNOWN | PARP Inhibitor Oral Maintenance in Low-Risk Ovarian Cancer |
| NCT05606692 | PHASE4 | RECRUITING | Influences of Propofol and Sevoflurane Anesthesia in Ovarian Cancer (Anesthetics) |
| NCT05926336 | PHASE4 | RECRUITING | The Effects of Using Different Anesthetics on the Prognosis of Primary Tumors and Its Mechanism of Action |
| NCT06412120 | PHASE4 | RECRUITING | Study Evaluating Safety, Tolerability, and Metabolism of Niraparib |
| NCT06871787 | PHASE4 | NOT_YET_RECRUITING | Near-Infrared Fluorescence Imaging With Indocyanine Green to Evaluate Bowel Anastomoses in Gynecologic Oncology Surgery |
| NCT06887933 | PHASE4 | NOT_YET_RECRUITING | A Trial to Evaluate the Safety of Niraparib Tablets in Adult Female Participants With Advanced or Relapsed Epithelial Ovarian Cancer |
| NCT07469202 | PHASE4 | NOT_YET_RECRUITING | CYTALUX Dose Extension Study |
| NCT03017326 | PHASE3 | ACTIVE_NOT_RECRUITING | Paediatric Hepatic International Tumour Trial |
| NCT03533582 | PHASE3 | ACTIVE_NOT_RECRUITING | Cisplatin and Combination Chemotherapy in Treating Children and Young Adults With Hepatoblastoma or Liver Cancer After Surgery |
| NCT04478292 | PHASE3 | RECRUITING | A Multi-institutional Study for Treatment of Children With Newly Diagnosed Hepatoblastoma Using a Modified PHITT Strategy |
| NCT00001806 | PHASE3 | COMPLETED | Methods in Education for Breast Cancer Genetics |
| NCT00002477 | PHASE3 | UNKNOWN | Adjuvant Chemotherapy Compared With Observation in Treating Patients With Resected Early Stage Ovarian Epithelial Cancer |
| NCT00002568 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without Surgery in Treating Patients With Stage III Ovarian Epithelial Cancer |
| NCT00002641 | PHASE3 | COMPLETED | Surgery With or Without Chemotherapy in Treating Patients With Soft Tissue Sarcoma |
| NCT00002717 | PHASE3 | COMPLETED | Paclitaxel and Cisplatin in Treating Patients With Stage III or Stage IV Ovarian Cancer or Primary Peritoneal Cancer |
| NCT00002764 | PHASE3 | COMPLETED | Surgery With or Without Combination Chemotherapy in Treating Patients With Lung Metastases From Soft Tissue Sarcoma |
| NCT00002819 | PHASE3 | TERMINATED | Chemotherapy With or Without Peripheral Stem Cell Transplantation in Treating Patients With Persistent Ovarian Epithelial Cancer |
| NCT00002894 | PHASE3 | COMPLETED | Platinum-based Chemotherapy With or Without Paclitaxel in Treating Patients With Relapsed Ovarian Cancer |
| NCT00002895 | PHASE3 | COMPLETED | Early Chemotherapy Based on CA 125 Level Alone Compared With Delayed Chemotherapy in Treating Patients With Recurrent Ovarian Epithelial , Fallopian Tube, or Primary Peritoneal Cancer |
| NCT00003120 | PHASE3 | COMPLETED | S9701 Paclitaxel in Treating Patients With Advanced Ovarian, Fallopian Tube, or Primary Peritoneal Cancer in Remission |
Related Atlas pages
- Associated diseases: exostoses, multiple, type 2, seizures-scoliosis-macrocephaly syndrome, hereditary multiple osteochondromas
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): exostoses, multiple, type 1, exostoses, multiple, type 2, hepatoblastoma, hereditary multiple osteochondromas, seizures-scoliosis-macrocephaly syndrome