EYA4
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Summary
EYA4 (EYA transcriptional coactivator and phosphatase 4, HGNC:3522) is a protein-coding gene on chromosome 6q23.2, encoding Protein phosphatase EYA4 (O95677). Tyrosine phosphatase that specifically dephosphorylates ‘Tyr-142’ of histone H2AX (H2AXY142ph). ‘Tyr-142’ phosphorylation of histone H2AX plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a member of the eyes absent (EYA) family of proteins. The encoded protein may act as a transcriptional activator through its protein phosphatase activity, and it may be important for eye development, and for continued function of the mature organ of Corti. Mutations in this gene are associated with postlingual, progressive, autosomal dominant hearing loss at the deafness, autosomal dominant non-syndromic sensorineural 10 locus. The encoded protein is also a putative oncogene that mediates DNA repair, apoptosis, and innate immunity following DNA damage, cellular damage, and viral attack. Defects in this gene are also associated with dilated cardiomyopathy 1J. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 2070 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonsyndromic genetic hearing loss (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 49
- Clinical variants (ClinVar): 1,031 total — 48 pathogenic, 31 likely-pathogenic
- Phenotypes (HPO): 10
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_004100
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3522 |
| Approved symbol | EYA4 |
| Name | EYA transcriptional coactivator and phosphatase 4 |
| Location | 6q23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000112319 |
| Ensembl biotype | protein_coding |
| OMIM | 603550 |
| Entrez | 2070 |
Gene structure
Transcript identifiers
Ensembl transcripts: 42 — 22 protein_coding, 16 protein_coding_CDS_not_defined, 3 retained_intron, 1 nonsense_mediated_decay
ENST00000355167, ENST00000355286, ENST00000421413, ENST00000430974, ENST00000431403, ENST00000441015, ENST00000452339, ENST00000497350, ENST00000525614, ENST00000525849, ENST00000531861, ENST00000531901, ENST00000532518, ENST00000682730, ENST00000683175, ENST00000683325, ENST00000683361, ENST00000683421, ENST00000683422, ENST00000683580, ENST00000683664, ENST00000683674, ENST00000683832, ENST00000684040, ENST00000684097, ENST00000684425, ENST00000684513, ENST00000684773, ENST00000706301, ENST00000883053, ENST00000883054, ENST00000883055, ENST00000883056, ENST00000883057, ENST00000883058, ENST00000883059, ENST00000883060, ENST00000883061, ENST00000883062, ENST00000883063, ENST00000883064, ENST00000943593
RefSeq mRNA: 7 — MANE Select: NM_004100
NM_001301012, NM_001301013, NM_001370458, NM_001370459, NM_004100, NM_172103, NM_172105
CCDS: CCDS43506, CCDS5165, CCDS75521, CCDS75523, CCDS94004, CCDS94005
Canonical transcript exons
ENST00000355286 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000798773 | 133512878 | 133513038 |
| ENSE00000798774 | 133515321 | 133515435 |
| ENSE00001284413 | 133241357 | 133241749 |
| ENSE00001284455 | 133274716 | 133274813 |
| ENSE00001597576 | 133523056 | 133523177 |
| ENSE00001711375 | 133525154 | 133525254 |
| ENSE00001852704 | 133528725 | 133532128 |
| ENSE00003464008 | 133506106 | 133506195 |
| ENSE00003468302 | 133483032 | 133483115 |
| ENSE00003468388 | 133448111 | 133448179 |
| ENSE00003540255 | 133512721 | 133512779 |
| ENSE00003564780 | 133456556 | 133456648 |
| ENSE00003566031 | 133481463 | 133481599 |
| ENSE00003582680 | 133462335 | 133462477 |
| ENSE00003587571 | 133382392 | 133382441 |
| ENSE00003590926 | 133462621 | 133462764 |
| ENSE00003595413 | 133461114 | 133461180 |
| ENSE00003628601 | 133446630 | 133446754 |
| ENSE00003648898 | 133468566 | 133468731 |
| ENSE00003689200 | 133464779 | 133464858 |
Expression profiles
Bgee: expression breadth ubiquitous, 208 present calls, max score 93.60.
FANTOM5 (CAGE): breadth broad, TPM avg 4.7838 / max 188.6831, expressed in 777 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 69842 | 3.3256 | 724 |
| 69841 | 0.5093 | 314 |
| 69843 | 0.3197 | 143 |
| 69844 | 0.3008 | 148 |
| 69840 | 0.1652 | 81 |
| 69839 | 0.1633 | 78 |
Top tissues by expression
279 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| biceps brachii | UBERON:0001507 | 93.60 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 92.82 | gold quality |
| seminal vesicle | UBERON:0000998 | 91.81 | gold quality |
| gastrocnemius | UBERON:0001388 | 91.50 | gold quality |
| muscle of leg | UBERON:0001383 | 90.98 | gold quality |
| calcaneal tendon | UBERON:0003701 | 89.24 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 89.08 | gold quality |
| muscle organ | UBERON:0001630 | 88.93 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 88.80 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 88.51 | gold quality |
| bronchial epithelial cell | CL:0002328 | 87.99 | gold quality |
| heart right ventricle | UBERON:0002080 | 87.27 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 86.35 | gold quality |
| deltoid | UBERON:0001476 | 85.49 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.35 | gold quality |
| tibialis anterior | UBERON:0001385 | 83.17 | silver quality |
| muscle tissue | UBERON:0002385 | 82.55 | gold quality |
| quadriceps femoris | UBERON:0001377 | 81.82 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 81.34 | gold quality |
| vastus lateralis | UBERON:0001379 | 81.32 | gold quality |
| right uterine tube | UBERON:0001302 | 81.08 | gold quality |
| bronchus | UBERON:0002185 | 80.61 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 80.02 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 78.97 | gold quality |
| right atrium auricular region | UBERON:0006631 | 78.81 | gold quality |
| tendon | UBERON:0000043 | 78.72 | gold quality |
| cardiac atrium | UBERON:0002081 | 78.29 | gold quality |
| myocardium | UBERON:0002349 | 77.43 | gold quality |
| cardiac ventricle | UBERON:0002082 | 77.41 | gold quality |
| heart left ventricle | UBERON:0002084 | 77.28 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-2 | yes | 2911.96 |
| E-CURD-119 | yes | 29.43 |
| E-ANND-3 | yes | 6.09 |
| E-MTAB-5061 | no | 3.81 |
| E-GEOD-83139 | no | 2.91 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, RUNX1
miRNA regulators (miRDB)
185 targeting EYA4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Mutation analysis of the EYA4 gene, which maps to 6q22.3, revealed an insertion of 4 bp (1558insTTTG) in affected family members with hereditary hearing impairment (PMID:12477971)
- Mutation in the transcriptional coactivator EYA4 causes dilated cardiomyopathy and sensorineural hearing loss (PMID:15735644)
- Results show the first definitive cardiac evaluations of DFNA10 hearing loss to support a correlation of EYA4 mutation with/without the of dilated cardiomyopathy, and will facilitate the counseling of patients with these phenotypes and EYA4 mutations. (PMID:17567890)
- Study is the first report of a point mutation in EYA4 that is hypothesized to lead to aberrant pre-mRNA splicing and human disease. (PMID:17568404)
- Mice lacking the orthologous gene have severe hearing deficits, suggesting that some human otitis media susceptibility reflects underlying genetic predisposition in genes such as this one. (PMID:18219393)
- Findings identify a role of EYA4 and possibly interacting SIX and DACH proteins in MPNSTs and suggest the EYA4 pathway as a rational therapeutic target. (PMID:19901965)
- EYA4 and hTERT mRNA expression increased with the severity of esophageal pathological changes and may be useful for identifying high-risk endoscopy candidates or for monitoring changes in premalignant esophageal lesions. (PMID:19939248)
- Serum methylation levels of TAC1, SEPT9, and EYA4 were significant discriminants between stage I colorectal cancer and healthy controls. (PMID:23862763)
- High methylation of the EYA4 gene is associated with ulcerative colitis with colorectal cancer. (PMID:23867875)
- Work shows a clear role for EYA4 as a putative tumor suppressor genes in non-small-cell lung cancer. (PMID:24096489)
- Low EYA4 expression is associated with hepatocellular carcinoma. (PMID:24306662)
- Results provide molecular and clinical information in order to gain improved understanding of the pathogenesis of DFNA10 protein EYA4 mutations and the genotypephenotype correlations of DFNA10 hearing loss. (PMID:25242383)
- EYA4 methylation may be identified in stool samples. (PMID:25620232)
- Autosomal dominant hearing impairment due to a novel EYA4 frameshift mutation:a novel heterozygous frame-shift mutation (c.579_580insTACC, p.(Asp194Tyrfs*52)) in EYA4 was identified that truncates the so-called variable region of the protein. (PMID:25681523)
- EYA4 mutations are associated with autosomal dominant non-syndromic hearing loss. (PMID:25781927)
- A novel missense mutation c.1643C>G (p.T548R) in EYA4 may cause autosomal dominant non-syndromic hearing impairment. (PMID:25809937)
- Exome Sequencing Identifies a Mutation in EYA4 as a Novel Cause of Autosomal Dominant Non-Syndromic Hearing Loss (PMID:25961296)
- analysis of an EYA4 mutation causing hearing loss in a Chinese DFNA family (PMID:25963406)
- The identification of a novel EYA4 truncation mutation associated with DFNA10, rather than syndromic hearing loss, supports a previously reported genotype-phenotype correlation in this gene. (PMID:26015337)
- In a Dutch family with c.464del EYA4 mutation, hearing impairment begins as a mid-frequency hearing impairment in childhood and develops into a high-frequency, moderate hearing impairment later in life. (PMID:26331839)
- Genetic variations in the EYA4, GRHL2 and DFNA5 genes and their interactions with occupational noise exposure may play an important role in the incidence of noise-induced hearing loss (NIHL). (PMID:26400775)
- results implicate Eya4/Six1 regulates normal cardiac function via p27/casein kinase-2alpha/histone deacetylase 2 and indicate that mutations within this transcriptional complex and signaling cascade lead to the development of cardiomyopathy. (PMID:26499333)
- Low expression of EYA4 is associated with oral cancer. (PMID:27015871)
- Up to now, merely 7 loci have been linked to mid-frequency hearing loss. Only four genetic mid-frequency deafness genes, namely, DFNA10 (EYA4), DFNA8/12 (TECTA), DFNA13 (COL11A2), DFNA44 (CCDC50), have been reported to date. [review] (PMID:27142990)
- study identified EYA4 gene as targets for AML1-ETO and indicated it as a novel tumor suppressor gene. In addition, we provided evidence that EYA4 gene might be a novel therapeutic target and a potential candidate for treating AML1-ETO+ t (8;21) AML. (PMID:27231175)
- EYA4 functions as tumor suppressor gene in pancreatic ductal adenocarcinoma via repressing beta-catenin/ID2 activation, and was an independent prognostic factor in PDAC. (PMID:27378242)
- Loss of EYA4 expression is associated with intrahepatic cholangiocarcinoma. (PMID:27469137)
- Locus polymorphism of rs3813346 was associated with the risk of developing noise-induced hearing loss in the dominance model, the codominance model and the addictive model. Generalized multiple dimensionality reduction indicated that the combined interaction of the 2 loci-rs3813346 and rs9493627-significantly affected the incidence of noise-induced hearing loss. (PMID:27613755)
- We discovered two genome-wide significant SNPs. The first was novel and near ISG20. The second was in TRIOBP, a gene previously associated with prelingual nonsyndromic hearing loss. Motivated by our TRIOBP results, we also looked at exons in known hearing loss genes, and identified two additional SNPs, rs2877561 in ILDR1 and rs9493672 in EYA4 (at a significance threshold adjusted for number of SNPs in those regions). (PMID:27764096)
- EYA4 hypermethylation is associated with colorectal cancer. (PMID:28351398)
- identified novel EYA4 mutation can be considered responsible of the hearing loss observed in the proband and her father, while a dual molecular diagnosis was reached in the relatives co-segregating the EYA4 and the PAX3 mutations (PMID:29287889)
- Although the clinical patient outcome of our 38 Colorectal Cancer patients was not associated with EYA4 promoter hypermethylation, the high frequency of this methylation and its high sensitivity and specificity to neoplastic cells may qualify EYA4 promoter methylation as a potential candidate screening marker in Iranian population and may help to improve early detection of CRC. (PMID:29436791)
- Eyes absent homolog 4 (Drosophila) protein (EYA4) is frequently hypermethylated in esophageal squamous cell carcinoma (ESCC) and may function as a tumor suppressor gene in the development of ESCC. (PMID:29660222)
- Findings identified eyes absent homolog 4 (EYA4) as a tumor suppressor that disrupts aberrant activation of the nuclear factor kappa B (NF-kappaB)/RAP1 protein signaling pathway and thus orchestrates a physiological impediment to hepatocellular carcinoma (HCC) growth and invasion. (PMID:29764501)
- Overexpression of EYA4 enhanced glioma cell proliferation, and EYA4 suppressed the expression of p27Kip1 directly in these cells. (PMID:30231237)
- the novel missense mutation c.1855T>G (p.W619G) in EYA4 causing autosomal dominant non-syndromic hearing impairment in the selected Chinese family, was identified. (PMID:30942159)
- EYA4 is a novel tumour suppressor in HCC and a new prognostic biomarker and therapeutic target in HCC. (PMID:30957411)
- Result show that EYA4 expression is regulated by miR626 which targets its 3’UTR in bladder cancer cells. (PMID:31101108)
- Study reports that EYA4 suppressed hepatocellular carcinoma (HCC) tumor cell growth by reducing the nuclear translocation of beta-catenin by dephosphorylation at Ser552, thereby suppressing the transcription of MYCBP which was induced by beta-catenin/LEF1 binding to the promoter of MYCBP. (PMID:31385398)
- Prevalence and clinical features of hearing loss caused by EYA4 variants. (PMID:32107406)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eya4 | ENSDARG00000012397 |
| mus_musculus | Eya4 | ENSMUSG00000010461 |
| rattus_norvegicus | Eya4 | ENSRNOG00000016627 |
| drosophila_melanogaster | eya | FBGN0000320 |
| caenorhabditis_elegans | eya-1 | WBGENE00001377 |
Paralogs (3): EYA2 (ENSG00000064655), EYA1 (ENSG00000104313), EYA3 (ENSG00000158161)
Protein
Protein identifiers
Protein phosphatase EYA4 — O95677 (reviewed: O95677)
Alternative names: Eyes absent homolog 4
All UniProt accessions (9): O95677, A0A0S2Z3Q2, A0A0S2Z3V9, A0A804HHY3, A0A804HL00, A0A8C8KDW0, E7ESD5, E9PLN6, F2Z2Y1
UniProt curated annotations — full annotation on UniProt →
Function. Tyrosine phosphatase that specifically dephosphorylates ‘Tyr-142’ of histone H2AX (H2AXY142ph). ‘Tyr-142’ phosphorylation of histone H2AX plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. Promotes efficient DNA repair by dephosphorylating H2AX, promoting the recruitment of DNA repair complexes containing MDC1. Its function as histone phosphatase probably explains its role in transcription regulation during organogenesis. May be involved in development of the eye.
Subunit / interactions. Interacts with SIX3; translocates EYA4 from the cytoplasm to the nucleus and promotes activation of their target genes.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Highly expressed in heart and skeletal muscle.
Disease relevance. Deafness, autosomal dominant, 10 (DFNA10) [MIM:601316] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, dilated, 1J (CMD1J) [MIM:605362] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. CMD1J is characterized by the association of sensorineural hearing loss and dilated cardiomyopathy in the absence of other anomalies. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 Mg(2+) ion per subunit.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the HAD-like hydrolase superfamily. EYA family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O95677-1 | 1 | yes |
| O95677-2 | 2 | |
| O95677-3 | 3 | |
| O95677-4 | 4 | |
| O95677-5 | 5 |
RefSeq proteins (7): NP_001287941, NP_001287942, NP_001357387, NP_001357388, NP_004091, NP_742101, NP_742103 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006545 | EYA_dom | Domain |
| IPR028472 | EYA | Family |
| IPR038102 | EYA_dom_sf | Homologous_superfamily |
| IPR042577 | EYA_dom_metazoan | Domain |
Pfam: PF00702
Catalyzed reactions (Rhea), 1 shown:
- O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate (RHEA:10684)
UniProt features (29 total): splice variant 6, sequence variant 6, region of interest 3, binding site 3, compositionally biased region 3, modified residue 2, cross-link 2, active site 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O95677-F1 | 63.79 | 0.41 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 375 (nucleophile); 377 (proton donor)
Ligand- & substrate-binding residues (3): 377; 603; 375
Post-translational modifications (4): 1, 361, 14, 52
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5693565 | Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks |
MSigDB gene sets: 242 (showing top):
BENPORATH_ES_WITH_H3K27ME3, GOBP_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, CERVERA_SDHB_TARGETS_1_DN, CHANDRAN_METASTASIS_DN, GOBP_REGULATION_OF_DNA_REPAIR, GTGCCTT_MIR506, GOBP_NEGATIVE_REGULATION_OF_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, GOBP_APOPTOTIC_SIGNALING_PATHWAY, GOBP_SENSORY_PERCEPTION_OF_LIGHT_STIMULUS, GOBP_REGULATION_OF_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, GOBP_REGULATION_OF_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_IN_ABSENCE_OF_LIGAND, TGTGTGA_MIR377, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, GOBP_SIGNAL_TRANSDUCTION_IN_ABSENCE_OF_LIGAND, ZIC1_01
GO Biological Process (10): DNA repair (GO:0006281), chromatin organization (GO:0006325), visual perception (GO:0007601), anatomical structure morphogenesis (GO:0009653), cell differentiation (GO:0030154), positive regulation of DNA repair (GO:0045739), inner ear development (GO:0048839), negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (GO:2001240), DNA damage response (GO:0006974), multicellular organism development (GO:0007275)
GO Molecular Function (5): protein tyrosine phosphatase activity (GO:0004725), metal ion binding (GO:0046872), phosphoprotein phosphatase activity (GO:0004721), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (2): nucleus (GO:0005634), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| DNA Double Strand Break Response | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| anatomical structure development | 3 |
| DNA metabolic process | 1 |
| DNA damage response | 1 |
| cellular component organization | 1 |
| sensory perception of light stimulus | 1 |
| developmental process | 1 |
| cellular developmental process | 1 |
| DNA repair | 1 |
| regulation of DNA repair | 1 |
| positive regulation of response to stimulus | 1 |
| positive regulation of DNA metabolic process | 1 |
| ear development | 1 |
| extrinsic apoptotic signaling pathway in absence of ligand | 1 |
| negative regulation of signal transduction in absence of ligand | 1 |
| negative regulation of extrinsic apoptotic signaling pathway | 1 |
| regulation of extrinsic apoptotic signaling pathway in absence of ligand | 1 |
| cellular response to stress | 1 |
| multicellular organismal process | 1 |
| phosphoprotein phosphatase activity | 1 |
| cation binding | 1 |
| phosphatase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1382 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EYA4 | TCF21 | O43680 | 806 |
| EYA4 | NLRX1 | Q86UT6 | 789 |
| EYA4 | RBM20 | Q5T481 | 739 |
| EYA4 | ABCC9 | O60706 | 703 |
| EYA4 | TMPO | P08918 | 688 |
| EYA4 | NEXN | Q0ZGT2 | 655 |
| EYA4 | KCNQ4 | P56696 | 646 |
| EYA4 | FKTN | O75072 | 622 |
| EYA4 | SIX4 | Q9UIU6 | 609 |
| EYA4 | MYBPC3 | Q14896 | 604 |
| EYA4 | DSG2 | Q14126 | 602 |
| EYA4 | SIX1 | Q15475 | 602 |
| EYA4 | CSRP3 | P50461 | 592 |
| EYA4 | TCAP | O15273 | 589 |
| EYA4 | SGCD | Q92629 | 585 |
| EYA4 | SGK1 | O00141 | 585 |
IntAct
24 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SIX2 | EYA2 | psi-mi:“MI:0914”(association) | 0.530 |
| PFDN2 | CDC40 | psi-mi:“MI:0914”(association) | 0.530 |
| EYA4 | AATK | psi-mi:“MI:0915”(physical association) | 0.370 |
| EYA4 | ERBB3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| FOXJ2 | TCERG1 | psi-mi:“MI:0914”(association) | 0.350 |
| PIP | RBM47 | psi-mi:“MI:0914”(association) | 0.350 |
| SIX5 | PPM1G | psi-mi:“MI:0914”(association) | 0.350 |
| SIX1 | EYA4 | psi-mi:“MI:0914”(association) | 0.350 |
| GATA2 | BCL9 | psi-mi:“MI:2364”(proximity) | 0.270 |
| HNF1B | BCL9 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SOX15 | SMCHD1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SP7 | IGF2BP3 | psi-mi:“MI:2364”(proximity) | 0.270 |
| TLX1 | BCL9 | psi-mi:“MI:2364”(proximity) | 0.270 |
| EYA4 | PPIP5K2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | SEC24B | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | UBE2D2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | PLEC | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | QSER1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | AAK1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | CCDC88A | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | LUZP1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | URGCP | psi-mi:“MI:0915”(physical association) | 0.000 |
| EYA4 | DVL3 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (273): EYA4 (Affinity Capture-MS), EYA4 (Affinity Capture-MS), DCTPP1 (Affinity Capture-MS), ERC1 (Affinity Capture-MS), RPA2 (Affinity Capture-MS), RPA3 (Affinity Capture-MS), SIX2 (Affinity Capture-MS), SIX4 (Affinity Capture-MS), SUPT5H (Affinity Capture-MS), EYA4 (Affinity Capture-MS), DCTPP1 (Affinity Capture-MS), SCO1 (Affinity Capture-MS), EOGT (Affinity Capture-MS), SLC25A15 (Affinity Capture-MS), SCO2 (Affinity Capture-MS)
ESM2 similar proteins: A0A1P8AS03, A3LX75, A5DDB7, D5MCN2, F4IUY8, F4K1Z0, G4NID8, M2TGT8, M2U3Z7, O13987, O17670, O60167, O61708, O74345, O74412, O95677, P25644, P34643, P53297, P97767, Q05672, Q07998, Q08400, Q09750, Q09801, Q10655, Q10667, Q18273, Q20374, Q20870, Q2L4W6, Q3MK94, Q3S405, Q61X54, Q6E3D2, Q6E3D4, Q6FLG1, Q6FSQ6, Q75BK1, Q7ZT82
Diamond homologs: O00167, O08575, O82162, O95677, P97480, P97767, Q05201, Q58DB6, Q99502, Q99504, Q9YH98, Q9YH99, Q9YHA0, Q9YHA1, Q9Z191, O17670
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1031 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 48 |
| Likely pathogenic | 31 |
| Uncertain significance | 533 |
| Likely benign | 301 |
| Benign | 52 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1185054 | NM_004100.5(EYA4):c.964C>T (p.Gln322Ter) | Pathogenic |
| 1185589 | NM_004100.5(EYA4):c.580+2T>C | Pathogenic |
| 1185629 | NM_004100.5(EYA4):c.804+2T>A | Pathogenic |
| 1185652 | NM_004100.5(EYA4):c.804+2del | Pathogenic |
| 1210331 | NM_004100.5(EYA4):c.1154C>A (p.Ser385Ter) | Pathogenic |
| 1322847 | NM_004100.5(EYA4):c.1026_1027dup (p.Thr343fs) | Pathogenic |
| 1322854 | NM_004100.5(EYA4):c.1048_1049dup (p.Arg352fs) | Pathogenic |
| 1380128 | NM_004100.5(EYA4):c.832C>T (p.Gln278Ter) | Pathogenic |
| 1419206 | NM_004100.5(EYA4):c.67C>T (p.Gln23Ter) | Pathogenic |
| 1808956 | GRCh37/hg19 6q23.2(chr6:133522860-134541311)x1 | Pathogenic |
| 1916328 | NM_004100.5(EYA4):c.223_224del (p.Val75fs) | Pathogenic |
| 1965243 | NM_004100.5(EYA4):c.242G>A (p.Trp81Ter) | Pathogenic |
| 2112319 | NM_004100.5(EYA4):c.1574G>A (p.Trp525Ter) | Pathogenic |
| 2126137 | NM_004100.5(EYA4):c.1472del (p.Leu491fs) | Pathogenic |
| 236032 | NM_004100.5(EYA4):c.441del (p.Tyr148fs) | Pathogenic |
| 2425022 | NC_000006.11:g.(?133782232)(133783922_?)del | Pathogenic |
| 2445629 | NM_004100.5(EYA4):c.992dup (p.Ser331fs) | Pathogenic |
| 2446670 | NM_004100.5(EYA4):c.988C>T (p.Gln330Ter) | Pathogenic |
| 2743050 | NM_004100.5(EYA4):c.211G>T (p.Glu71Ter) | Pathogenic |
| 2783559 | NM_004100.5(EYA4):c.579C>G (p.Tyr193Ter) | Pathogenic |
| 2833829 | NM_004100.5(EYA4):c.1776dup (p.Gly593fs) | Pathogenic |
| 3239625 | GRCh37/hg19 6q23.2(chr6:133782252-133804253)x1 | Pathogenic |
| 3246004 | NC_000006.11:g.(?133595919)(133595971_?)del | Pathogenic |
| 3511153 | NM_004100.5(EYA4):c.279del (p.Met93fs) | Pathogenic |
| 3630137 | NM_004100.5(EYA4):c.222del (p.Val75fs) | Pathogenic |
| 3655361 | NM_004100.5(EYA4):c.13C>T (p.Gln5Ter) | Pathogenic |
| 3657058 | NM_004100.5(EYA4):c.646C>T (p.Gln216Ter) | Pathogenic |
| 3668390 | NM_004100.5(EYA4):c.337_350del (p.Thr112_Gly113insTer) | Pathogenic |
| 3685913 | NM_004100.5(EYA4):c.616_617del (p.Ser206fs) | Pathogenic |
| 3772603 | NM_004100.5(EYA4):c.1269dup (p.Asn424Ter) | Pathogenic |
SpliceAI
4787 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:133241746:CGAGG:C | donor_loss | 1.0000 |
| 6:133241747:GAG:G | donor_gain | 1.0000 |
| 6:133241747:GAGGT:G | donor_loss | 1.0000 |
| 6:133241748:AGG:A | donor_loss | 1.0000 |
| 6:133241749:GGTG:G | donor_loss | 1.0000 |
| 6:133241750:G:C | donor_loss | 1.0000 |
| 6:133241750:G:GG | donor_gain | 1.0000 |
| 6:133274702:T:G | acceptor_gain | 1.0000 |
| 6:133274708:T:A | acceptor_gain | 1.0000 |
| 6:133274711:TTTA:T | acceptor_loss | 1.0000 |
| 6:133274713:TA:T | acceptor_loss | 1.0000 |
| 6:133274714:A:AG | acceptor_gain | 1.0000 |
| 6:133274715:G:GA | acceptor_gain | 1.0000 |
| 6:133274715:G:T | acceptor_loss | 1.0000 |
| 6:133274715:GAT:G | acceptor_gain | 1.0000 |
| 6:133274715:GATA:G | acceptor_gain | 1.0000 |
| 6:133274809:AATCA:A | donor_gain | 1.0000 |
| 6:133274810:ATCA:A | donor_gain | 1.0000 |
| 6:133274811:TCA:T | donor_gain | 1.0000 |
| 6:133274813:AGTAA:A | donor_loss | 1.0000 |
| 6:133274814:G:GG | donor_gain | 1.0000 |
| 6:133274815:TA:T | donor_loss | 1.0000 |
| 6:133274816:AAGTC:A | donor_loss | 1.0000 |
| 6:133398644:T:G | acceptor_gain | 1.0000 |
| 6:133446609:T:TA | acceptor_gain | 1.0000 |
| 6:133446612:T:A | acceptor_gain | 1.0000 |
| 6:133446619:T:A | acceptor_gain | 1.0000 |
| 6:133446751:GGAG:G | donor_gain | 1.0000 |
| 6:133446752:GAGG:G | donor_gain | 1.0000 |
| 6:133446752:GAGGT:G | donor_loss | 1.0000 |
AlphaMissense
4168 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:133483039:T:C | F372S | 1.000 |
| 6:133483042:T:A | V373D | 1.000 |
| 6:133483044:T:A | W374R | 1.000 |
| 6:133483044:T:C | W374R | 1.000 |
| 6:133483045:G:C | W374S | 1.000 |
| 6:133483046:G:C | W374C | 1.000 |
| 6:133483046:G:T | W374C | 1.000 |
| 6:133483048:A:C | D375A | 1.000 |
| 6:133483053:G:C | D377H | 1.000 |
| 6:133483054:A:C | D377A | 1.000 |
| 6:133483054:A:T | D377V | 1.000 |
| 6:133483057:A:T | E378V | 1.000 |
| 6:133483060:C:T | T379I | 1.000 |
| 6:133483071:T:C | F383L | 1.000 |
| 6:133483073:T:A | F383L | 1.000 |
| 6:133483073:T:G | F383L | 1.000 |
| 6:133483074:C:G | H384D | 1.000 |
| 6:133483081:T:C | L386P | 1.000 |
| 6:133483084:T:A | L387H | 1.000 |
| 6:133483084:T:C | L387P | 1.000 |
| 6:133506130:G:A | G406R | 1.000 |
| 6:133506130:G:C | G406R | 1.000 |
| 6:133506131:G:A | G406E | 1.000 |
| 6:133506134:T:C | L407P | 1.000 |
| 6:133506143:A:T | E410V | 1.000 |
| 6:133506144:A:C | E410D | 1.000 |
| 6:133506144:A:T | E410D | 1.000 |
| 6:133506154:T:C | F414L | 1.000 |
| 6:133506155:T:C | F414S | 1.000 |
| 6:133506155:T:G | F414C | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002767 (6:133490882 T>C), RS1000023310 (6:133381327 T>G), RS1000027181 (6:133278872 A>G), RS1000031267 (6:133318038 G>A,C), RS1000048055 (6:133333961 A>C), RS1000051989 (6:133318060 C>T), RS1000059224 (6:133260033 A>T), RS1000064526 (6:133405498 A>T), RS1000064572 (6:133299637 G>A,T), RS1000067185 (6:133422850 C>T), RS1000079360 (6:133364644 G>A), RS1000094068 (6:133374729 G>A), RS1000096522 (6:133405799 T>A,C), RS1000098998 (6:133445577 CTTTTTTT>C,CTTT,CTTTT,CTTTTT,CTTTTTT,CTTTTTTTT,CTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTTATATTTTCTTTTTTTTTTTTTTTAGTTTTTTTTTCTAGTTTCCTTTCCTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTT), RS1000110115 (6:133511838 A>G)
Disease associations
OMIM: gene MIM:603550 | disease phenotypes: MIM:605362, MIM:601316, MIM:192600, MIM:115200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Definitive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss 10 | Definitive | Autosomal dominant |
| dilated cardiomyopathy 1J | Moderate | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Definitive | AD |
| dilated cardiomyopathy 1J | Limited | AD |
Mondo (12): dilated cardiomyopathy 1J (MONDO:0011541), autosomal dominant nonsyndromic hearing loss 10 (MONDO:0011031), hearing loss disorder (MONDO:0005365), nonsyndromic genetic hearing loss (MONDO:0019497), dilated cardiomyopathy (MONDO:0005021), hypertrophic cardiomyopathy (MONDO:0005045), familial hypertrophic cardiomyopathy (MONDO:0024573), myoepithelial tumor (MONDO:0002380), congestive heart failure (MONDO:0005009), ventricular tachycardia (MONDO:0005477), familial dilated cardiomyopathy (MONDO:0016333), autosomal dominant nonsyndromic hearing loss (MONDO:0019587)
Orphanet (9): Sensorineural deafness with dilated cardiomyopathy (Orphanet:217622), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Rare non-syndromic genetic deafness (Orphanet:87884), Dilated cardiomyopathy (Orphanet:217604), Rare genetic deafness (Orphanet:96210), Rare hypertrophic cardiomyopathy (Orphanet:217569), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Familial dilated cardiomyopathy (Orphanet:217607), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155)
HPO phenotypes
10 total (11 of 10 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000365 | Hearing impairment |
| HP:0000403 | Recurrent otitis media |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0001635 | Congestive heart failure |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001699 | Sudden death |
| HP:0005162 | Abnormal left ventricular function |
| HP:0030872 | Abnormal cardiac ventricular function |
| HP:0001639 | Hypertrophic cardiomyopathy |
GWAS associations
49 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000189_13 | Protein quantitative trait loci | 1.000000e-06 |
| GCST001520_10 | Response to angiotensin II receptor blocker therapy | 6.000000e-06 |
| GCST001525_40 | Visceral fat | 9.000000e-06 |
| GCST002493_5 | Bone mineral density (paediatric, skull) | 2.000000e-12 |
| GCST002493_6 | Bone mineral density (paediatric, skull) | 8.000000e-17 |
| GCST004136_25 | Methadone dose in opioid dependence | 6.000000e-06 |
| GCST004292_20 | Glomerular filtration rate (creatinine) | 4.000000e-09 |
| GCST004505_40 | Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour) | 1.000000e-07 |
| GCST004508_42 | Waist-to-hip ratio adjusted for BMI in non-smokers | 2.000000e-09 |
| GCST006061_215 | Atrial fibrillation | 2.000000e-08 |
| GCST006288_135 | Heel bone mineral density | 2.000000e-32 |
| GCST006288_136 | Heel bone mineral density | 2.000000e-14 |
| GCST006288_464 | Heel bone mineral density | 2.000000e-36 |
| GCST006288_465 | Heel bone mineral density | 2.000000e-12 |
| GCST006288_559 | Heel bone mineral density | 9.000000e-67 |
| GCST006288_560 | Heel bone mineral density | 2.000000e-24 |
| GCST006979_394 | Heel bone mineral density | 1.000000e-112 |
| GCST006979_395 | Heel bone mineral density | 3.000000e-13 |
| GCST006979_396 | Heel bone mineral density | 8.000000e-33 |
| GCST007876_89 | Estimated glomerular filtration rate | 7.000000e-10 |
| GCST007989_9 | Facial morphology traits (63 three-dimensional facial segments) | 6.000000e-12 |
| GCST008058_79 | Estimated glomerular filtration rate | 5.000000e-23 |
| GCST008059_72 | Estimated glomerular filtration rate | 8.000000e-22 |
| GCST008156_26 | Hip circumference adjusted for BMI | 4.000000e-07 |
| GCST008162_107 | Hip circumference | 7.000000e-06 |
| GCST009028_4 | Adverse response to drug | 8.000000e-07 |
| GCST010173_134 | Triglyceride levels | 2.000000e-09 |
| GCST010244_326 | Triglyceride levels | 2.000000e-14 |
| GCST011457_18 | Asthma with severe exacerbations | 6.000000e-07 |
| GCST012125_6 | Chronic pain | 3.000000e-06 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004815 | alpha macroglobulin measurement |
| EFO:0007907 | methadone dose measurement |
| EFO:0004318 | smoking behavior |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0009270 | heel bone mineral density |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0009658 | adverse effect |
| EFO:0004530 | triglyceride measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0004833 | neutrophil count |
MeSH disease descriptors (10)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D009208 | Myoepithelioma | C04.557.435.585 |
| D017180 | Tachycardia, Ventricular | C14.280.067.845.940; C14.280.123.875.940; C23.550.073.845.940 |
| C565337 | Cardiomyopathy, Dilated, 1J (supp.) | |
| C563354 | Deafness, Autosomal Dominant 10 (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) | |
| C536231 | familial dilated cardiomyopathy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs17301249 | EYA4 | 0.00 | 0 |
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| sodium arsenite | affects methylation, increases expression, affects acetylation | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Tretinoin | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| terbufos | increases methylation | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| monomethylarsonous acid | affects acetylation, affects methylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Carbamazepine | affects expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E4DX | KEIUi004-A | Induced pluripotent stem cell | Female |
| CVCL_E4DY | KEIUi005-A | Induced pluripotent stem cell | Male |
| CVCL_E4DZ | KEIUi006-A | Induced pluripotent stem cell | Female |
| CVCL_E4E0 | KEIUi007-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
| NCT05786378 | PHASE2/PHASE3 | UNKNOWN | Assessment of The Efficacy of Intratympanic Platelet Rich Plasma for Treatment of Sensorineural Hearing Loss. |
| NCT01108601 | PHASE1/PHASE2 | UNKNOWN | Transtympanic Ringer’s Lactate for the Prevention of Cisplatin Ototoxicity |
| NCT01621256 | PHASE1/PHASE2 | COMPLETED | Efficacy, Safety, and Tolerability of Ancrod in Patients With Sudden Hearing Loss |
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Related Atlas pages
- Associated diseases: nonsyndromic genetic hearing loss, autosomal dominant nonsyndromic hearing loss 10, dilated cardiomyopathy 1J, autosomal dominant nonsyndromic hearing loss
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss, autosomal dominant nonsyndromic hearing loss 10, congestive heart failure, dilated cardiomyopathy 1J, familial dilated cardiomyopathy, familial hypertrophic cardiomyopathy, myoepithelial tumor, nonsyndromic genetic hearing loss, presbycusis, ventricular tachycardia