F7
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Summary
F7 (coagulation factor VII, HGNC:3544) is a protein-coding gene on chromosome 13q34, encoding Coagulation factor VII (P08709). Initiates the extrinsic pathway of blood coagulation.
This gene encodes coagulation factor VII which is a vitamin K-dependent factor essential for hemostasis. This factor circulates in the blood in a zymogen form, and is converted to an active form by either factor IXa, factor Xa, factor XIIa, or thrombin by minor proteolysis. Upon activation of the factor VII, a heavy chain containing a catalytic domain and a light chain containing 2 EGF-like domains are generated, and two chains are held together by a disulfide bond. In the presence of factor III and calcium ions, the activated factor then further activates the coagulation cascade by converting factor IX to factor IXa and/or factor X to factor Xa. Defects in this gene can cause coagulopathy. Alternative splicing results in multiple transcript variants encoding different isoforms that may undergo similar proteolytic processing to generate mature polypeptides.
Source: NCBI Gene 2155 — RefSeq curated summary.
At a glance
- Gene–disease (curated): factor VII deficiency (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 14
- Clinical variants (ClinVar): 359 total — 25 pathogenic, 46 likely-pathogenic (top 9% of genes corpus-wide)
- GTEx eGene: eQTL in 36 tissues, sQTL in 2 (q < 0.05)
- Phenotypes (HPO): 18
- Drug target: yes — 6 curated mechanism-of-action drugs; 8 molecules with ChEMBL bioactivity
- Approved drugs (ChEMBL mechanism of action): 3 — Coagulation Factor Vii Human, Eptacog Alfa (Activated), Eptacog Beta (Activated)
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.11 (unconstrained)
- MANE Select transcript:
NM_019616
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3544 |
| Approved symbol | F7 |
| Name | coagulation factor VII |
| Location | 13q34 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000057593 |
| Ensembl biotype | protein_coding |
| OMIM | 613878 |
| Entrez | 2155 |
Gene structure
Transcript identifiers
Ensembl transcripts: 37 — 26 protein_coding, 9 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron
MANE Select: ENST00000346342 · MANE Plus Clinical: ENST00000375581
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 1, TSL 4: 1, TSL 5: 2
ENST00000346342, ENST00000375581, ENST00000444337, ENST00000473085, ENST00000479674, ENST00000541084, ENST00000891239, ENST00000891240, ENST00000891241, ENST00000891242, ENST00000891243, ENST00000891244, ENST00000891245, ENST00000891246, ENST00000891247, ENST00000891248, ENST00000891249, ENST00000891250, ENST00000891251, ENST00000891252, ENST00000891253, ENST00000891254, ENST00000891255, ENST00000891256, ENST00000891257, ENST00000891258, ENST00001003816, ENST00001003818, ENST00001003819, ENST00001003820, ENST00001003821, ENST00001119064, ENST00001119065, ENST00001119066, ENST00001119067, ENST00001132033, ENST00001132034
RefSeq mRNA: 3 — MANE Select: NM_019616
NM_000131, NM_001267554, NM_019616
CCDS: CCDS73602, CCDS9528, CCDS9529
Canonical transcript exons
ENST00000346342 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000687189 | 113117473 | 113117596 |
| ENSE00000862517 | 113105791 | 113105905 |
| ENSE00001134999 | 113116766 | 113116875 |
| ENSE00001135032 | 113110690 | 113110850 |
| ENSE00003582424 | 113115660 | 113115800 |
| ENSE00003608396 | 113113847 | 113113960 |
| ENSE00003655495 | 113113752 | 113113776 |
| ENSE00004779919 | 113118413 | 113120685 |
Expression profiles
Bgee: expression breadth ubiquitous, 156 present calls, max score 97.18.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2490 / max 66.5832, expressed in 41 samples.
Highest expression (Bgee): lobe of liver, liver, buccal mucosa cell, tendon of biceps brachii, male germ line stem cell (sensu Vertebrata) in testis.
Genetic regulation across tissues (GTEx eQTL / sQTL)
F7 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 36 tissues and its splicing (sQTL) in 2 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 38 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Skin Sun Exposed Lower leg | eqtl | 1.0e-34 | -0.60 | 13:113110921:G:A |
| Skin Not Sun Exposed Suprapubic | eqtl | 1.6e-26 | -0.73 | 13:113110921:G:A |
| Brain Frontal Cortex BA9 | eqtl | 1.5e-21 | -0.54 | 13:113098517:A:G |
| Heart Atrial Appendage | eqtl | 5.0e-20 | -0.94 | 13:113110921:G:A |
| Esophagus Muscularis | eqtl | 3.9e-17 | -0.70 | 13:113110921:G:A |
| Adipose Subcutaneous | eqtl | 5.3e-16 | -0.53 | 13:113110921:G:A |
| Esophagus Gastroesophageal Junction | eqtl | 6.1e-14 | -0.80 | 13:113110921:G:A |
| Thyroid | eqtl | 7.9e-14 | -0.60 | 13:113110921:G:A |
| Cells Cultured fibroblasts | eqtl | 2.9e-12 | -0.47 | 13:113110921:G:A |
| Esophagus Mucosa | eqtl | 5.1e-12 | -0.59 | 13:113110921:G:A |
| Colon Transverse | eqtl | 5.3e-12 | -0.69 | 13:113110921:G:A |
| Brain Anterior cingulate cortex BA24 | eqtl | 8.1e-11 | -0.55 | 13:113110921:G:A |
| Brain Cortex | eqtl | 9.1e-11 | -0.47 | 13:113110921:G:A |
| Brain Caudate basal ganglia | eqtl | 3.8e-10 | -0.52 | 13:113099001:G:A |
| Brain Cerebellum | eqtl | 7.4e-09 | +1.34 | 13:113098259:G:A |
| Stomach | eqtl | 8.0e-09 | -0.56 | 13:113105720:T:C |
| Adipose Visceral Omentum | eqtl | 1.0e-08 | -0.55 | 13:113110921:G:A |
| Breast Mammary Tissue | eqtl | 1.4e-08 | -0.50 | 13:113110921:G:A |
| Liver | eqtl | 2.2e-08 | +0.35 | 13:113103654:G:A |
| Liver | sqtl | 3.5e-08 | -0.74 | 13:113110081:G:A |
FANTOM5 promoters
1 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 136197 | 0.2490 | 41 |
Top tissues by expression
showing 100 of 266 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 97.18 | gold quality |
| liver | UBERON:0002107 | 95.37 | gold quality |
| buccal mucosa cell | CL:0002336 | 94.87 | silver quality |
| tendon of biceps brachii | UBERON:0008188 | 94.30 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.21 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 79.05 | gold quality |
| superficial temporal artery | UBERON:0001614 | 78.39 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 77.43 | gold quality |
| medial globus pallidus | UBERON:0002477 | 76.52 | silver quality |
| gingival epithelium | UBERON:0001949 | 76.16 | gold quality |
| globus pallidus | UBERON:0001875 | 75.29 | silver quality |
| gingiva | UBERON:0001828 | 73.56 | gold quality |
| cardia of stomach | UBERON:0001162 | 71.86 | gold quality |
| ventral tegmental area | UBERON:0002691 | 71.42 | silver quality |
| body of tongue | UBERON:0011876 | 71.15 | gold quality |
| sperm | CL:0000019 | 71.14 | gold quality |
| pericardium | UBERON:0002407 | 70.82 | silver quality |
| secondary oocyte | CL:0000655 | 70.72 | silver quality |
| vena cava | UBERON:0004087 | 70.44 | gold quality |
| pons | UBERON:0000988 | 70.33 | silver quality |
| visceral pleura | UBERON:0002401 | 70.15 | silver quality |
| substantia nigra pars reticulata | UBERON:0001966 | 69.88 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 69.85 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 69.68 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 69.67 | gold quality |
| male germ cell | CL:0000015 | 69.48 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 69.45 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 69.28 | gold quality |
| synovial joint | UBERON:0002217 | 68.93 | silver quality |
| dorsal root ganglion | UBERON:0000044 | 68.80 | gold quality |
| renal medulla | UBERON:0000362 | 68.64 | gold quality |
| pancreatic ductal cell | CL:0002079 | 68.53 | silver quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 68.51 | gold quality |
| trachea | UBERON:0003126 | 68.36 | gold quality |
| pylorus | UBERON:0001166 | 68.15 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 68.11 | gold quality |
| biceps brachii | UBERON:0001507 | 67.80 | gold quality |
| vastus lateralis | UBERON:0001379 | 67.56 | gold quality |
| penis | UBERON:0000989 | 67.44 | gold quality |
| deltoid | UBERON:0001476 | 67.36 | silver quality |
| corpus epididymis | UBERON:0004359 | 67.08 | gold quality |
| quadriceps femoris | UBERON:0001377 | 67.07 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 67.06 | gold quality |
| cauda epididymis | UBERON:0004360 | 66.93 | gold quality |
| jejunum | UBERON:0002115 | 66.27 | silver quality |
| pigmented layer of retina | UBERON:0001782 | 66.25 | gold quality |
| myocardium | UBERON:0002349 | 65.90 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 65.79 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 65.72 | gold quality |
| urethra | UBERON:0000057 | 65.71 | gold quality |
| occipital lobe | UBERON:0002021 | 65.58 | gold quality |
| oral cavity | UBERON:0000167 | 65.54 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 65.26 | gold quality |
| mammalian vulva | UBERON:0000997 | 65.23 | gold quality |
| parietal lobe | UBERON:0001872 | 65.21 | gold quality |
| primary visual cortex | UBERON:0002436 | 64.94 | gold quality |
| tibia | UBERON:0000979 | 64.93 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 64.79 | gold quality |
| frontal cortex | UBERON:0001870 | 64.51 | gold quality |
| cerebellar vermis | UBERON:0004720 | 64.47 | gold quality |
| prefrontal cortex | UBERON:0000451 | 64.43 | gold quality |
| postcentral gyrus | UBERON:0002581 | 64.19 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 64.08 | gold quality |
| squamous epithelium | UBERON:0006914 | 64.02 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 63.88 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 63.80 | gold quality |
| upper arm skin | UBERON:0004263 | 63.79 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 63.78 | gold quality |
| tibialis anterior | UBERON:0001385 | 63.70 | silver quality |
| entorhinal cortex | UBERON:0002728 | 63.53 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 63.50 | gold quality |
| neocortex | UBERON:0001950 | 63.35 | gold quality |
| amniotic fluid | UBERON:0000173 | 63.26 | gold quality |
| cartilage tissue | UBERON:0002418 | 62.79 | gold quality |
| right frontal lobe | UBERON:0002810 | 62.61 | gold quality |
| jejunal mucosa | UBERON:0000399 | 62.59 | silver quality |
| epithelium of esophagus | UBERON:0001976 | 61.81 | gold quality |
| thymus | UBERON:0002370 | 61.68 | gold quality |
| cerebral cortex | UBERON:0000956 | 61.38 | gold quality |
| placenta | UBERON:0001987 | 61.18 | gold quality |
| triceps brachii | UBERON:0001509 | 60.96 | gold quality |
| endothelial cell | CL:0000115 | 60.71 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 60.54 | gold quality |
| bronchial epithelial cell | CL:0002328 | 60.50 | gold quality |
| cranial nerve II | UBERON:0000941 | 60.27 | silver quality |
| cingulate cortex | UBERON:0003027 | 60.17 | gold quality |
| heart right ventricle | UBERON:0002080 | 60.07 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 60.05 | gold quality |
| mammary duct | UBERON:0001765 | 60.02 | gold quality |
| skin of hip | UBERON:0001554 | 59.98 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 59.93 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 59.82 | gold quality |
| endocervix | UBERON:0000458 | 59.69 | gold quality |
| bronchus | UBERON:0002185 | 59.69 | gold quality |
| cerebellum | UBERON:0002037 | 59.65 | gold quality |
| duodenum | UBERON:0002114 | 59.55 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 59.47 | gold quality |
| parotid gland | UBERON:0001831 | 59.33 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 59.31 | gold quality |
| telencephalon | UBERON:0001893 | 59.26 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.79 |
HPA expression
RNA tissue specificity: Tissue enriched
39 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM |
|---|---|---|
| Liver | tissue | 92.1 |
| Postcentral gyrus | tissue | 1.9 |
| Locus coeruleus | tissue | 0.9 |
| Choroid plexus | tissue | 0.8 |
| Superior colliculi | tissue | 0.8 |
| Small intestine | tissue | 0.7 |
| Hippocampus | tissue | 0.7 |
| Testis | tissue | 0.6 |
| Nucleus accumbens | tissue | 0.6 |
| Epididymis | tissue | 0.5 |
| Duodenum | tissue | 0.5 |
| Cervix | tissue | 0.4 |
| Vagina | tissue | 0.4 |
| Fallopian tube | tissue | 0.4 |
| Pituitary gland | tissue | 0.3 |
| Ovary | tissue | 0.3 |
| Medulla oblongata | tissue | 0.3 |
| Skin 1 | tissue | 0.2 |
| Retina | tissue | 0.2 |
| Parathyroid gland | tissue | 0.2 |
| Prostate | tissue | 0.2 |
| Hippocampal formation | tissue | 0.2 |
| Periaqueductal gray | tissue | 0.2 |
| Breast | tissue | 0.1 |
| Heart muscle | tissue | 0.1 |
| Adipose tissue | tissue | 0.1 |
| Esophagus | tissue | 0.1 |
| Salivary gland | tissue | 0.1 |
| Endometrium 1 | tissue | 0.1 |
| Midbrain | tissue | 0.1 |
| Thalamus | tissue | 0.1 |
| Placenta | tissue | 0.1 |
| Cerebellum | tissue | 0.1 |
| Substantia nigra | tissue | 0.1 |
| Kidney | tissue | 0.1 |
| Spinal cord | tissue | 0.1 |
| Septum | tissue | 0.1 |
| Caudate putamen | tissue | 0.1 |
| Appendix | tissue | 0.1 |
Brain sub-regions (HPA Brain Atlas): detected in 185; highest nTPM — Arcuate nucleus (1.8), Mammillary body (1.8), Precentral gyrus (1.5), Ventromedial nucleus (1.5), Inferior parietal lobule (1.4).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATF4, CEBPB, DNMT1, EPAS1, FOS, HNF4A, PITX2, SP1
miRNA regulators (miRDB)
Targeting F7 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 57 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-298 | 99.63 | 67.56 | 1916 |
| HSA-MIR-3682-3P | 99.58 | 67.63 | 865 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-653-5P | 99.46 | 67.35 | 1300 |
| HSA-MIR-548B-3P | 99.38 | 67.26 | 1000 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-8085 | 99.28 | 67.56 | 2362 |
| HSA-MIR-10522-5P | 99.26 | 68.50 | 2087 |
| HSA-MIR-4667-3P | 99.26 | 65.45 | 1608 |
| HSA-MIR-593-3P | 99.22 | 67.28 | 1327 |
Functional genomics
gnomAD constraint: pLI 1.11e-11, LOEUF 1.11, missense Z 0.369 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000346342 — one region, missense o/e 0.95.
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- TF-FVIIa interaction elicits intracellular signalling events implicated in sepsis, inflammation, angiogenesis, metastasis and atherosclerosis. These include the sequential activation of Src-like kinases, MAP kinases, small GTPases and calcium signalling. (PMID:11776298)
- An analog of an F7 motif, Cys-Glu-Gln-Tyr-Cys exerts its antithrombotic effect by blocking the docking of Tyr101 into a hydrophobic pocket in the catalytic domain, disrupting an essential interaction between this domain & 2d EGF-like domain of F7. (PMID:11848442)
- Factor VII activity is an independent predictor of cardiovascular mortality in elderly women of a Sicilian population. (PMID:11858478)
- Finnish carriers of the Q allele of factor Vii r/Q353 have a decreased risk of fatal myocardial infarction. (PMID:11858502)
- significant activation of FVII occurs following infusion of APOA1 into healthy male fasting subjects (PMID:11916081)
- Four novel mutations have been identified: IVS 2+1G–>C Phe 24 deletion, Leu300Pro and Arg277His. Homozygosity for the IVS2+1G–>C mutation was lethal, whereas homozygosity for the Phe 24 deletion was accompanied by a severe bleeding tendency. (PMID:11920218)
- A frequent human coagulation Factor VII mutation (A294V, c152) in loop 140s affects the interaction with activators, tissue factor and substrates. (PMID:11931672)
- The R353Q polymorphism at codon 353 and the 10 base pair insertion polymorphism of the FVII gene were associated with FVIIc and FVIIAg levels. Heterozygous individuals had lower FVIIc and FVIIAg levels than those homozygous for the common alleles. (PMID:11943935)
- TF cytoplasmic domain-independent stimulation of protein synthesis via activation of S6 kinase contributes to FVIIa effects in pathophysiology. (PMID:12019261)
- Factor VIIa induces release of von Willebrand factor from human umbilical vein endothelial cells by a tyrosine kinase dependent pathway (PMID:12083486)
- Role of zymogenicity-determining residues in cofactor interaction and macromolecular substrate recognition (PMID:12135351)
- a three-dimensional model of the ternary complex between FVIIa:TF:FIX was built using a full-space search algorithm in combination with computational graphics (PMID:12152682)
- A factor VIIa mutant with enhanced membrane affinity showed 10- to 13-fold higher activity in blood clotting in hemophiliacs. (PMID:12152685)
- FVII level is independently associated with inflammatory variables and suggest their pathophysiological link in hypercholesterolemic patients. (PMID:12208482)
- REVIEW: role of tissue factor-FVIIa complex in pathophysiological processes and effect of the inhibitors of the tissue factor:factor VII pathway (PMID:12356487)
- the inability of V154G FVIIa to accommodate an inhibitor in the active site, indicating an improperly shaped specificity pocket, would explain the low activity of the zymogen-like form of FVIIa, which is predominant in the absence of TF. (PMID:12358603)
- Two naturally occurring FVII mutations have no affinity change for TF; deficiency of coagulant activities is due to the loss of an efficient catalytic machinery in the FVII molecule. (PMID:12428089)
- factors II and X are essential for the hemostatic effects of rFVIIa, and that factors V and VIII promote these effects (PMID:12428092)
- mutagenesis of gamma-carboxyglutamic acid domain generates maximum enhancement of membrane contact site (PMID:12506121)
- The finding of FVII synthesis outside the liver–in normal and atherosclerotic vessels as well as smooth muscle cells, fibroblasts, and keratinocytes in vitro–may be indicative of other cellular functions for this coagulation protein. (PMID:12524237)
- 2 homozygous nucleotide substitutions were identified in the F7 gene: a IVS7+2T>G transversion involving the IVS7 donor splice site, followed by a mutation at nucleotide 10588 that would result in a missense variation (Arg224Gln). (PMID:12676783)
- FVIIa binding to tissue factor provided protection against apoptosis induced by growth factor deprivation, primarily through activation of PI3-kinase/Akt pathway, and to a lesser extent, p44/42 MAPK pathway (PMID:12738672)
- the factor VII R353 allele is associated with lower concentrations of plasma apolipoprotein B levels (PMID:12851844)
- the 4G/4G-PAI-1 genotype might be a protective factor against atherothrombotic cerebral infarction (ACI), whereas the factor V point mutation (1691G-A) and the factor VII Arg/Gln353 gene polymorphism have not proved to be risk factors for ACI (PMID:12859287)
- ARP1 interacted with two regions of the FVII 5’ flanking region, the hepatic nuclear factor 4 binding region and the nuclear hormone response region, indicating a role for ARP1 in transcriptional modulation of the FVII gene. (PMID:12871323)
- p21Ras activation is instrumental in FVIIa signal transduction and the FVIIa-dependent activation of p21Ras involves either PKC or Src-dependent mechanisms, depending on the cell type investigated. (PMID:12871370)
- Presence of the silent dimorphism H115H, the polymorphism R353Q and the mutation A294V. (PMID:12888866)
- Double heterozygous mutations coding the same amino acid of F VII were found in a pedigree with hereditary coagulation factor VII deficiency. (PMID:12903033)
- Factor Xa and thrombin, but not factor VIIa, induce expression of MCP-1, IL-8, IL-6 and VEGF, and expression of receptors implicated in signaling by these coagulation factors PAR-1, PAR-2 and PAR-3 in lung and dermal fibroblasts (PMID:12941034)
- plasma FVII with the promoter haplotype -670C/-630G/402A is related to increased coagulant activity, risk of an initial coronary event, and reporter gene expression (PMID:14521602)
- factor VIIa has a role in aggregation of alphaIIbbeta3-deficient platelets (PMID:14592825)
- the 60s loop of human coagulation factor VII has a role in interdomain crosstalk (PMID:14691565)
- model characterizes likely enzyme-binding exosites on FVIIa and Xa that may be involved in the ternary complex (sTF-VIIa-Xa) formation and the membrane binding region of the ternary complex. (PMID:14750502)
- The proteolytic domains of both VII and VIIa seem to interact with the same surface on thromboplastin (TF) with nearly identical residue energetics; therefore, zymogen VII can readily adopt a VIIa-like conformation required for binding to TF. (PMID:14756558)
- FVIIa induces cell survival through STAT5-dependent Bcl(XL) production and Jak2-dependent activation of PKB. TF/FVIIa-signal transduction is dependent on G12/G13 class G proteins. (PMID:15016732)
- an epidemiologic study revealed Plasma FVIIa concentrations were influenced by R353Q polymorphism, and the Q allele may be protective against premature myocardial infarction (PMID:15170085)
- Binding of FVIIa to TF on the surface of SMCs induces proliferation via a coagulation-independent mechanism and possibly indicates a new link between coagulation, inflammation, and atherosclerosis. (PMID:15173027)
- TF/FVIIa complex up-regulates the transcription of u-PAR in human ovarian cancer cells. (PMID:15182581)
- EGFR, PYK2, Yes, and SHP-2 are involved in transduction of the TF/FVIIa signal possibly via transactivation of the EGF receptor. (PMID:15213840)
- Factor VIIa has a role in mediating tenase function on activated platelets under flow (PMID:15304047)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | f7 | ENSDARG00000034862 |
| danio_rerio | f7i | ENSDARG00000075827 |
| mus_musculus | F7 | ENSMUSG00000031443 |
| rattus_norvegicus | F7 | ENSRNOG00000032737 |
Paralogs (16): F11 (ENSG00000088926), F9 (ENSG00000101981), HGFAC (ENSG00000109758), F10 (ENSG00000126218), KLK10 (ENSG00000129451), F12 (ENSG00000131187), C1RL (ENSG00000139178), C1R (ENSG00000159403), KLKB1 (ENSG00000164344), C1S (ENSG00000182326), PRSS55 (ENSG00000184647), CFD (ENSG00000197766), CFI (ENSG00000205403), PRSS51 (ENSG00000253649), HP (ENSG00000257017), HPR (ENSG00000261701)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:109325) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 15 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal snout morphology | 1 |
| internal hemorrhage | 1 |
| premature death | 1 |
| abnormal blood coagulation | 1 |
| cardiac fibrosis | 1 |
| abnormal bone structure | 1 |
| decreased lean body mass | 1 |
| abnormal circulating protein level | 1 |
| heart hemorrhage | 1 |
| increased total body fat amount | 1 |
| decreased bone mineral content | 1 |
| neonatal lethality, incomplete penetrance | 1 |
| preweaning lethality, incomplete penetrance | 1 |
| increased prothrombin time | 1 |
| increased partial thromboplastin time | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Pan troglodytes | Q95ND7 | 99.8% | Diamond |
| Pongo abelii | Q5RCB6 | 99.5% | Diamond |
| Tropidechis carinatus | P81428 | 99.3% | Diamond |
| Notechis scutatus scutatus | P82807 | 99.3% | Diamond |
| Pan paniscus | Q2F9P4 | 98.7% | Diamond |
| Hoplocephalus stephensii | P83370 | 97.6% | Diamond |
| Bos taurus | P00741 | 96.8% | Diamond |
| Ovis aries | P16291 | 96.8% | Diamond |
| Macaca mulatta | Q28520 | 96.0% | Diamond |
| Oxyuranus microlepidotus | Q58L95 | 95.1% | Diamond |
| Oxyuranus scutellatus | Q58L96 | 95.1% | Diamond |
| Pseudonaja textilis | Q1L659 | 93.6% | Diamond |
| Capra hircus | Q28315 | 92.7% | Diamond |
| Cryptophis nigrescens | B5G6G5 | 89.2% | Diamond |
| Canis lupus familiaris | P19540 | 88.5% | Diamond |
| Felis catus | Q6SA95 | 88.5% | Diamond |
| Oryctolagus cuniculus | Q28661 | 86.3% | Diamond |
| Sus scrofa | P16293 | 86.1% | Diamond |
| Pseudechis porphyriacus | Q58L93 | 86.1% | Diamond |
| Demansia vestigiata | A6MFK7 | 85.8% | Diamond |
| Acropora millepora | B8VIV4 | 85.1% | Diamond |
| Equus caballus | Q28380 | 84.7% | Diamond |
| Macaca nemestrina | Q28858 | 79.4% | Diamond |
| Anopheles gambiae | P35040 | 76.9% | Diamond |
| Cavia porcellus | P16295 | 75.8% | Diamond |
| Strongylocentrotus purpuratus | P49013 | 74.9% | Diamond |
| Bombus ignitus | B5U2W0 | 67.2% | Diamond |
| Gallus gallus | Q804X6 | 58.1% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| ATP11A | protein-coding | 23250 |
| MCF2L | protein-coding | 23263 |
| F10-AS2 | protein-coding | 102724474 |
| F10-AS1 | ncRNA | 104413892 |
| F10 | protein-coding | 2159 |
| MCF2L-AS1 | ncRNA | 100289410 |
Protein
Protein identifiers
Coagulation factor VII — P08709 (reviewed: P08709)
Alternative names: Proconvertin, Serum prothrombin conversion accelerator
All UniProt accessions (3): P08709, E9PH36, F5H8B0
UniProt curated annotations — full annotation on UniProt →
Function. Initiates the extrinsic pathway of blood coagulation. Serine protease that circulates in the blood in a zymogen form. Factor VII is converted to factor VIIa by factor Xa, factor XIIa, factor IXa, or thrombin by minor proteolysis. In the presence of tissue factor and calcium ions, factor VIIa then converts factor X to factor Xa by limited proteolysis. Factor VIIa also converts factor IX to factor IXa in the presence of tissue factor and calcium.
Subunit / interactions. Heterodimer of a light chain and a heavy chain linked by a disulfide bond. Interacts (activated) with iripin-8, a serine protease inhibitor from Ixodes ricinus saliva.
Subcellular location. Secreted.
Tissue specificity. Plasma.
Post-translational modifications. The vitamin K-dependent, enzymatic carboxylation of some glutamate residues allows the modified protein to bind calcium. The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains. O- and N-glycosylated. N-glycosylation at Asn-205 occurs cotranslationally and is mediated by STT3A-containing complexes, while glycosylation at Asn-382 is post-translational and is mediated STT3B-containing complexes before folding. O-fucosylated by POFUT1 on a conserved serine or threonine residue found in the consensus sequence C2-X(4,5)-[S/T]-C3 of EGF domains, where C2 and C3 are the second and third conserved cysteines. Can be either O-glucosylated or O-xylosylated at Ser-112 by POGLUT1 in vitro.
Disease relevance. Factor VII deficiency (FA7D) [MIM:227500] A hemorrhagic disease with variable presentation. The clinical picture can be very severe, with the early occurrence of intracerebral hemorrhages or repeated hemarthroses, or, in contrast, moderate with cutaneous-mucosal hemorrhages (epistaxis, menorrhagia) or hemorrhages provoked by a surgical intervention. Finally, numerous subjects are completely asymptomatic despite very low factor VII levels. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the peptidase S1 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P08709-1 | A | yes |
| P08709-2 | B |
RefSeq proteins (3): NP_000122, NP_001254483, NP_062562* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000294 | GLA_domain | Domain |
| IPR000742 | EGF | Domain |
| IPR001254 | Trypsin_dom | Domain |
| IPR001314 | Peptidase_S1A | Family |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR009003 | Peptidase_S1_PA | Homologous_superfamily |
| IPR012224 | Pept_S1A_FX | Family |
| IPR017857 | Coagulation_fac-like_Gla_dom | Homologous_superfamily |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR018114 | TRYPSIN_HIS | Active_site |
| IPR033116 | TRYPSIN_SER | Active_site |
| IPR035972 | GLA-like_dom_SF | Homologous_superfamily |
| IPR043504 | ||
| IPR050442 | Peptidase_S1_coag_factors | Family |
Pfam: PF00008, PF00089, PF00594, PF14670
Enzyme classification (BRENDA)
- EC 3.4.21.21 — coagulation factor VIIa (BRENDA: 5 organisms, 78 substrates, 228 inhibitors, 104 Km, 93 kcat entries)
Substrate kinetics (BRENDA)
9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| FACTOR X | — | 48 |
| N-METHYLSULFONYL-D-PHE-GLY-ARG-P-NITROANILIDE | 0.8–50 | 17 |
| D-ILE-PRO-ARG-P-NITROANILIDE | 0.85–10.4 | 14 |
| D-ILE-PRO-ARG-4-NITROANILIDE | 1.2–14 | 10 |
| H-D-ISOLEUCYL-L-PROLYL-ARGININE-P-NITROANILIDE | 1.5–9.8 | 8 |
| BENZYLOXYCARBONYL-ARG-P-NITROBENZYL ESTER | 0.19 | 1 |
| METHANESULFONYL-D-CYCLOHEXYLALANYL-BUTYL-ARGININ | 0.67 | 1 |
| S-2288 | 11.8 | 1 |
| SPECTROZYME FVIIA | 0.67 | 1 |
UniProt features (222 total): sequence variant 122, strand 26, helix 21, disulfide bond 12, modified residue 11, turn 8, glycosylation site 5, domain 4, active site 3, site 2, mutagenesis site 2, chain 2, signal peptide 1, propeptide 1, binding site 1, splice variant 1
Structure
Experimental structures (PDB)
showing 30 of 114 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 6R2W | Crystal structure of the super-active FVIIa variant VYT in complex with tissue factor | X-RAY DIFFRACTION | 1.25 |
| 5PAG | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.36 |
| 5PAX | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.36 |
| 4YLQ | Crystal Structure of a FVIIa-Trypsin Chimera (FT) in Complex with Soluble Tissue Factor | X-RAY DIFFRACTION | 1.4 |
| 5PAO | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.4 |
| 5PAV | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.4 |
| 5L0S | human POGLUT1 in complex with Factor VII EGF1 and UDP | X-RAY DIFFRACTION | 1.45 |
| 5PAE | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.45 |
| 5PB2 | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.45 |
| 5PAS | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.48 |
| 5PAC | human factor VIIa in complex with … | X-RAY DIFFRACTION | 1.5 |
| 5PAF | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.5 |
| 4JZE | Structure of factor VIIA in complex with the inhibitor … | X-RAY DIFFRACTION | 1.52 |
| 5PA9 | Crystal Structure of Factor VIIa in complex with phenylmethanamine;hydrochloride | X-RAY DIFFRACTION | 1.55 |
| 5PAU | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.55 |
| 5PAK | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.56 |
| 8QOD | CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED INHIBITOR | X-RAY DIFFRACTION | 1.57 |
| 5PAQ | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.59 |
| 2BZ6 | Orally available Factor7a inhibitor | X-RAY DIFFRACTION | 1.6 |
| 5PAM | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.6 |
| 5PAT | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.6 |
| 5PAN | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.62 |
| 5PAY | Crystal Structure of Factor VIIa in complex with … | X-RAY DIFFRACTION | 1.66 |
| 1KLI | Cofactor-and substrate-assisted activation of factor VIIa | X-RAY DIFFRACTION | 1.69 |
| 5PAJ | Crystal Structure of Factor VIIa in complex with 1-(1-aminoisoquinolin-6-yl)-3-benzylurea | X-RAY DIFFRACTION | 1.7 |
| 2C4F | crystal structure of factor VII.stf complexed with pd0297121 | X-RAY DIFFRACTION | 1.72 |
| 3TH2 | Mg2+ Is Required for Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of … | X-RAY DIFFRACTION | 1.72 |
| 5L30 | Factor VIIa in complex with the inhibitor … | X-RAY DIFFRACTION | 1.73 |
| 5PAI | human factor VIIa in complex with … | X-RAY DIFFRACTION | 1.73 |
| 5L2Z | Factor VIIa in complex with the inhibitor … | X-RAY DIFFRACTION | 1.79 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P08709-F1 | 82.64 | 0.49 |
Antibody-complex structures (SAbDab)
3 antibodies co-crystallized with this protein: 8CN9, 9P0X, SUTACIMIG
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Hydrolases, Peptidases, Serine-type peptidases, Predicted secreted proteins, Plasma proteins, Candidate cardiovascular disease genes, Disease related genes, FDA approved drug targets, Biotech drugs, Human disease related genes
Protein evidence: Evidence at protein level
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (5)
| Position | Role |
|---|---|
| 404 | charge relay system |
| 113 | important for s-112 for o-xylosylation |
| 212–213 | cleavage; by factor xa, factor xiia, factor ixa, or thrombin |
| 253 | charge relay system |
| 302 | charge relay system |
Ligand- & substrate-binding residues (1)
| Position | Role |
|---|---|
| 398 | substrate |
Post-translational modifications (11)
| Type | Positions |
|---|---|
| 4-carboxyglutamate | 66, 67, 74, 76, 79, 80, 85, 86, 89, 95 |
| (3r)-3-hydroxyaspartate | 123 |
Disulfide bonds (12)
| Type | Positions |
|---|---|
| Disulfide bond | 77–82, 110–121, 115–130, 132–141, 151–162, 158–172, 174–187, 195–322, 219–224, 238–254, 370–389, 400–428 |
Glycosylation sites (5)
| Type | Positions |
|---|---|
| O-linked (glc…) serine | 112 |
| O-linked (xyl…) serine | 112 |
| O-linked (fuc) serine | 120 |
| N-linked (glcnac…) asparagine | 205, 382 |
Mutagenesis-validated functional residues (2)
| Position | Phenotype |
|---|---|
| 112 | complete loss of o-glycosylation and o-xylosylation by poglut1. |
| 113 | no effect on o-glycosylation by poglut1. drastic decrease in o-xylosylation. |
Function
Pathways and Gene Ontology
Reactome pathways
5 curated (TAS) of 14; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
14 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-159740 | Gamma-carboxylation of protein precursors | curated |
| R-HSA-9769735 | Initiation of coagulation cascade | curated |
| R-HSA-9769739 | Regulation of clotting cascade | curated |
| R-HSA-159782 | Removal of aminoterminal propeptides from gamma-carboxylated proteins | curated |
| R-HSA-159763 | Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus | curated |
| R-HSA-1368108 | BMAL1:CLOCK,NPAS2 activates circadian expression | electronic |
| R-HSA-9909396 | Circadian clock | — |
| R-HSA-163841 | Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | — |
| R-HSA-159854 | Gamma-carboxylation, transport, and amino-terminal cleavage of proteins | — |
| R-HSA-109582 | Hemostasis | — |
| R-HSA-392499 | Metabolism of proteins | — |
| R-HSA-597592 | Post-translational protein modification | — |
| R-HSA-140834 | — | |
| R-HSA-140877 | — |
MSigDB gene sets: 277 (showing top):
GOBP_CIRCADIAN_RHYTHM, GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, MORF_RAGE, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_PROTEIN_ACTIVATION_CASCADE, MORF_FLT1, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_REGULATION_OF_WOUND_HEALING, GOBP_RESPONSE_TO_ESTRADIOL, GOBP_CELL_CHEMOTAXIS, GOBP_RESPONSE_TO_ACID_CHEMICAL, GOBP_INFLAMMATORY_RESPONSE, GOBP_REGULATION_OF_COAGULATION, STEARMAN_LUNG_CANCER_EARLY_VS_LATE_DN, GOBP_POSITIVE_REGULATION_OF_TOR_SIGNALING
GO Biological Process (30): response to hypoxia (GO:0001666), positive regulation of leukocyte chemotaxis (GO:0002690), blood coagulation (GO:0007596), circadian rhythm (GO:0007623), response to carbon dioxide (GO:0010037), positive regulation of platelet-derived growth factor receptor signaling pathway (GO:0010641), protein processing (GO:0016485), positive regulation of blood coagulation (GO:0030194), positive regulation of cell migration (GO:0030335), animal organ regeneration (GO:0031100), positive regulation of TOR signaling (GO:0032008), response to estradiol (GO:0032355), response to vitamin K (GO:0032571), response to genistein (GO:0033595), response to estrogen (GO:0043627), positive regulation of positive chemotaxis (GO:0050927), response to growth hormone (GO:0060416), response to cholesterol (GO:0070723), response to thyroxine (GO:0097068), response to Thyroid stimulating hormone (GO:1904400), response to 2,3,7,8-tetrachlorodibenzodioxine (GO:1904612), response to astaxanthin (GO:1905217), response to thyrotropin-releasing hormone (GO:1905225), proteolysis (GO:0006508), response to stress (GO:0006950), hemostasis (GO:0007599), response to hormone (GO:0009725), response to nutrient levels (GO:0031667), regulation of body fluid levels (GO:0050878), response to thyroid hormone (GO:0097066)
GO Molecular Function (8): serine-type endopeptidase activity (GO:0004252), signaling receptor binding (GO:0005102), calcium ion binding (GO:0005509), serine-type peptidase activity (GO:0008236), endopeptidase activity (GO:0004175), protein binding (GO:0005515), peptidase activity (GO:0008233), hydrolase activity (GO:0016787)
GO Cellular Component (7): extracellular region (GO:0005576), endoplasmic reticulum lumen (GO:0005788), Golgi lumen (GO:0005796), plasma membrane (GO:0005886), extracellular matrix (GO:0031012), vesicle (GO:0031982), serine-type peptidase complex (GO:1905286)
Reactome top-level categories
6 top-level categories:
| Category | Pathways |
|---|---|
| Gamma-carboxylation, transport, and amino-terminal cleavage of proteins | 3 |
| Coagulation pathway | 2 |
| Circadian clock | 1 |
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
| Post-translational protein modification | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
showing 60 of 62 GO namespaces:
| Category | Terms |
|---|---|
| response to oxygen-containing compound | 3 |
| positive regulation of chemotaxis | 2 |
| peptidase activity | 2 |
| intracellular organelle lumen | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| positive regulation of leukocyte migration | 1 |
| regulation of leukocyte chemotaxis | 1 |
| leukocyte chemotaxis | 1 |
| hemostasis | 1 |
| wound healing | 1 |
| coagulation | 1 |
| rhythmic process | 1 |
| positive regulation of signal transduction | 1 |
| regulation of platelet-derived growth factor receptor signaling pathway | 1 |
| platelet-derived growth factor receptor signaling pathway | 1 |
| proteolysis | 1 |
| protein maturation | 1 |
| blood coagulation | 1 |
| regulation of blood coagulation | 1 |
| positive regulation of coagulation | 1 |
| positive regulation of wound healing | 1 |
| positive regulation of hemostasis | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| positive regulation of cell motility | 1 |
| regeneration | 1 |
| animal organ development | 1 |
| TOR signaling | 1 |
| regulation of TOR signaling | 1 |
| positive regulation of intracellular signal transduction | 1 |
| response to lipid | 1 |
| response to vitamin | 1 |
| response to ketone | 1 |
| response to hydroxyisoflavone | 1 |
| response to hormone | 1 |
| positive chemotaxis | 1 |
| regulation of positive chemotaxis | 1 |
| response to peptide hormone | 1 |
| response to sterol | 1 |
| response to alcohol | 1 |
| response to amino acid | 1 |
| response to thyroid hormone | 1 |
| response to L-phenylalanine derivative | 1 |
| response to glycoprotein | 1 |
| endopeptidase activity | 1 |
| serine-type peptidase activity | 1 |
| protein binding | 1 |
| metal ion binding | 1 |
| serine hydrolase activity | 1 |
| binding | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| catalytic activity | 1 |
| cellular anatomical structure | 1 |
| endoplasmic reticulum | 1 |
| Golgi apparatus | 1 |
| membrane | 1 |
| cell periphery | 1 |
| external encapsulating structure | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 8 of 46 annotations. The rest are phylogenetic / computational / electronic (IEA).
8 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| blood coagulation | BP | direct assay |
| positive regulation of TOR signaling | BP | direct assay |
| positive regulation of leukocyte chemotaxis | BP | direct assay |
| positive regulation of platelet-derived growth factor receptor signaling pathway | BP | direct assay |
| positive regulation of positive chemotaxis | BP | direct assay |
| protein processing | BP | direct assay |
| extracellular matrix | CC | high-throughput assay |
| serine-type peptidase complex | CC | physical interaction |
Protein interactions and networks
STRING
showing 15 of 945 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| F7 | F3 | P13726 | 978 |
| F7 | TFPI | P10646 | 942 |
| F7 | F8 | P00451 | 942 |
| F7 | SERPINC1 | P01008 | 871 |
| F7 | THBD | P07204 | 869 |
| F7 | GGCX | P38435 | 826 |
| F7 | VWF | P04275 | 793 |
| F7 | VKORC1 | Q9BQB6 | 793 |
| F7 | GXYLT1 | Q4G148 | 767 |
| F7 | GXYLT2 | A0PJZ3 | 759 |
| F7 | SERPINE1 | P05121 | 751 |
| F7 | SERPIND1 | P05546 | 708 |
| F7 | CPB2 | Q96IY4 | 699 |
| F7 | EGF | P01133 | 686 |
| F7 | MCFD2 | Q8NI22 | 631 |
IntAct
Human interaction partners of F7 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
6 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| F3 | direct interaction | 0.880 | 5 |
| L3 | direct interaction | 0.440 | 1 |
| RCHY1 | physical association | 0.370 | 1 |
| BECN1 | association | 0.350 | 1 |
| C1QL1 | association | 0.350 | 1 |
| IKBKG | physical association | 0.000 | 1 |
BioGRID (19 interactions; top human partners by supporting records): F3 (Reconstituted Complex; 2 records), ALB (Affinity Capture-MS), C1QL1 (Affinity Capture-MS), CEP250 (Affinity Capture-MS), CEP76 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), DMWD (Affinity Capture-MS), F10 (Biochemical Activity), FUS (Affinity Capture-MS), HNRNPL (Affinity Capture-RNA), NMU (Affinity Capture-MS), RCHY1 (Two-hybrid), REV3L (Cross-Linking-MS (XL-MS)), UIMC1 (Affinity Capture-MS), USP49 (Affinity Capture-MS)
SIGNOR signaling
10 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| “Factor FVIIa:TF” | “up-regulates activity” | F7 | cleavage |
| F9 | “up-regulates activity” | F7 | cleavage |
| F10 | “up-regulates activity” | F7 | cleavage |
| PROC | “down-regulates activity” | F7 | cleavage |
| F2 | “up-regulates activity” | F7 | |
| F7 | “up-regulates activity” | F9 | binding |
| F7 | “up-regulates activity” | F10 | binding |
| F7 | “form complex” | “Factor FVIIa:TF” | binding |
| GGCX | “up-regulates activity” | F7 | carboxylation |
| HPN | “up-regulates activity” | F7 | cleavage |
Protein complexes (CORUM) (3)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
3 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| ★ F3-F7-F10-TFPI complex | 4 | TFPI, F10, F3, F7 |
| ★ F3-F7-F10 complex | 3 | F10, F3, F7 |
| ★ F3-F7 complex | 2 | F3, F7 |
Disease & clinical
Genetic variants
Variant evidence for F7: 359 ClinVar records (71 pathogenic / likely pathogenic); 14 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
359 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 25 |
| Likely pathogenic | 46 |
| Uncertain significance | 164 |
| Likely benign | 38 |
| Benign | 15 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 71 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 12071 | NM_019616.4(F7):c.1190C>T (p.Thr397Met) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1322860 | NM_019616.4(F7):c.568C>T (p.Arg190Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1691295 | NM_019616.4(F7):c.225+1G>C | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 374352 | NM_019616.4(F7):c.1219G>A (p.Ala407Thr) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 626946 | NM_000131.4(F7):c.-61T>G | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 626922 | NM_019616.4(F7):c.-30A>C | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 627193 | NM_019616.4(F7):c.961G>A (p.Gly321Ser) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 3351690 | NM_019616.4(F7):c.943C>T (p.Arg315Cys) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1315977 | NM_019616.4(F7):c.400G>A (p.Gly134Ser) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1703834 | NM_019616.4(F7):c.1206G>A (p.Trp402Ter) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2692371 | NM_019616.4(F7):c.580G>C (p.Gly194Arg) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 3381103 | NM_019616.4(F7):c.365-2A>G | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 3575769 | NM_019616.4(F7):c.1043G>A (p.Cys348Tyr) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 3352537 | NM_019616.4(F7):c.1008G>A (p.Met336Ile) | Pathogenic | criteria provided, single submitter | 2 |
| 1098445 | NM_019616.4(F7):c.394G>T (p.Glu132Ter) | Pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore F7’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 26 predictions of 990):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 13:113117471–113117472 | acceptor_loss | 1.0000 | 4 |
| 13:113117597–113117598 | donor_loss | 1.0000 | 2 |
| 13:113118412 | acceptor_loss | 1.0000 | |
| 13:113115658–113115659 | acceptor_loss | 0.9900 | 5 |
| 13:113117466 | acceptor_gain | 0.9900 | |
| 13:113117472 | acceptor_loss | 0.9900 | |
| 13:113117597–113117598 | donor_loss | 0.9900 | 3 |
| 13:113118411 | acceptor_loss | 0.9900 | 2 |
| 13:113110851–113110852 | donor_loss | 0.9800 | 6 |
| 13:113115659 | acceptor_loss | 0.9800 |
AlphaMissense
868 missense substitutions predicted likely pathogenic (of 2,883 scored), across 217 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| D302 | 8 | 0.970 | 0.992 |
| D403 | 8 | 0.969 | 0.987 |
| D398 | 8 | 0.927 | 0.982 |
| H253 | 8 | 0.911 | 0.958 |
| S404 | 8 | 0.894 | 0.980 |
| S423 | 8 | 0.891 | 0.990 |
| F388 | 8 | 0.890 | 0.988 |
| N155 | 8 | 0.778 | 0.937 |
| C130 | 7 | 0.987 | 0.993 |
| C141 | 7 | 0.985 | 0.995 |
| C115 | 7 | 0.984 | 0.994 |
| C254 | 7 | 0.984 | 0.991 |
| C400 | 7 | 0.984 | 0.994 |
| C121 | 7 | 0.982 | 0.994 |
| W344 | 7 | 0.982 | 0.997 |
| C238 | 7 | 0.980 | 0.993 |
| C132 | 7 | 0.979 | 0.987 |
| C389 | 7 | 0.979 | 0.991 |
| C322 | 7 | 0.978 | 0.989 |
| C187 | 7 | 0.973 | 0.987 |
HPA cancer prognostics
RNA cancer specificity: Cancer enriched (Liver Hepatocellular Carcinoma)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Chromophobe (TCGA) | favorable | 3.4e-05 |
Disease associations
OMIM: gene MIM:613878 | disease phenotypes: MIM:227500, MIM:608446
GenCC curated gene-disease
2 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| congenital factor VII deficiency | Definitive | Autosomal recessive | 5 |
| factor VII deficiency | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| factor VII deficiency | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (3 panels, 3 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
3 panels:
| Panel | Rating |
|---|---|
| Bleeding and platelet disorders | green |
| Factor VII deficiency | green |
| Inherited bleeding disorders | green |
Mondo (3): factor VII deficiency (MONDO:0002244), congenital factor VII deficiency (MONDO:0009211), myocardial infarction, susceptibility to (MONDO:0012039)
Orphanet (1): Congenital factor VII deficiency (Orphanet:327)
HPO phenotypes
18 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000132 | Menorrhagia |
| HP:0000138 | Ovarian cyst |
| HP:0000225 | Gingival bleeding |
| HP:0000421 | Epistaxis |
| HP:0000978 | Bruising susceptibility |
| HP:0001892 | Abnormal bleeding |
| HP:0002170 | Intracranial hemorrhage |
| HP:0002239 | Gastrointestinal hemorrhage |
| HP:0004846 | Prolonged bleeding after surgery |
| HP:0005261 | Joint hemorrhage |
| HP:0006298 | Prolonged bleeding after dental extraction |
| HP:0008151 | Prolonged prothrombin time |
| HP:0008169 | Reduced factor VII activity |
| HP:0010881 | Abnormality of the umbilical cord |
| HP:0011463 | Childhood onset |
| HP:0011891 | Post-partum hemorrhage |
| HP:0012233 | Intramuscular hematoma |
GWAS associations
14 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST007401_30 | Factor VII activity | 0.000000e+00 |
| GCST007401_31 | Factor VII activity | 0.000000e+00 |
| GCST007401_8 | Factor VII activity | 0.000000e+00 |
| GCST007402_1 | Factor VII activity or levels | 0.000000e+00 |
| GCST000625_1 | Factor VII levels | 9e-256 |
| GCST006017_8 | Prothrombin time | 5e-246 |
| GCST006585_2129 | Blood protein levels | 2e-191 |
| GCST007401_32 | Factor VII activity | 2e-58 |
| GCST001573_1 | Prothrombin time | 4e-56 |
| GCST007401_29 | Factor VII activity | 6e-38 |
| GCST007401_27 | Factor VII activity | 4e-22 |
| GCST007401_28 | Factor VII activity | 2e-19 |
| GCST000082_1 | Factor VII | 5e-16 |
| GCST008103_61 | Bipolar disorder | 1e-6 |
EFO canonical traits (from GWAS)
2 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004619 | factor VII measurement |
| EFO:0008390 | prothrombin time measurement |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005168 | Factor VII Deficiency | C15.378.100.100.310; C15.378.100.141.310; C15.378.463.310; C16.320.099.310 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (4): CHEMBL2095194 (PROTEIN COMPLEX), CHEMBL2111412 (SELECTIVITY GROUP), CHEMBL2111477 (SELECTIVITY GROUP), CHEMBL3991 (SINGLE PROTEIN)
Drugs by curated mechanism of action (ChEMBL)
Drugs whose curated ChEMBL mechanism of action targets the F7 protein itself — single-protein targets only (drugs acting on a protein family or complex that merely includes it are excluded). Includes antibodies and oligonucleotides that bioactivity screening does not capture.
6 curated-mechanism drugs:
| Drug | Modality | Max phase |
|---|---|---|
| COAGULATION FACTOR VII HUMAN | Protein | 4 |
| EPTACOG ALFA (ACTIVATED) | Protein | 4 |
| EPTACOG BETA (ACTIVATED) | Unknown | 4 |
| PROTHROMBIN COMPLEX CONCENTRATE | Protein | 3 |
| EPTACOG ALFA PEGOL (ACTIVATED) | Unknown | 2 |
| PCI-27483 | Small molecule | 2 |
Molecules with ChEMBL bioactivity
Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,374,508 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
8 molecules by phase:
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL266349 | MELAGATRAN | 4 | 5,456 |
| CHEMBL1140 | NIACINAMIDE | 4 | 233,296 |
| CHEMBL464982 | GAMOLENIC ACID | 3 | 26,834 |
| CHEMBL460026 | ICOSAPENT | 3 | 60,919 |
| CHEMBL4112929 | MILVEXIAN | 3 | 142 |
| CHEMBL465183 | DIHOMO-GAMMA-LINOLENIC ACID | 2 | 2,109 |
| CHEMBL267476 | LINOLEIC ACID | 2 | 325,752 |
| CHEMBL8659 | OLEIC ACID | 2 | 720,000 |
PharmGKB: 1 entry (CPIC guideline: no)
PharmGKB variant annotations
Per-publication pharmacogenomic findings for this gene (significant associations).
5 published findings:
| Variant | Drug(s) | Category | Finding | PMID |
|---|---|---|---|---|
| rs6046 | warfarin | Efficacy | Genotype AA is associated with increased sen sitivity to warfarin during induction when treated with warfarin as compared to genotypes AG + GG. | PMID:22071881 |
| rs6046 | warfarin | Toxicity | Genotype AA is associated with increased risk of over-anticoagulation when treated with warfarin as compared to genotypes AG + GG. | PMID:22071881 |
| rs510317 | warfarin | Dosage | Genotypes AA + AG are associated with increased dose of warfarin as compared to genotype GG. | PMID:19387626 |
| rs510335 | warfarin | Dosage | Genotypes GT + TT are associated with decreased warfarin dose when treated with warfarin as compared to genotype GG. | PMID:15590403 |
| rs510317 | warfarin | Dosage | Genotype GG is associated with decreased warfarin dose when treated with warfarin as compared to genotype AA. | PMID:14656880 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — S1: Chymotrypsin
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 1 [PMID: 16650987] | Inhibition | 9.0 | pKi |
| compound 11 [PMID: 16413183] | Inhibition | 7.0 | pKi |
Binding affinities (BindingDB)
892 measured of 1058 human assays (1068 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| (15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-4,15,17-trimethyl-7-[(3S)-oxolan-3-yl]oxy-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.02 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-4,15,17-trimethyl-7-[(3R)-oxolan-3-yl]oxy-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.05 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3956096 | KI | 0.06 nM | |
| 2-(3’-Amino-5-chloro-2-hydroxy-biphenyl-3-yl)-1H-benzoimidazole-5-carboxamidine | KI | 0.078 nM | |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-4,15,17-trimethyl-7-[1-(2H-tetrazol-5-yl)cyclopropyl]-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.12 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(2S)-1-hydroxypropan-2-yl]oxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.14 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-amino-7-fluoroisoquinolin-6-yl)amino]-8-fluoro-4,15,17-trimethyl-7-propan-2-ylsulfonyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.14 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-4,15,17-trimethyl-7-[2-(2-oxopyrrolidin-1-yl)ethoxy]-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.14 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(2S)-1-methoxypropan-2-yl]oxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.14 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3900166 | KI | 0.14 nM | |
| 1-[3-(Aminomethyl)phenyl]-N-[3-fluoro-2-(methylsulfonyl)-[1,1-biphenyl]-4-yl]-3-(trifluoromethyl)-1H-pyrazole-5-carboxamide | KI | 0.15 nM | |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-(1,3-difluoropropan-2-yloxy)-8-fluoro-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.15 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-amino-7-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-8-fluoro-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.17 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(2R)-1-hydroxypropan-2-yl]oxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.17 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.17 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-(3-methoxypropoxy)-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.2 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3984725 | KI | 0.22 nM | |
| (2R,15R)-2-[(1-amino-7-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.23 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(3R,4S)-4-hydroxyoxolan-3-yl]oxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.23 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3898956 | KI | 0.24 nM | |
| (2R,15R)-2-[(1-amino-7-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-19-fluoro-17-methoxy-4,15-dimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.25 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-15-(fluoromethyl)-4,17-dimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.28 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3978562 | KI | 0.28 nM | |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-N-ethyl-4,15,17-trimethyl-3,12-dioxo-N-(1,3-thiazol-2-ylmethyl)-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-7-carboxamide | KI | 0.3 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-tert-butylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.31 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-[(2R)-2-cyclopropyl-2-hydroxyethoxy]-8-fluoro-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.34 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R)-N-[(3-aminobenzene)sulfonyl]-2-[(4-carbamimidoyl-3-hydroxyphenyl)amino]-2-(3,5-diethoxy-2-fluorophenyl)acetamide | KI | 0.35 nM | |
| (2R,15R)-2-[(1-amino-8-fluoroisoquinolin-6-yl)amino]-8-fluoro-4,15,17-trimethyl-7-propan-2-ylsulfonyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.36 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(1-isocyanocyclopropyl)methoxy]-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.44 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-[(2S)-2-hydroxypropoxy]-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.46 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-15-(difluoromethyl)-4,17-dimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.5 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| 1-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]cyclopropane-1-carboxylic acid | KI | 0.55 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3898371 | KI | 0.55 nM | |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-N,N-diethyl-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-7-carboxamide | KI | 0.57 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R)-2-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]butanoic acid | KI | 0.61 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-diethoxyphosphoryl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.62 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL2409219 | KI | 0.62 nM | |
| (2R,15R)-2-[(1-amino-8-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-8-fluoro-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 0.66 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| CHEMBL3967204 | KI | 0.72 nM | |
| (2R)-2-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]-4,4-difluorobutanoic acid | KI | 0.9 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| (2R,15R)-2-[(1-amino-8-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 1 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| Biotinylated E-76 peptide analogue | IC50 | 1 nM | |
| ALCDNPRIDRWYCQFVEG peptide analogue | IC50 | 1 nM | |
| 2-[5-(5-carbamimidoyl-1H-benzoimidazol-2-yl)-6,2’-dihydroxy-5’-ureidomethyl-biphenyl-3-yl]-succinic acid | KI | 1 nM | |
| 2-[5-(5-carbamimidoyl-1H-indol-2-yl)-6-hydroxy-3’-nitro-biphenyl-3-yl]-succinic acid | KI | 1 nM | |
| CHEMBL3909009 | KI | 1 nM | |
| CHEMBL2431588 | KI | 1 nM | |
| (2R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-ethylsulfonyl-17,20-dimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(19),6,8,10(21),16(20),17-hexaene-3,12-dione | KI | 1.1 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
| ALCDNPRIDRWYCQFVEG peptide analogue | IC50 | 1.1 nM | |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-(azetidine-1-carbonyl)-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | KI | 1.2 nM | US-9174974: Macrocyclic factor VIIa inhibitors |
ChEMBL bioactivities
936 potent at pChembl≥5 of 1030 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | IC50 | 0.01 | nM | CHEMBL505189 |
| 11.00 | IC50 | 0.01 | nM | CHEMBL505190 |
| 10.96 | IC50 | 0.011 | nM | CHEMBL484616 |
| 10.96 | IC50 | 0.011 | nM | CHEMBL506771 |
| 10.96 | IC50 | 0.011 | nM | CHEMBL526504 |
| 10.92 | IC50 | 0.012 | nM | CHEMBL523251 |
| 10.89 | IC50 | 0.013 | nM | CHEMBL520364 |
| 10.85 | IC50 | 0.014 | nM | CHEMBL506772 |
| 10.70 | Ki | 0.02 | nM | CHEMBL3930738 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL524370 |
| 10.68 | IC50 | 0.021 | nM | CHEMBL524732 |
| 10.62 | IC50 | 0.024 | nM | CHEMBL503584 |
| 10.60 | IC50 | 0.025 | nM | CHEMBL487956 |
| 10.54 | IC50 | 0.029 | nM | CHEMBL507281 |
| 10.52 | IC50 | 0.03 | nM | CHEMBL488778 |
| 10.48 | IC50 | 0.033 | nM | CHEMBL507020 |
| 10.47 | IC50 | 0.034 | nM | CHEMBL484615 |
| 10.44 | IC50 | 0.036 | nM | CHEMBL499632 |
| 10.38 | IC50 | 0.042 | nM | CHEMBL487955 |
| 10.35 | IC50 | 0.045 | nM | CHEMBL505720 |
| 10.30 | Ki | 0.05 | nM | CHEMBL3986081 |
| 10.28 | IC50 | 0.052 | nM | CHEMBL497067 |
| 10.22 | Ki | 0.06 | nM | CHEMBL3956096 |
| 10.22 | IC50 | 0.06 | nM | CHEMBL498047 |
| 10.17 | IC50 | 0.067 | nM | CHEMBL519886 |
| 10.12 | IC50 | 0.076 | nM | CHEMBL527118 |
| 10.11 | Ki | 0.078 | nM | CHEMBL73737 |
| 10.04 | IC50 | 0.092 | nM | CHEMBL500948 |
| 10.01 | IC50 | 0.097 | nM | CHEMBL485705 |
| 10.01 | IC50 | 0.098 | nM | CHEMBL525274 |
| 9.98 | IC50 | 0.104 | nM | CHEMBL524548 |
| 9.92 | Ki | 0.12 | nM | CHEMBL3902759 |
| 9.92 | IC50 | 0.12 | nM | CHEMBL224485 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL526193 |
| 9.85 | Ki | 0.14 | nM | CHEMBL3900166 |
| 9.85 | Ki | 0.14 | nM | CHEMBL3977297 |
| 9.85 | Ki | 0.14 | nM | CHEMBL3967595 |
| 9.85 | Ki | 0.14 | nM | CHEMBL3903215 |
| 9.85 | Ki | 0.14 | nM | CHEMBL3969432 |
| 9.82 | Ki | 0.15 | nM | CHEMBL3906646 |
| 9.80 | Ki | 0.16 | nM | CHEMBL3891120 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3961226 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3915633 |
| 9.77 | Ki | 0.17 | nM | CHEMBL3891120 |
| 9.72 | IC50 | 0.19 | nM | CHEMBL499829 |
| 9.70 | Ki | 0.2 | nM | CHEMBL3920165 |
| 9.66 | Ki | 0.22 | nM | CHEMBL3984725 |
| 9.64 | Ki | 0.23 | nM | CHEMBL3901391 |
| 9.64 | Ki | 0.23 | nM | CHEMBL3892246 |
| 9.64 | IC50 | 0.231 | nM | CHEMBL504391 |
PubChem BioAssay actives
1119 with measured affinity, of 1900 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 135986123 | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-methoxyphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[4-[4-(aminomethyl)thiophen-3-yl]-2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-prop-1-ynylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(thiophen-2-ylmethyl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(furan-3-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[3-(hydroxymethyl)furan-2-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-thiophen-2-ylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-thiophen-3-ylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-ethenylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[2-(hydroxymethyl)thiophen-3-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-prop-2-enylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(1H-pyrrol-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(3-hydroxyprop-1-en-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(3-methylbut-2-enyl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(4-hydroxybut-1-en-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(furan-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[4-(hydroxymethyl)thiophen-3-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[4-[4-(azidomethyl)thiophen-3-yl]-2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[2-(hydroxymethyl)furan-3-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[4-(hydroxymethyl)furan-3-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[4-benzyl-2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-ethynylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-prop-1-en-2-ylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 2-[4-[(Z)-but-2-enyl]-2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | <0.0001 | uM |
| 1-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]cyclobutane-1-carboxylic acid | 1316610: Inhibition of recombinant human TF-factor 7a using factor 10 as substrate at 37 degC | ki | 0.0001 | uM |
| 1-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]cyclohexane-1-carboxylic acid | 1316610: Inhibition of recombinant human TF-factor 7a using factor 10 as substrate at 37 degC | ki | 0.0001 | uM |
| 2-[3-(3-aminophenyl)-5-chloro-2-hydroxyphenyl]-3H-benzimidazole-5-carboximidamide | 72364: Binding affinity for factor VIIa/TF | ki | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-phenylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(1,3-thiazol-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[(1Z)-3-methylbuta-1,3-dienyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[(E)-3-hydroxyprop-1-enyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-propylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[4-(azidomethyl)-2-[(4-carbamimidoylphenyl)carbamoyl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(1-methylpyrrol-2-yl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-hydroxyphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-ethylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0001 | uM |
| (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | 1315769: Inhibition of full-length human TF/recombinant human factor 7a assessed as decrease in conversion of factor 10 to factor 10a by measuring S2765 hydrolysis after 15 mins | ki | 0.0002 | uM |
| (2R,15R)-2-[(1-amino-7-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | 1315769: Inhibition of full-length human TF/recombinant human factor 7a assessed as decrease in conversion of factor 10 to factor 10a by measuring S2765 hydrolysis after 15 mins | ki | 0.0002 | uM |
| 1-[(2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]cyclopentane-1-carboxylic acid | 1316610: Inhibition of recombinant human TF-factor 7a using factor 10 as substrate at 37 degC | ki | 0.0002 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-pyridin-4-ylphenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0002 | uM |
| 3-[3-[(4-carbamimidoylphenyl)carbamoyl]-4-[2-carboxy-4-(2-methylpropylcarbamoyl)phenyl]phenyl]thiophene-2-carboxylic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0002 | uM |
| (5R,11R)-11-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-16-cyclopropylsulfonyl-7-(2,2-difluoroethoxy)-5,13-dimethyl-2,13-diazatricyclo[13.3.1.16,10]icosa-1(19),6,8,10(20),15,17-hexaene-3,12-dione | 1331371: Inhibition of recombinant human factor-7a/TF using S2288 as substrate measured after 60 mins at 37 degC | ki | 0.0002 | uM |
| [(2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-4,15,17-trimethyl-3,12-dioxo-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaen-7-yl]-ethoxyphosphinic acid | 1315769: Inhibition of full-length human TF/recombinant human factor 7a assessed as decrease in conversion of factor 10 to factor 10a by measuring S2765 hydrolysis after 15 mins | ki | 0.0003 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-[3-(hydroxymethyl)thiophen-2-yl]phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0003 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(3-hydroxyprop-1-ynyl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0003 | uM |
| (2R)-N-(3-aminophenyl)sulfonyl-2-(4-carbamimidoyl-3-hydroxyanilino)-2-(3,5-diethoxy-2-fluorophenyl)acetamide | 1195253: Inhibition of human factor 7a | ki | 0.0003 | uM |
| (2R,15R)-2-[(1-amino-4-fluoroisoquinolin-6-yl)amino]-7-cyclopropylsulfonyl-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.16,10]henicosa-1(18),6,8,10(21),16,19-hexaene-3,12-dione | 1315769: Inhibition of full-length human TF/recombinant human factor 7a assessed as decrease in conversion of factor 10 to factor 10a by measuring S2765 hydrolysis after 15 mins | ki | 0.0004 | uM |
| 2-[2-[(4-carbamimidoylphenyl)carbamoyl]-4-(4-hydroxybut-1-ynyl)phenyl]-5-(2-methylpropylcarbamoyl)benzoic acid | 397857: Inhibition of tissue factor/factor 7a | ic50 | 0.0005 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Ethinyl Estradiol | affects binding, increases expression, affects cotreatment, decreases expression, affects reaction | 6 |
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation | 4 |
| Gestodene | affects cotreatment, increases expression, affects reaction | 3 |
| Warfarin | increases reaction, affects response to substance, decreases expression | 3 |
| Aflatoxin B1 | affects methylation, decreases expression, decreases methylation | 3 |
| ethinyl estradiol-desogestrel combination | increases expression, affects reaction | 2 |
| Contraceptives, Oral | increases activity, increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| Levonorgestrel | affects cotreatment, decreases expression, increases expression | 2 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| antibiotic G 418 | increases activity, increases expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| norgestimate | affects cotreatment, increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| dienogest | increases expression, affects cotreatment | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| CycloProvera | decreases expression | 1 |
| CMF protocol | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| norgestimate, ethinyl estradiol drug combination | increases expression | 1 |
| estradiol, norethindrone drug combination | decreases expression | 1 |
| estradiol valerate-dienogest | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| NuvaRing | increases expression | 1 |
ChEMBL screening assays
255 unique, capped per target: 237 binding, 17 functional, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1005944 | Binding | Inhibition of human tissue factor/factor 7a | Novel 3-carboxamide-coumarins as potent and selective FXIIa inhibitors. — *J Med Chem* |
| CHEMBL855827 | Functional | Anticoagulant activity in human plasma measured as prothrombin time | Preparation of 1-(3-aminobenzo[d]isoxazol-5-yl)-1H-pyrazolo[4,3-d]pyrimidin-7(6H)-ones as potent, selective, and efficacious inhibitors of coagulation factor Xa. — *Bioorg Med Chem Lett* |
| CHEMBL4621401 | ADMET | Inhibition of human F7a using fluorescent peptide as substrate by florescence assay | Structure-Based Design and Preclinical Characterization of Selective and Orally Bioavailable Factor XIa Inhibitors: Demonstrating the Power of an Integrated S1 Protease Family Approach. — *J Med Chem* |
Cellosaurus cell lines
5 cell lines: 2 transformed cell line, 1 induced pluripotent stem cell, 1 cancer cell line, 1 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1ND | YCMi002-A | Induced pluripotent stem cell | Female |
| CVCL_E3FM | HEK293T-FVII | Transformed cell line | Female |
| CVCL_E3FN | HepG2-FVII | Cancer cell line | Male |
| CVCL_WG88 | HEK293-Nrf2 clone 2-FVII | Transformed cell line | Female |
| CVCL_XY59 | imHC-FVII | Telomerase immortalized cell line | Sex unspecified |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 169 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00707772 | Phase 4 | COMPLETED | Pegasys® Plus Ribavirin in Hemophilic Patients With Hepatitis C Virus Infection |
| NCT04108260 | Phase 4 | UNKNOWN | The Effectiveness of Recombinant Coagulation Factor IX With Recombinant Albumin (rIX-FP) in Severe Hemophilia B Patients |
| NCT05728528 | Phase 4 | COMPLETED | Impact of Moderate Intensity Physical Activities on PK-guided EHL FVIII Concentrates Prophylaxis Severe HA Patients |
| NCT06752850 | Phase 4 | ACTIVE_NOT_RECRUITING | A Study to Investigate the Course of Synovial Hypertrophy in Patients With Haemophilia A on Efanesoctocog Alfa Prophylaxis |
| NCT07406139 | Phase 4 | RECRUITING | PCC Treatment for Hemophilia Patients With Inhibitor(2022PCC-A) |
| NCT03079063 | Phase 3 | COMPLETED | Study Comparing the Pharmacokinetic of Biosimilar Eptacog Alfa With Novoseven®, in Patients With Congenital Factor VII Deficiency |
| NCT00606060 | Phase 3 | COMPLETED | BAY14-2222 Continuous Infusion in Surgeries |
| NCT02306694 | Phase 3 | COMPLETED | Prospective Biomarkers of Bone Metabolism in Hemophilia A |
| NCT02548143 | Phase 3 | COMPLETED | LR769 in Congenital Hemophilia Patients With Inhibitors Undergoing Elective Surgery or Invasive Procedures |
| NCT03549871 | Phase 3 | COMPLETED | A Study of Fitusiran in Severe Hemophilia A and B Patients Previously Receiving Factor or Bypassing Agent Prophylaxis |
| NCT03754790 | Phase 3 | ACTIVE_NOT_RECRUITING | Long-term Safety and Efficacy Study of Fitusiran in Patients With Hemophilia A or B, With or Without Inhibitory Antibodies to Factor VIII or IX |
| NCT03974113 | Phase 3 | COMPLETED | Fitusiran Prophylaxis in Male Pediatric Subjects Aged 1 to Less Than 12 Years With Hemophilia A or B |
| NCT05662319 | Phase 3 | ACTIVE_NOT_RECRUITING | A Study to Test a Medicine (Fitusiran) Injected Under the Skin for Preventing Bleeding Episodes in Male Adolescent or Adult Participants With Severe Hemophilia |
| NCT05695391 | Phase 3 | TERMINATED | Safety and Efficacy of FVIIa to Prevent Excessive Bleeding in Hemophilia Patients With Inhibitors Undergoing Major Surgery |
| NCT06922045 | Phase 3 | ACTIVE_NOT_RECRUITING | Phase III Clinical Trial of STSP-0601 for Injection in Hemophilia Patients |
| NCT07285460 | Phase 3 | RECRUITING | A Study to Investigate the Efficacy and Safety of Fitusiran Prophylaxis in Male Participants Aged 1 to Less Than 12 Years With Hemophilia A or B |
| NCT07347249 | Phase 2 | RECRUITING | A Clinical Study to Assess Sutacimig in Participants With Congenital Factor VII Deficiency |
| NCT07711158 | Phase 2 | NOT_YET_RECRUITING | A Phase II Exploratory Study of SR604 Injection Evaluating the Safety and Efficacy in the Treatment of Congenital Coagulation Factor VII Deficiency |
| NCT00055341 | Phase 2 | COMPLETED | Treatment of Hepatitis C in Hemophilic Patients With HIV |
| NCT02586012 | Phase 2 | TERMINATED | Weight-based Dosing in Hemophilia A |
| NCT05421429 | Phase 2 | COMPLETED | KN057 Multiple Dose Study in Moderately Severe to Severe Hemophilia |
| NCT05619926 | Phase 2 | COMPLETED | Safety and Efficacy of STSP-0601 in Adult Patients With Hemophilia A or B Without Inhibitor |
| NCT06289166 | Phase 2 | COMPLETED | Safety and Efficacy of STSP-0601 in Adult Patients with Hemophilia a or B with Inhibitor |
| NCT05651061 | Phase 1 | COMPLETED | A Phase I of SS109 in Hemophilia A or and B With Inhibitors |
| NCT06349473 | Phase 1 | RECRUITING | A Study of Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of SR604 in Two Participants Groups (Part A: Healthy Participants, and Part B: Participants With Hemophilia A or Hemophilia B or Factor VII Deficiency) |
| NCT01191372 | Phase 1 | TERMINATED | First-in-Human and Proof-of-Mechanism Study of ARC19499 Administered to Hemophilia Patients |
| NCT01704521 | Phase 1 | COMPLETED | Viral Kinetics in HCV Clearance in Subjects With Hemophilia |
| NCT01708564 | Phase 1 | COMPLETED | A Phase I Safety, Pharmacokinetics and Pharmacodynamics Study of Recombinant Factor VIIa in Adult Patients With Hemophilia A or B |
| NCT02060305 | Phase 1 | TERMINATED | Intra-articular Bevacizumab for Recurrent Hemarthroses at Target Joints With Chronic Hemophilic Synovitis |
| NCT02108132 | Phase 1 | UNKNOWN | Allogenic Bone Marrow Derived Mesenchymal Stem Cell Therapy in Cases of Hemophilia |
| NCT03855696 | Phase 1 | COMPLETED | A Study to Investigate the Safety, Tolerability, PK and PD of MG1113 in Healthy Subjects and Hemophilia Patients |
| NCT03996486 | Phase 1 | WITHDRAWN | Study to Test the Safety of an Investigational Drug Given Repeatedly to Adult Men With Severe Hemophilia |
| NCT04747964 | Phase 1 | COMPLETED | A Safety Study of STSP-0601 in Adult Patients With Hemophilia A or B With Inhibitor |
| NCT04878731 | Phase 1 | COMPLETED | Study to Evaluate Safety and Tolerability of a Single Dose of PF-06741086 in Chinese Adult Participants With Severe Hemophilia |
| NCT05493631 | Phase 1 | COMPLETED | A Phase 1b Study to Assess the Safety, Tolerability, PK and PD of MG1113 in Hemophilia Patient |
| NCT04548791 | Phase 1/2 | TERMINATED | Study of Coagulation Factor VIIa Marzeptacog Alfa (Activated) in Subjects With Inherited Bleeding Disorders |
| NCT07644832 | Phase 1/2 | RECRUITING | An Open-label, Multicenter Phase I/II Clinical Trial to Evaluate the Safety, Tolerability, Efficacy, and Pharmacokinetic/Pharmacodynamic (PK/PD) Characteristics of SR604 Injection in Patients With Hemophilia A/B and Congenital Factor VII Deficiency |
| NCT01269138 | Not specified | COMPLETED | Treatment of Inherited Factor VII Deficiency |
| NCT03372993 | Not specified | COMPLETED | Prospective, Non-interventional Study to Evaluate Immunogenicity of AryoSeven |
| NCT03655223 | Not specified | ACTIVE_NOT_RECRUITING | Early Check: Expanded Screening in Newborns |
| NCT06938542 | Not specified | ENROLLING_BY_INVITATION | Palliative Care Needs of Children With Rare Diseases and Their Families |
| NCT05027230 | Phase 1/2 | COMPLETED | A Safety and Efficacy Study of STSP-0601 in Adult Patients With Hemophilia A or B With Inhibitor |
| NCT05920512 | Phase 1/2 | UNKNOWN | Combination Regimen With Sodium Valproate for Severe Hemophilia: a Single-arm, Phase 1, Pilot Trial. |
| NCT06010953 | Phase 1/2 | COMPLETED | SS109 and NovoSeven ® PK / PD Profile, and Preliminary Efficacy and Safety of SS109 on Demand Treatment |
| NCT03272568 | Early Phase 1 | COMPLETED | Extended Half Life Factor (EHF) Products For Heavy Menstrual Bleeding in Hemophilia Carriers |
| NCT06345833 | Early Phase 1 | WITHDRAWN | Topical and Local TXA in Facelifts - A Randomized Controlled Double Blinded Study |
| NCT00127543 | Not specified | WITHDRAWN | Kid Cards: Teaching Kids About Medicines |
| NCT00324493 | Not specified | UNKNOWN | Musculoskeletal Function in Hemophilia |
| NCT00340548 | Not specified | TERMINATED | Host Genetic Factors Influencing HIV1 and HCV Viral Loads and AIDS Clinical Progression in a Hemophilia Cohort (HGDS-3) |
| NCT00344435 | Not specified | COMPLETED | Genetic Susceptibility to Factor VIII Inhibitors |
| NCT00640289 | Not specified | COMPLETED | Clinical Trial of Factor XIII (FXIII) Concentrate |
| NCT00697385 | Not specified | COMPLETED | The Use of Cyclokapron for Treatment and Management of Women With Bleeding Disorders |
| NCT00798499 | Not specified | COMPLETED | A Feasibility Study to Collect Data in Patients With Haemophilia |
| NCT00927992 | Not specified | COMPLETED | Study Evaluating Liver Transplantation in Haemophilia Patients in Spain |
| NCT01000844 | Not specified | COMPLETED | Joint Outcome Study Continuation for Children With Severe Factor VIII Deficiency |
| NCT01029808 | Not specified | COMPLETED | Bleeding Symptoms of Carriers of Hemophilia A and B |
| NCT01105923 | Not specified | UNKNOWN | Study of an Intervention to Improve Problem List Accuracy and Use |
| NCT01232634 | Not specified | COMPLETED | Validation of Ultrasound as a Diagnostic Tool for Assessment of Hemophilic Arthropathy of Knees and Ankles |
| NCT01431326 | Not specified | COMPLETED | Pharmacokinetics of Understudied Drugs Administered to Children Per Standard of Care |
| NCT01817868 | Not specified | COMPLETED | Comparison of Efficacy, Safety and Costs of Recombinant FVIII Products Between On-demand and Secondary Prophylaxis Groups in Haemophilia A Patients |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for F7 across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: congenital factor VII deficiency, factor VII deficiency
- Targeted by drugs: Coagulation Factor Vii Human, Eptacog Alfa (Activated), Eptacog Beta (Activated), Prothrombin Complex Concentrate
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital factor VII deficiency, factor VII deficiency, hemophilia, myocardial infarction, susceptibility to, thrombocytopenia
- Pharmacogenomically associated drugs (drugs whose metabolism/response is associated with variants in this gene (PharmGKB) — not drugs that target it): Warfarin