FABP5
gene geneOn this page
Also known as E-FABPPA-FABPKFABP
Summary
FABP5 (fatty acid binding protein 5, HGNC:3560) is a protein-coding gene on chromosome 8q21.13, encoding Fatty acid-binding protein 5 (Q01469). Intracellular carrier for long-chain fatty acids and related active lipids, such as endocannabinoids, that regulate the metabolism and actions of the ligands they bind.
This gene encodes the fatty acid binding protein found in epidermal cells, and was first identified as being upregulated in psoriasis tissue. Fatty acid binding proteins are a family of small, highly conserved, cytoplasmic proteins that bind long-chain fatty acids and other hydrophobic ligands. FABPs may play roles in fatty acid uptake, transport, and metabolism. Polymorphisms in this gene are associated with type 2 diabetes. The human genome contains many pseudogenes similar to this locus.
Source: NCBI Gene 2171 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 25 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001444
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3560 |
| Approved symbol | FABP5 |
| Name | fatty acid binding protein 5 |
| Location | 8q21.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | E-FABP, PA-FABP, KFABP |
| Ensembl gene | ENSG00000164687 |
| Ensembl biotype | protein_coding |
| OMIM | 605168 |
| Entrez | 2171 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 6 protein_coding, 2 retained_intron
ENST00000297258, ENST00000396359, ENST00000481695, ENST00000486269, ENST00000917311, ENST00000917312, ENST00000943582, ENST00000943583
RefSeq mRNA: 1 — MANE Select: NM_001444
NM_001444
CCDS: CCDS6228
Canonical transcript exons
ENST00000297258 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001086607 | 81283873 | 81283974 |
| ENSE00001163337 | 81280536 | 81280674 |
| ENSE00003606453 | 81283366 | 81283538 |
| ENSE00003851074 | 81284514 | 81284775 |
Expression profiles
Bgee: expression breadth ubiquitous, 141 present calls, max score 99.94.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 87.0237 / max 5695.4528, expressed in 1767 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 89541 | 84.1181 | 1757 |
| 89540 | 2.6842 | 1278 |
| 89539 | 0.2215 | 89 |
Top tissues by expression
141 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.94 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.89 | gold quality |
| ventricular zone | UBERON:0003053 | 99.84 | gold quality |
| embryo | UBERON:0000922 | 99.70 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.70 | gold quality |
| skin of leg | UBERON:0001511 | 99.63 | gold quality |
| zone of skin | UBERON:0000014 | 99.60 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.56 | gold quality |
| omental fat pad | UBERON:0010414 | 99.43 | gold quality |
| apex of heart | UBERON:0002098 | 99.40 | gold quality |
| adipose tissue | UBERON:0001013 | 99.37 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 99.32 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.32 | gold quality |
| placenta | UBERON:0001987 | 99.20 | gold quality |
| rectum | UBERON:0001052 | 99.03 | gold quality |
| vagina | UBERON:0000996 | 99.00 | gold quality |
| esophagus | UBERON:0001043 | 98.99 | gold quality |
| cortical plate | UBERON:0005343 | 98.95 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.94 | gold quality |
| lymph node | UBERON:0000029 | 98.86 | gold quality |
| hypothalamus | UBERON:0001898 | 98.80 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.73 | gold quality |
| right lung | UBERON:0002167 | 98.68 | gold quality |
| vermiform appendix | UBERON:0001154 | 98.65 | gold quality |
| caudate nucleus | UBERON:0001873 | 98.56 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.54 | gold quality |
| transverse colon | UBERON:0001157 | 98.54 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.52 | gold quality |
| Ammon’s horn | UBERON:0001954 | 98.46 | gold quality |
| spleen | UBERON:0002106 | 98.42 | gold quality |
Single-cell (SCXA)
Detected in 45 experiment(s), a significant marker in 35.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 15347.51 |
| E-HCAD-1 | yes | 11392.37 |
| E-HCAD-24 | yes | 4929.06 |
| E-MTAB-9906 | yes | 4454.52 |
| E-MTAB-10018 | yes | 4439.74 |
| E-MTAB-8322 | yes | 3845.58 |
| E-MTAB-8381 | yes | 1455.49 |
| E-MTAB-6075 | yes | 1343.37 |
| E-GEOD-81608 | yes | 875.30 |
| E-GEOD-125970 | yes | 743.03 |
| E-GEOD-81547 | yes | 610.11 |
| E-CURD-84 | yes | 489.92 |
| E-CURD-11 | yes | 406.44 |
| E-HCAD-4 | yes | 68.80 |
| E-CURD-122 | yes | 67.52 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
15 targeting FABP5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-603 | 98.58 | 68.28 | 1603 |
| HSA-MIR-1178-3P | 98.57 | 67.09 | 890 |
| HSA-MIR-216B-3P | 98.55 | 67.19 | 1223 |
| HSA-MIR-7158-3P | 98.46 | 66.45 | 728 |
| HSA-MIR-6757-5P | 98.08 | 65.50 | 724 |
| HSA-MIR-203B-3P | 97.82 | 66.27 | 979 |
| HSA-MIR-6748-3P | 97.20 | 65.66 | 836 |
| HSA-MIR-1270 | 96.94 | 66.65 | 931 |
| HSA-MIR-620 | 96.94 | 66.79 | 888 |
| HSA-MIR-4764-3P | 96.81 | 67.94 | 580 |
| HSA-MIR-6847-3P | 96.50 | 67.30 | 582 |
| HSA-MIR-549A-5P | 96.35 | 68.08 | 587 |
Literature-anchored findings (GeneRIF, showing 40)
- Solution structure and backbone dynamics (PMID:12049637)
- S100A7 expression appears to stabilize epidermal fatty acid binding protein level in keratinocytes (PMID:12839573)
- the overexpression of FABP in cultured senescent dermal microvascular endothelial cells is closely related to skin aging. (PMID:15335354)
- Metastasis of squamous cell carcinoma of the oral tongue is associated with down-regulation of epidermal fatty acid binding protein (E-FABP). (PMID:16759896)
- E-FABP may play a key role in the progress of invasiveness and metastasis in human breast cancer. (PMID:17428383)
- study found levels of nuclear & cytoplasmic C-FABP expression in prostate cancer cells were significantly higher than those in normal & benign prostatic hyperplasia tissues & increased C-FABP was significantly associated with reduced patient survival time (PMID:18360704)
- Results demonstrated the ubiquitous overexpressions of E-FABP and CAPS in EC and the correlations to the clinicopathologic parameters. CAPS might be a potential prognostic factor for survival in patients with endometrial cancer (PMID:18729184)
- epidermal-fatty acid binding protein is upregulated in Human papillomavirus related oral squamous cell carcinoma (PMID:19337991)
- fatty acid-binding protein-5, squamous cell carcinoma antigens 2, alpha-enolase, annexin II, apolipoprotein A-I and albumin were detected at a high level in Atopic dermatitis skin lesions, but scarcely in the normal controls (PMID:19339807)
- FABP5 plays a critical role in lipid metabolism in retinal pigment epithetlial cells; knockdown results in accumulation of cellular triglycerides, decreased cholesterol levels, and reduced secretion of apoB100 protein and lipoproteins (PMID:19434059)
- brain-expressed fatty-acid binding protein (FABP) genes 3, 5 and 7 may have roles in schizophrenia and bipolar disorder (PMID:19554614)
- FABP5 could be a regulated target of Nurr1. (PMID:19861119)
- Overexpression of FABP5 in oral cancer cells increased cell proliferation and invasiveness by increasing expression of MMP-9. (PMID:20040021)
- Fatty acid-binding protein 5 and PPARbeta/delta are critical mediators of epidermal growth factor receptor-induced carcinoma cell growth (PMID:20424164)
- Co-expression of E- and A-FABP is detected in cultured human aortic endothelial cells, which is the critical cellular component in the development of atherosclerosis. (PMID:20452069)
- Studies indicate that three of the ten mammalian FABPs identified to date (FABP3, FABP5, FABP7) are expressed in the brain. (PMID:20563994)
- These results validate the differential expressions of SOD2, S100A8 and FABP5 between mycosis fungoides tissues and normal skins. (PMID:20833513)
- The findings suggest a potential distinct role(s) of SNPs in FABP5 and FABP2 genes in T2DM in different populations. (PMID:21288588)
- The purpose of this study was to investigate the clinicopathological significance of FABP5 in breast cancer and to evaluate FABP5 as a prognostic marker and a possible novel therapeutic target in breast cancer. (PMID:21356353)
- while both serum A-FABP and E-FABP levels are associated with MetS, only A-FABP is significantly associated with increased risk of CAD in Chinese adults (PMID:21492859)
- High FABP5 is associated with pancreatic ductal adenocarcinoma. (PMID:22010213)
- The most significant discovery of the integrated validation is the down-regulation of FABP5 and PDCD4 in KRAS-activated human tumor bronchial epithelial cells. (PMID:22761399)
- FABP5 is significantly overexpressed in intrahepatic cholangiocarcinoma combined lymph node metastasis and is involved in cell proliferation and invasion (PMID:22825302)
- E-FABP levels in skin-strippings, but not in serum, were higher in psoriatic patients than in healthy individuals. E-FABP was abundant in patients not only in lesions but also in uninvolved skin. (PMID:23039948)
- E-FABP showed high exp ression in NSCLC, and the increased E-FABP expression may involved in the occurrence and development of NSCLC (PMID:23327868)
- E-FABP is highly expressed in psoriatic epidermis, and it is mainly localized in stratum spinosum. Psoriatic keratinocytes overexpress E-FABP as compared to the same population in normal epidermis. (PMID:23528210)
- Our findings establish that FABP5 is critical for mammary tumor development (PMID:23722546)
- Both C-FABP and PPARg are suitable as prognostic factors to predict the clinical outcome of prostatic cancer patients. (PMID:24189640)
- peripheral uptake of FA via capillary endothelial FABP4/5 is crucial for systemic metabolism and may establish FABP4/5 as potentially novel targets for the modulation of energy homeostasis. (PMID:24244493)
- Data indicate that fatty acid-binding protein 5 (FABP5) is tuned to selectively stimulate peroxisome proliferation-activated receptor beta/delta transactivation in response to specific fatty acids based on their structural features. (PMID:24692551)
- The frameshift and missense mutations in FABP3, FABP5, and FABP7 genes have been identified in schizophrenia and autism spectrum disorder in humans and in mouse behavioral studies. (PMID:25027319)
- CRABP-II and FABP5 expression patterns are neither related to the tumor grades nor correlated with RA sensitivity. (PMID:25797252)
- FABP5 may contribute to the airway remodeling and inflammation in asthma by fine-tuning the levels of CysLTs, which induce VEGF production. (PMID:26020772)
- Long chain fatty acids suppress the oncogenic properties of FABP5-expressing carcinoma cells in cultured cells. (PMID:26592976)
- silencing of Sp1, c-Myc or FABP5 expression led to a significant decrease in cell proliferation, indicating that up-regulation of FABP5 expression by Sp1 and c-Myc is critical for the proliferation of prostate cancer cells (PMID:26614767)
- the balance between FABP4 and FABP5 in endothelial cells may be important in regulation of angiogenic versus quiescent phenotypes in blood vessels. (PMID:26625874)
- FABP5 promoted VEGF expression and angiogenesis through PPARgamma which was activated by fatty acids transported by FABP5. (PMID:26814431)
- FABP5 is associated with increased subclinical atherosclerosis (PMID:27055964)
- A high expression ratio between FABP5 and CRABPII may be related to CP tumor recurrence and ATRA could be a potential therapeutic agent for CP chemotherapy. (PMID:27418530)
- FABP5 plays an important role in the carcinogenesis and metastasis of cervical cancer, and FABP5 may be a novel predictor for prognostic assessment of cervical cancer patients. (PMID:27644245)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fabp4b | ENSDARG00000002311 |
| danio_rerio | fabp4a | ENSDARG00000017299 |
| danio_rerio | rbp7a | ENSDARG00000091906 |
| danio_rerio | rbp5 | ENSDARG00000101481 |
| danio_rerio | ENSDARG00000109259 | |
| mus_musculus | Fabp5 | ENSMUSG00000027533 |
| rattus_norvegicus | Fabp5 | ENSRNOG00000049075 |
| rattus_norvegicus | ENSRNOG00000071720 | |
| drosophila_melanogaster | fabp | FBGN0037913 |
| caenorhabditis_elegans | WBGENE00002259 | |
| caenorhabditis_elegans | WBGENE00002260 |
Paralogs (15): RBP2 (ENSG00000114113), RBP1 (ENSG00000114115), FABP3 (ENSG00000121769), RBP5 (ENSG00000139194), CRABP2 (ENSG00000143320), FABP2 (ENSG00000145384), PMP2 (ENSG00000147588), RBP7 (ENSG00000162444), FABP1 (ENSG00000163586), FABP7 (ENSG00000164434), CRABP1 (ENSG00000166426), FABP6 (ENSG00000170231), FABP4 (ENSG00000170323), FABP12 (ENSG00000197416), FABP9 (ENSG00000205186)
Protein
Protein identifiers
Fatty acid-binding protein 5 — Q01469 (reviewed: Q01469)
Alternative names: Epidermal-type fatty acid-binding protein, Fatty acid-binding protein, epidermal, Psoriasis-associated fatty acid-binding protein homolog
All UniProt accessions (3): Q01469, E7DVW5, I6L8B7
UniProt curated annotations — full annotation on UniProt →
Function. Intracellular carrier for long-chain fatty acids and related active lipids, such as endocannabinoids, that regulate the metabolism and actions of the ligands they bind. In addition to the cytosolic transport, selectively delivers specific fatty acids from the cytosol to the nucleus, wherein they activate nuclear receptors. Delivers retinoic acid to the nuclear receptor peroxisome proliferator-activated receptor delta; which promotes proliferation and survival. May also serve as a synaptic carrier of endocannabinoid at central synapses and thus controls retrograde endocannabinoid signaling. Modulates inflammation by regulating PTGES induction via NF-kappa-B activation, and prostaglandin E2 (PGE2) biosynthesis during inflammation. May be involved in keratinocyte differentiation.
Subunit / interactions. Monomer. Homodimer.
Subcellular location. Cytoplasm. Nucleus. Synapse. Postsynaptic density. Secreted.
Tissue specificity. Keratinocytes; highly expressed in psoriatic skin. Expressed in brain gray matter.
Domain organisation. Forms a beta-barrel structure that accommodates the hydrophobic ligand in its interior.
Similarity. Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
RefSeq proteins (1): NP_001435* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000463 | Fatty_acid-bd | Domain |
| IPR000566 | Lipocln_cytosolic_FA-bd_dom | Domain |
| IPR012674 | Calycin | Homologous_superfamily |
| IPR031259 | ILBP | Family |
Pfam: PF00061
Catalyzed reactions (Rhea), 3 shown:
- (9Z)-octadecenoate(out) = (9Z)-octadecenoate(in) (RHEA:33655)
- hexadecanoate(out) = hexadecanoate(in) (RHEA:45256)
- (9Z,12Z)-octadecadienoate(out) = (9Z,12Z)-octadecadienoate(in) (RHEA:45264)
UniProt features (29 total): strand 11, binding site 5, modified residue 3, mutagenesis site 3, helix 3, initiator methionine 1, chain 1, disulfide bond 1, short sequence motif 1
Structure
Experimental structures (PDB)
17 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7G0E | X-RAY DIFFRACTION | 1.11 |
| 7G01 | X-RAY DIFFRACTION | 1.17 |
| 7G1Q | X-RAY DIFFRACTION | 1.24 |
| 7FY0 | X-RAY DIFFRACTION | 1.34 |
| 5HZ5 | X-RAY DIFFRACTION | 1.4 |
| 7G04 | X-RAY DIFFRACTION | 1.4 |
| 7FYD | X-RAY DIFFRACTION | 1.45 |
| 7G0B | X-RAY DIFFRACTION | 1.47 |
| 4LKP | X-RAY DIFFRACTION | 1.67 |
| 7FWI | X-RAY DIFFRACTION | 2 |
| 1B56 | X-RAY DIFFRACTION | 2.05 |
| 5UR9 | X-RAY DIFFRACTION | 2.2 |
| 7FXD | X-RAY DIFFRACTION | 2.44 |
| 4LKT | X-RAY DIFFRACTION | 2.57 |
| 4AZM | X-RAY DIFFRACTION | 2.75 |
| 4AZR | X-RAY DIFFRACTION | 2.95 |
| 1JJJ | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q01469-F1 | 96.46 | 0.96 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 43; 109; 129–131; 131; 131
Post-translational modifications (3): 131, 2, 17
Disulfide bonds (1): 120–127
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 24 | loss of ligand-induced nuclear import; when associated with a-33 and a-34. |
| 33 | loss of ligand-induced nuclear import; when associated with a-24 and a-34. |
| 34 | loss of ligand-induced nuclear import; when associated with a-24 and a-33. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-163560 | Triglyceride catabolism |
| R-HSA-5362517 | Signaling by Retinoic Acid |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-9725554 | Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin |
MSigDB gene sets: 509 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, REACTOME_TRIGLYCERIDE_CATABOLISM, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_CARBOHYDRATE_TRANSPORT, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLCHOLINE_METABOLIC_PROCESS, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_PHOSPHATIDYLCHOLINE_BIOSYNTHETIC_PROCESS, GOCC_SECRETORY_GRANULE, MODULE_151
GO Biological Process (16): glucose metabolic process (GO:0006006), lipid metabolic process (GO:0006629), phosphatidylcholine biosynthetic process (GO:0006656), epidermis development (GO:0008544), negative regulation of D-glucose transmembrane transport (GO:0010829), fatty acid transport (GO:0015908), long-chain fatty acid transport (GO:0015909), regulation of prostaglandin biosynthetic process (GO:0031392), positive regulation of peroxisome proliferator activated receptor signaling pathway (GO:0035360), glucose homeostasis (GO:0042593), regulation of sensory perception of pain (GO:0051930), retrograde trans-synaptic signaling by endocannabinoid (GO:0098921), regulation of retrograde trans-synaptic signaling by endocanabinoid (GO:0099178), positive regulation of cold-induced thermogenesis (GO:0120162), lipid transport across blood-brain barrier (GO:1990379), lipid transport (GO:0006869)
GO Molecular Function (6): retinoic acid binding (GO:0001972), long-chain fatty acid transmembrane transporter activity (GO:0005324), fatty acid binding (GO:0005504), lipid binding (GO:0008289), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (15): extracellular region (GO:0005576), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), postsynaptic density (GO:0014069), secretory granule membrane (GO:0030667), azurophil granule lumen (GO:0035578), synapse (GO:0045202), extracellular exosome (GO:0070062), glutamatergic synapse (GO:0098978), postsynaptic density, intracellular component (GO:0099092), postsynaptic cytosol (GO:0099524), obsolete extracellular space (GO:0005615)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Triglyceride metabolism | 1 |
| Signaling by Nuclear Receptors | 1 |
| Innate Immune System | 1 |
| Developmental Cell Lineages of the Integumentary System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| lipid transport | 2 |
| monocarboxylic acid binding | 2 |
| binding | 2 |
| hexose metabolic process | 1 |
| primary metabolic process | 1 |
| phosphatidylcholine metabolic process | 1 |
| glycerophospholipid biosynthetic process | 1 |
| tissue development | 1 |
| regulation of D-glucose transmembrane transport | 1 |
| negative regulation of transmembrane transport | 1 |
| D-glucose transmembrane transport | 1 |
| monocarboxylic acid transport | 1 |
| fatty acid transport | 1 |
| prostaglandin biosynthetic process | 1 |
| regulation of unsaturated fatty acid biosynthetic process | 1 |
| peroxisome proliferator activated receptor signaling pathway | 1 |
| regulation of peroxisome proliferator activated receptor signaling pathway | 1 |
| positive regulation of intracellular signal transduction | 1 |
| carbohydrate homeostasis | 1 |
| sensory perception of pain | 1 |
| regulation of sensory perception | 1 |
| retrograde trans-synaptic signaling by lipid | 1 |
| trans-synaptic signaling by endocannabinoid | 1 |
| retrograde trans-synaptic signaling by endocannabinoid | 1 |
| regulation of trans-synaptic signaling | 1 |
| positive regulation of multicellular organismal process | 1 |
| cold-induced thermogenesis | 1 |
| regulation of cold-induced thermogenesis | 1 |
| transport across blood-brain barrier | 1 |
| transport | 1 |
| lipid localization | 1 |
| retinoid binding | 1 |
| fatty acid transmembrane transporter activity | 1 |
| long-chain fatty acid transport | 1 |
| lipid binding | 1 |
| protein binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
2004 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FABP5 | PPARD | Q03181 | 978 |
| FABP5 | FAAH | O00519 | 891 |
| FABP5 | GOT2 | P00505 | 888 |
| FABP5 | S100A7 | P31151 | 770 |
| FABP5 | CD36 | P16671 | 744 |
| FABP5 | PPARG | P37231 | 740 |
| FABP5 | SCARB1 | Q8WTV0 | 737 |
| FABP5 | SCARB2 | Q14108 | 737 |
| FABP5 | NOTCH3 | Q9UM47 | 702 |
| FABP5 | PPARA | Q07869 | 700 |
| FABP5 | FABP6 | P51161 | 596 |
| FABP5 | RARA | P10276 | 572 |
| FABP5 | ESRRA | P11474 | 571 |
| FABP5 | FASN | P49327 | 571 |
| FABP5 | FN1 | P02751 | 532 |
IntAct
69 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| ASF1A | HAT1 | psi-mi:“MI:0914”(association) | 0.640 |
| ASF1B | HAT1 | psi-mi:“MI:0914”(association) | 0.640 |
| NASP | HAT1 | psi-mi:“MI:0914”(association) | 0.530 |
| CD5L | psi-mi:“MI:0915”(physical association) | 0.400 | |
| KSR1 | FBLL1 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| SLX4 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| BAZ2A | CSTA | psi-mi:“MI:0914”(association) | 0.350 |
| KDM3B | CPNE3 | psi-mi:“MI:0914”(association) | 0.350 |
| KRR1 | LGALS7 | psi-mi:“MI:0914”(association) | 0.350 |
| NEDD4 | HMGB1P1 | psi-mi:“MI:0914”(association) | 0.350 |
| NELFB | PRSS3 | psi-mi:“MI:0914”(association) | 0.350 |
| NELFCD | H1-2 | psi-mi:“MI:0914”(association) | 0.350 |
| NELFE | H1-2 | psi-mi:“MI:0914”(association) | 0.350 |
| PIWIL4 | CSTA | psi-mi:“MI:0914”(association) | 0.350 |
| RAD51 | CSTA | psi-mi:“MI:0914”(association) | 0.350 |
| TDRD5 | UBB | psi-mi:“MI:0914”(association) | 0.350 |
| TRIM24 | DDTL | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| TIFAB | DDX3X | psi-mi:“MI:0914”(association) | 0.350 |
| pipB2 | PSMD12 | psi-mi:“MI:0914”(association) | 0.350 |
| MSH2 | GGCT | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (173): FABP5 (Affinity Capture-MS), FABP5 (Affinity Capture-MS), AKR1B1 (Co-fractionation), ECI1 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation), FABP5 (Co-fractionation)
ESM2 similar proteins: A0A0K0MJ13, A0A0K0MJN3, A6YLM6, C4N147, O01812, O01814, O02772, O08716, O13008, O15540, O45035, O97788, P02689, P02690, P02691, P04117, P05413, P06768, P07483, P0C6G6, P10790, P11404, P15090, P24526, P29498, P41496, P41509, P48035, P50120, P50121, P51880, P55051, P55052, P55053, P70623, P80049, P86412, Q01469, Q02970, Q05423
Diamond homologs: A0A0K0MJ13, A0A0K0MJN3, A6NFH5, A6YLM6, A8MUU1, B7SUM8, C4N147, O01812, O01814, O02323, O02324, O02772, O08716, O13008, O15540, O42386, O45035, O76821, O97788, P02689, P02690, P02691, P02694, P02696, P04117, P05413, P06768, P07148, P07483, P09455, P0C6G6, P10790, P11404, P12710, P15090, P22935, P24526, P29373, P29498, P29762
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FABP5 | “up-regulates quantity” | “Fatty acid” | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 82 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| negative regulation of transcription elongation by RNA polymerase II | 5 | 52.5× | 3e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
25 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 17 |
| Likely benign | 0 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
890 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:81280650:T:C | F19L | 0.998 |
| 8:81280652:T:A | F19L | 0.998 |
| 8:81280652:T:G | F19L | 0.998 |
| 8:81283529:A:C | R81S | 0.998 |
| 8:81283529:A:T | R81S | 0.998 |
| 8:81283947:A:C | R109S | 0.997 |
| 8:81283947:A:T | R109S | 0.997 |
| 8:81280626:T:A | W11R | 0.996 |
| 8:81280626:T:C | W11R | 0.996 |
| 8:81283521:G:C | D79H | 0.996 |
| 8:81283528:G:C | R81T | 0.996 |
| 8:81284540:T:G | C127W | 0.996 |
| 8:81283946:G:C | R109T | 0.995 |
| 8:81284545:G:C | R129P | 0.995 |
| 8:81280628:G:C | W11C | 0.994 |
| 8:81280628:G:T | W11C | 0.994 |
| 8:81283458:A:C | S58R | 0.994 |
| 8:81283460:C:A | S58R | 0.994 |
| 8:81283460:C:G | S58R | 0.994 |
| 8:81283522:A:T | D79V | 0.994 |
| 8:81283933:A:C | S105R | 0.994 |
| 8:81283935:C:A | S105R | 0.994 |
| 8:81283935:C:G | S105R | 0.994 |
| 8:81284538:T:C | C127R | 0.994 |
| 8:81280664:G:A | M23I | 0.993 |
| 8:81280664:G:C | M23I | 0.993 |
| 8:81280664:G:T | M23I | 0.993 |
| 8:81283523:T:A | D79E | 0.993 |
| 8:81283523:T:G | D79E | 0.993 |
| 8:81283901:T:C | L94S | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000184253 (8:81281642 G>C), RS1000320624 (8:81280437 G>A,T), RS1001338971 (8:81284894 A>G), RS1001614661 (8:81281089 C>A), RS1001918089 (8:81280906 A>G,T), RS1003061798 (8:81283293 G>A,T), RS1003184640 (8:81282167 A>T), RS1003361203 (8:81282130 G>A,T), RS1003438724 (8:81283709 C>G), RS1003689084 (8:81282625 T>A), RS1003798540 (8:81281682 A>G), RS1004928546 (8:81283825 C>G,T), RS1005188612 (8:81279717 T>A), RS1005401500 (8:81282585 A>G), RS1006131560 (8:81284961 G>C)
Disease associations
OMIM: gene MIM:605168 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3674 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 713,838 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL8659 | OLEIC ACID | 2 | 713,838 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other protein — Fatty acid-binding proteins
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 13 [PMID: 17502136] | Inhibition | 8.7 | pKi |
Binding affinities (BindingDB)
314 measured of 369 human assays (369 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-methyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 10 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-methyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 10 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,4-dimethyl-6,7-dihydro-5H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 10 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[6-ethyl-3-(4-methyl-1,3-thiazol-2-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 10 nM | US-9604977: Bicyclic thiophenylamide compounds |
| US20250325529, ID PD154 | KD | 11 nM | US-20250325529: INHIBITORS OF FATTY ACID BINDING PROTEINS (FABPs), METHODS OF USE AND METHODS OF MAKING |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-ethyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 13 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[(6S)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-ethyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 13 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[5-cyclopropyl-3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4-methylthiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 16 nM | US-9353102: Non-annulated thiophenylamides |
| US20250325529, ID PD151 | KD | 16 nM | US-20250325529: INHIBITORS OF FATTY ACID BINDING PROTEINS (FABPs), METHODS OF USE AND METHODS OF MAKING |
| 2-[[(6R)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-ethyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 18 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]-4,4-dimethylcyclopentene-1-carboxylic acid | IC50 | 19 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[4,4-dimethyl-3-(3-methyl-1,2,4-oxadiazol-5-yl)-5,6-dihydrocyclopenta[b]thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-[4-(trifluoromethyl)-1,3-thiazol-2-yl]-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-[4-(trifluoromethyl)-1,3-thiazol-2-yl]-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-methyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[(6S)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-methyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[6,6-difluoro-3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[6,6-difluoro-3-(4-methyl-1,3-thiazol-2-yl)-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 20 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4,5-dimethylthiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 22 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[5-cyclopropyl-3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4-methylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 22 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[3-(4-methyl-1,3-thiazol-2-yl)-6-(trifluoromethyl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 22 nM | US-9604977: Bicyclic thiophenylamide compounds |
| US20250325529, ID PD152 | KD | 28 nM | US-20250325529: INHIBITORS OF FATTY ACID BINDING PROTEINS (FABPs), METHODS OF USE AND METHODS OF MAKING |
| 2-[[5-cyclopropyl-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4-methylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[4-cyclopropyl-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-5-methylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5-dimethylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[4-cyclopropyl-5-methyl-3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[5-cyclopropyl-4-methyl-3-(3-methyl-1,2,4-thiadiazol-5-yl)thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9353102: Non-annulated thiophenylamides |
| 3-[[3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-[4-(trifluoromethyl)-1,3-thiazol-2-yl]-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,4-dimethyl-6,7-dihydro-5H-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[5-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-3-thiatricyclo[5.2.1.02,6]deca-2(6),4-dien-4-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6,6-difluoro-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[6,6-difluoro-3-(4-methyl-1,3-thiazol-2-yl)-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[6,6-difluoro-3-(4-propan-2-yl-1,3-thiazol-2-yl)-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 30 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[5-cyclopropyl-4-methyl-3-(3-methyl-1,2,4-thiadiazol-5-yl)thiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 31 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[4,5-dimethyl-3-(3-methyl-1,2,4-thiadiazol-5-yl)thiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 31 nM | US-9353102: Non-annulated thiophenylamides |
| 3-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6-ethyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 32 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[(6S)-6-ethyl-3-(4-methyl-1,3-thiazol-2-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 32 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-6,6-difluoro-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclohexene-1-carboxylic acid | IC50 | 33 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 3-[[3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]bicyclo[2.2.2]oct-2-ene-2-carboxylic acid | IC50 | 34 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[5-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-3,4-dihydro-2H-thieno[2,3-b]pyran-6-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 34 nM | US-9604977: Bicyclic thiophenylamide compounds |
| 2-[[3-(3-cyclopropyl-1,2,4-thiadiazol-5-yl)-4,5-dimethylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 38 nM | US-9353102: Non-annulated thiophenylamides |
| 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-5,5-dimethyl-6,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid | IC50 | 38 nM | US-9604977: Bicyclic thiophenylamide compounds |
ChEMBL bioactivities
422 potent at pChembl≥5 of 488 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
PubChem BioAssay actives
159 with measured affinity, of 346 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[2,3-bis[(2-chlorophenyl)methoxy]phenyl]-2-oxoacetic acid | 268957: Binding affinity to human kFABP | ki | 0.0020 | uM |
| 2,3-bis[(2,4-dichloro-3-tritiophenyl)methoxy]benzoic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.0020 | uM |
| 2-[2,3-bis[(2-chlorophenyl)methoxy]phenyl]acetic acid | 268957: Binding affinity to human kFABP | ki | 0.0030 | uM |
| 2-[2,3-bis[(2-chlorophenyl)methoxy]phenyl]-2-methoxyacetic acid | 268957: Binding affinity to human kFABP | ki | 0.0090 | uM |
| 2-[1-(methoxymethyl)cyclopentyl]-6-pentyl-4-phenyl-3-(2H-tetrazol-5-yl)-5,6,7,8-tetrahydroquinoline | 1958767: Inhibition of human FABP5 | ic50 | 0.0200 | uM |
| [1-[4-(2-methyl-4-pyridinyl)-3-(2H-tetrazol-5-yl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]pyridin-2-yl]cyclopentyl]methanol | 1958767: Inhibition of human FABP5 | ic50 | 0.0300 | uM |
| (2S)-2-[2,3-bis[(2-chlorophenyl)methoxy]phenyl]-2-hydroxyacetic acid | 268957: Binding affinity to human kFABP | ki | 0.0330 | uM |
| 2-(1-methylcyclopentyl)-4-(2-methyl-4-pyridinyl)-3-(2H-tetrazol-5-yl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]pyridine | 1958767: Inhibition of human FABP5 | ic50 | 0.0400 | uM |
| 6-chloro-N,N-diethyl-7-fluoro-4-phenyl-3-(2H-tetrazol-5-yl)quinolin-2-amine | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.0510 | uM |
| 6-chloro-7-fluoro-4-phenyl-2-piperidin-1-yl-3-(2H-tetrazol-5-yl)quinoline | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.0620 | uM |
| N,N-diethyl-4-phenyl-3-(2H-tetrazol-5-yl)-6-(trifluoromethyl)quinolin-2-amine | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.0640 | uM |
| 2-cyclopentyl-6-methyl-4-(2-methyl-4-pyridinyl)-3-(2H-tetrazol-5-yl)-5,6,7,8-tetrahydroquinoline | 1958767: Inhibition of human FABP5 | ic50 | 0.0700 | uM |
| 6-chloro-7-fluoro-2-pentan-3-yl-4-phenyl-3-(2H-tetrazol-5-yl)quinoline | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.0800 | uM |
| 6-chloro-4-phenyl-2-piperidin-1-yl-3-(2H-tetrazol-5-yl)quinoline | 1322080: Displacement of Bodipy-labeled fatty acid from human N-terminal His6-tagged FABP5 (127 to 132 residues) expressed in Escherichia coli after 30 mins by TR-FRET assay | ki | 0.0860 | uM |
| 2-cyclohexyl-4-(2-methyl-4-pyridinyl)-3-(2H-tetrazol-5-yl)-6-(trifluoromethyl)-5,6,7,8-tetrahydroquinoline | 1958767: Inhibition of human FABP5 | ic50 | 0.0900 | uM |
| 4-phenyl-2-piperidin-1-yl-3-(2H-tetrazol-5-yl)-6-(trifluoromethyl)quinoline | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.0960 | uM |
| 6-chloro-8-methyl-4-phenyl-2-piperidin-1-ylquinoline-3-carboxylic acid | 1322080: Displacement of Bodipy-labeled fatty acid from human N-terminal His6-tagged FABP5 (127 to 132 residues) expressed in Escherichia coli after 30 mins by TR-FRET assay | ki | 0.1000 | uM |
| trans-(2S,4S)-3-[3-(2-oxo-1,3-dihydroindol-6-yl)phenoxy]carbonyl-2,4-diphenylcyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.1200 | uM |
| 6,8-dichloro-4-phenyl-2-piperidin-1-ylquinoline-3-carboxylic acid | 1322080: Displacement of Bodipy-labeled fatty acid from human N-terminal His6-tagged FABP5 (127 to 132 residues) expressed in Escherichia coli after 30 mins by TR-FRET assay | ki | 0.1200 | uM |
| 5-(6-chloro-4-phenyl-2-piperidin-1-ylquinolin-3-yl)-3H-1,3,4-oxadiazole-2-thione | 1322080: Displacement of Bodipy-labeled fatty acid from human N-terminal His6-tagged FABP5 (127 to 132 residues) expressed in Escherichia coli after 30 mins by TR-FRET assay | ki | 0.1330 | uM |
| 5-(6-chloro-4-phenyl-2-piperidin-1-ylquinolin-3-yl)-3H-1,3,4-oxadiazol-2-one | 1322080: Displacement of Bodipy-labeled fatty acid from human N-terminal His6-tagged FABP5 (127 to 132 residues) expressed in Escherichia coli after 30 mins by TR-FRET assay | ki | 0.1670 | uM |
| trans-(2S,4S)-2,4-diphenyl-3-[(1R,2S)-2-phenylcyclohexyl]oxycarbonylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.1800 | uM |
| 6-chloro-N-ethyl-N-methyl-4-phenyl-3-(2H-tetrazol-5-yl)quinolin-2-amine | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.1820 | uM |
| 6,8-dichloro-2-[ethyl(methyl)amino]-4-phenylquinoline-3-carboxylic acid | 1958768: Inhibition of FABP5 (unknown origin) | ic50 | 0.1830 | uM |
| trans-(2S,4S)-2,4-diphenyl-3-[(1S,2R)-2-phenylcyclohexyl]oxycarbonylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.2000 | uM |
| 3-[2-(5-ethyl-3,4-diphenylpyrazol-1-yl)phenyl]benzoic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.2400 | uM |
| (Z)-octadec-9-enoic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.2480 | uM |
| 2-[3-[2-(3-ethyl-4,5-diphenylfuran-2-yl)phenyl]phenoxy]acetic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.2900 | uM |
| trans-(2S,4S)-3-(2-cyano-5-phenylphenoxy)carbonyl-2,4-diphenylcyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.3200 | uM |
| trans-(2S,4S)-3-(2-cyano-5-phenylphenoxy)carbonyl-2,4-bis(2-methoxyphenyl)cyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.3300 | uM |
| 2-[3-[2-(5-ethyl-3,4-diphenylpyrazol-1-yl)phenyl]phenoxy]acetic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.3500 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148356: Binding affinity to human FABP5 incubated for 45 mins by Kinobead based pull down assay | kd | 0.3590 | uM |
| trans-(2S,4S)-3-[3-(1,3-benzodioxol-5-yl)phenoxy]carbonyl-2,4-diphenylcyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.3600 | uM |
| 4-[4-fluoro-2-[1-phenyl-5-[2-(trifluoromethyl)phenyl]pyrazol-3-yl]phenoxy]butanoic acid | 2082681: Binding affinity FABP5 (unknown origin) assessed as inhibition constant | ki | 0.4100 | uM |
| 2-[2-(1-benzofuran-5-yl)-3-chloroanilino]benzoic acid | 1648409: Displacement of 1,8-ANS from recombinant human 6His-tagged FABP5 expressed in Escherichia coli BL21 DE3 incubated for 15 mins followed by 1,8-ANS addition and measured after 3 mins by fluorescence based assay | ki | 0.4300 | uM |
| 2-[3-chloro-2-(1H-indazol-5-yl)anilino]benzoic acid | 1648409: Displacement of 1,8-ANS from recombinant human 6His-tagged FABP5 expressed in Escherichia coli BL21 DE3 incubated for 15 mins followed by 1,8-ANS addition and measured after 3 mins by fluorescence based assay | ki | 0.4900 | uM |
| 6-chloro-4-phenyl-2-piperidin-1-ylquinoline-3-carboxylic acid | 1949364: Inhibition of FABP5 (unknown origin) assessed as inhibition constant | ki | 0.4900 | uM |
| trans-(2R,4R)-3-[(2-cyano-5-phenylphenyl)carbamoyl]-2,4-diphenylcyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.5000 | uM |
| trans-(2S,4S)-2,4-bis(2-methoxyphenyl)-3-naphthalen-1-yloxycarbonylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.5500 | uM |
| 2-[3-[2-(5-ethyl-3,4-diphenylpyrazol-1-yl)phenyl]phenyl]-2-hydroxyacetic acid | 307909: Displacement of 1,8-ANS from eFABP by fluorescence based-assay | ki | 0.5500 | uM |
| 4-carbazol-9-ylbutanoic acid | 2082676: Inhibition of FABP5 (unknown origin) | ic50 | 0.5700 | uM |
| 2-(3-chloro-2-naphthalen-2-ylanilino)benzoic acid | 1648409: Displacement of 1,8-ANS from recombinant human 6His-tagged FABP5 expressed in Escherichia coli BL21 DE3 incubated for 15 mins followed by 1,8-ANS addition and measured after 3 mins by fluorescence based assay | ki | 0.6000 | uM |
| 2-[2-(2,1,3-benzoxadiazol-5-yl)-3-chloroanilino]benzoic acid | 1648409: Displacement of 1,8-ANS from recombinant human 6His-tagged FABP5 expressed in Escherichia coli BL21 DE3 incubated for 15 mins followed by 1,8-ANS addition and measured after 3 mins by fluorescence based assay | ki | 0.6000 | uM |
| Palmitic Acid | 1802832: Ligand Binding Assay from Article 10.1074/jbc.M113.514646: “Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor ß/d (FABP5-PPARß/d) signaling pathway.” | ki | 0.6700 | uM |
| trans-(2S,4S)-2,4-bis(2-methoxyphenyl)-3-[(1R,2S)-2-phenylcyclohexyl]oxycarbonylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.6800 | uM |
| (1S,2S,3R,6S)-4-(hydroxymethyl)-6-(octylamino)cyclohex-4-ene-1,2,3-triol | 1802832: Ligand Binding Assay from Article 10.1074/jbc.M113.514646: “Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor ß/d (FABP5-PPARß/d) signaling pathway.” | ki | 0.7000 | uM |
| trans-(2R,4R)-3-naphthalen-1-yloxycarbonyl-2,4-diphenylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.7100 | uM |
| trans-(2S,4S)-3-[3-(1,3-benzodioxol-5-yl)phenoxy]carbonyl-2,4-bis(2-methoxyphenyl)cyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.7200 | uM |
| trans-(2R,4R)-3-[[3-(1,3-benzodioxol-5-yl)phenyl]carbamoyl]-2,4-diphenylcyclobutane-1-carboxylic acid | 2014898: Displacement of fluorescent probe DAUDA from FABP5 (unknown origin) assessed as inhibition constant by fluorescence based microplate reader analysis | ki | 0.7600 | uM |
| trans-(2S,4S)-2,4-diphenyl-3-(2-phenylphenoxy)carbonylcyclobutane-1-carboxylic acid | 1404706: Displacement of DAUDA from recombinant human N-terminal His-tagged FABP5 expressed in Escherichia coli BL21(DE3) after 20 mins by fluorescence assay | ki | 0.7700 | uM |
CTD chemical–gene interactions
96 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, decreases methylation, affects cotreatment | 8 |
| sodium arsenite | affects expression, decreases expression, increases expression | 5 |
| bisphenol A | affects expression, decreases expression, decreases methylation | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation, increases expression, decreases expression | 3 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, decreases expression, increases expression | 3 |
| sodium arsenate | decreases expression, increases abundance | 2 |
| nickel sulfate | increases expression, decreases expression | 2 |
| chloropicrin | increases expression | 2 |
| bisphenol S | affects cotreatment, increases methylation, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases methylation, decreases expression | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Lead | affects binding, affects expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Tretinoin | increases expression, decreases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| 4-oxoretinoic acid | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | decreases expression, affects cotreatment, affects localization | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| terbufos | increases methylation | 1 |
| arsenite | affects binding, increases reaction | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| 2-bromopalmitate | increases abundance, increases palmitoylation, decreases reaction | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
ChEMBL screening assays
39 unique, capped per target: 39 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1102420 | Binding | Displacement of radiolabeled 1-anilinonaphthalene 8-sulfonic acid from EFABP expressed in Escherichia coli BL21 (DE3) by fluorescence spectrophotometry | Identification and characterization of a small molecule inhibitor of Fatty Acid binding proteins. — J Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1RS | Abcam HeLa FABP5 KO | Cancer cell line | Female |
| CVCL_E0YJ | Ubigene MDA-MB-231 FABP5 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.