FAF1-AS1

Summary

FAF1-AS1 (FAF1 antisense RNA 1, HGNC:40228) is a long non-coding RNA gene on chromosome 1p32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40228
Approved symbol	FAF1-AS1
Name	FAF1 antisense RNA 1
Location	1p32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225767
Ensembl biotype	lncRNA
Entrez	105378715
RNAcentral	URS0002A40B1C — lncRNA, 1511 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000424664, ENST00000641778, ENST00000686764, ENST00000754098, ENST00000754099, ENST00000754100, ENST00000754307, ENST00000754308, ENST00000754309, ENST00000754310, ENST00000754311, ENST00000754312, ENST00000754313, ENST00000754314, ENST00000754315, ENST00000754316

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424664 — 5 exons

Exon	Start	End
ENSE00001600162	50461469	50461496
ENSE00001606357	50469438	50469544
ENSE00001635636	50471061	50471150
ENSE00001697792	50470734	50470889
ENSE00001785960	50462192	50462313

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 91.69.

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.69	gold quality
corpus callosum	UBERON:0002336	87.95	gold quality
calcaneal tendon	UBERON:0003701	73.09	gold quality
bone marrow cell	CL:0002092	68.90	silver quality
ganglionic eminence	UBERON:0004023	68.05	gold quality
skeletal muscle tissue	UBERON:0001134	67.40	gold quality
right testis	UBERON:0004534	66.94	gold quality
left testis	UBERON:0004533	66.91	gold quality
testis	UBERON:0000473	66.61	gold quality
colonic epithelium	UBERON:0000397	65.83	silver quality
hindlimb stylopod muscle	UBERON:0004252	65.16	gold quality
tonsil	UBERON:0002372	63.17	silver quality
urinary bladder	UBERON:0001255	63.10	gold quality
bone marrow	UBERON:0002371	62.73	gold quality
cortex of kidney	UBERON:0001225	62.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.88	gold quality
adrenal tissue	UBERON:0018303	60.53	gold quality
monocyte	CL:0000576	59.90	gold quality
lymph node	UBERON:0000029	59.58	gold quality
primary visual cortex	UBERON:0002436	58.77	gold quality
prefrontal cortex	UBERON:0000451	58.66	gold quality
liver	UBERON:0002107	57.87	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.82	gold quality
kidney	UBERON:0002113	56.68	gold quality
gall bladder	UBERON:0002110	56.18	gold quality
substantia nigra	UBERON:0002038	55.87	gold quality
blood	UBERON:0000178	55.70	gold quality
muscle of leg	UBERON:0001383	55.58	gold quality
islet of Langerhans	UBERON:0000006	55.54	gold quality
sural nerve	UBERON:0015488	55.52	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.37

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.