FAHD1
gene geneOn this page
Also known as DKFZP566J2046
Summary
FAHD1 (FAH domain containing oxaloacetate decarboxylase 1, HGNC:14169) is a protein-coding gene on chromosome 16p13.3, encoding Oxaloacetate tautomerase FAHD1, mitochondrial (Q6P587). Tautomerase that converts enol-oxaloacetate, a strong inhibitor of succinate dehydrogenase, to the physiological keto form of oxaloacetate.
Enables hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances; oxaloacetate decarboxylase activity; and oxaloacetate tautomerase activity. Involved in oxaloacetate metabolic process. Located in cytosol; mitochondrion; and nucleoplasm.
Source: NCBI Gene 81889 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 76 total — 3 pathogenic, 2 likely-pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_031208
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14169 |
| Approved symbol | FAHD1 |
| Name | FAH domain containing oxaloacetate decarboxylase 1 |
| Location | 16p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP566J2046 |
| Ensembl gene | ENSG00000180185 |
| Ensembl biotype | protein_coding |
| OMIM | 616320 |
| Entrez | 81889 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000382666, ENST00000382668, ENST00000427358
RefSeq mRNA: 3 — MANE Select: NM_031208
NM_001018104, NM_001142398, NM_031208
CCDS: CCDS10448, CCDS32367, CCDS45380
Canonical transcript exons
ENST00000427358 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003978179 | 1827206 | 1828910 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 99.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.3709 / max 132.9588, expressed in 1787 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 152136 | 17.5434 | 1786 |
| 152135 | 0.8275 | 534 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| kidney epithelium | UBERON:0004819 | 99.10 | gold quality |
| ileal mucosa | UBERON:0000331 | 96.34 | gold quality |
| pancreatic ductal cell | CL:0002079 | 96.12 | gold quality |
| jejunal mucosa | UBERON:0000399 | 96.10 | gold quality |
| colonic mucosa | UBERON:0000317 | 94.71 | gold quality |
| endothelial cell | CL:0000115 | 94.56 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 94.46 | gold quality |
| jejunum | UBERON:0002115 | 94.22 | gold quality |
| duodenum | UBERON:0002114 | 94.15 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 93.85 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 93.65 | gold quality |
| renal medulla | UBERON:0000362 | 93.30 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 93.29 | gold quality |
| gingival epithelium | UBERON:0001949 | 92.29 | gold quality |
| kidney | UBERON:0002113 | 92.28 | gold quality |
| vastus lateralis | UBERON:0001379 | 92.23 | gold quality |
| gingiva | UBERON:0001828 | 91.85 | gold quality |
| penis | UBERON:0000989 | 91.83 | gold quality |
| liver | UBERON:0002107 | 91.56 | gold quality |
| adult organism | UBERON:0007023 | 91.42 | gold quality |
| heart right ventricle | UBERON:0002080 | 91.22 | gold quality |
| quadriceps femoris | UBERON:0001377 | 91.21 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 90.88 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 90.61 | gold quality |
| amniotic fluid | UBERON:0000173 | 90.46 | gold quality |
| body of tongue | UBERON:0011876 | 90.35 | gold quality |
| superior surface of tongue | UBERON:0007371 | 90.21 | gold quality |
| tongue | UBERON:0001723 | 90.01 | gold quality |
| pericardium | UBERON:0002407 | 89.88 | gold quality |
| biceps brachii | UBERON:0001507 | 89.76 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-10 | yes | 109.84 |
| E-ANND-3 | yes | 9.33 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
48 targeting FAHD1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-4420 | 99.82 | 70.08 | 1624 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-181B-2-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-181B-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-8076 | 99.78 | 68.52 | 1170 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-486-5P | 99.51 | 70.39 | 707 |
| HSA-MIR-4708-3P | 99.51 | 67.99 | 870 |
| HSA-MIR-5683 | 99.36 | 68.59 | 2083 |
| HSA-MIR-584-3P | 99.35 | 67.69 | 1082 |
| HSA-MIR-548V | 99.29 | 69.47 | 1157 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-4784 | 99.15 | 67.41 | 1733 |
| HSA-MIR-7160-5P | 99.11 | 67.17 | 2207 |
| HSA-MIR-4324 | 99.04 | 70.14 | 1569 |
Literature-anchored findings (GeneRIF, showing 8)
- identified mammalian FAHD1 as a novel mitochondrial enzyme with acylpyruvate hydrolase activity. (PMID:21878618)
- Based on molecular modeling and subsequent biochemical investigations, the study identified FAHD1 as a eukaryotic oxaloacetate decarboxylase enzyme. (PMID:25575590)
- we recently identified human FAH domain containing protein-1 (FAHD1) as the first eukaryotic oxaloacetate decarboxylase..these data establish a role of fahd-1 to maintain mitochondrial function and consequently physical activity (PMID:26266933)
- The results indicate that FAHD1 is required for mitochondrial function in human cells and provide additional support to the growing evidence that mitochondrial dysfunction can induce cellular senescence by metabolic alterations independent of the DNA damage response pathway. (PMID:28286170)
- genetic inactivation of FAHD1 in human cells induces a specific form of cellular senescence. (PMID:30055189)
- Data indicate that FAH domain-containing protein 1 (FAHD1) is a mitochondrial protein displaying both acylpyruvate hydrolase (ApH) and oxaloacetate decarboxylase (ODx) activity. (PMID:30348641)
- Structural and functional comparison of fumarylacetoacetate domain containing protein 1 in human and mouse. (PMID:32068790)
- Mitochondrial enzyme FAHD1 reduces ROS in osteosarcoma. (PMID:38649439)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fahd1 | ENSDARG00000031657 |
| mus_musculus | Fahd1 | ENSMUSG00000045316 |
| rattus_norvegicus | Fahd1 | ENSRNOG00000014727 |
| caenorhabditis_elegans | WBGENE00022798 |
Paralogs (3): FAH (ENSG00000103876), FAHD2A (ENSG00000115042), FAHD2B (ENSG00000144199)
Protein
Protein identifiers
Oxaloacetate tautomerase FAHD1, mitochondrial — Q6P587 (reviewed: Q6P587)
Alternative names: Acylpyruvase FAHD1, Fumarylacetoacetate hydrolase domain-containing protein 1, Oxaloacetate decarboxylase, YisK-like protein
All UniProt accessions (1): Q6P587
UniProt curated annotations — full annotation on UniProt →
Function. Tautomerase that converts enol-oxaloacetate, a strong inhibitor of succinate dehydrogenase, to the physiological keto form of oxaloacetate. It is thereby required to maximize aerobic respiration efficiency by preventing succinate dehydrogenase inhibition. Also acts as a weak oxaloacetate decarboxylase (ODx), catalyzing the decarboxylation of oxaloacetate (OAA) to pyruvate and CO(2), and as such is likely a regulatory enzyme in the TCA cycle. Also displays acylpyruvase activity, being able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro. Exhibits only a weak hydrolase activity on methylacetopyruvate and acetylacetone, and no activity toward acetoacetyl-CoA.
Subunit / interactions. Homodimer.
Subcellular location. Mitochondrion. Cytoplasm. Cytosol.
Tissue specificity. Ubiquitous (at protein level).
Activity regulation. Oxaloacetate decarboxylation is competitively inhibited by oxalate.
Cofactor. Requires a divalent metal cation for activity. Shows the highest activity in the presence of Mg(2+), followed by Mn(2+), whereas only weak activity is observed in the presence of Ca(2+) and Zn(2+).
Miscellaneous. Produced by alternative initiation. Based on proteomic data.
Similarity. Belongs to the FAH family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6P587-4 | 4 | yes |
| Q6P587-1 | 1 | |
| Q6P587-2 | 2 | |
| Q6P587-3 | 3 |
RefSeq proteins (3): NP_001018114, NP_001135870, NP_112485* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011234 | Fumarylacetoacetase-like_C | Domain |
| IPR036663 | Fumarylacetoacetase_C_sf | Homologous_superfamily |
Pfam: PF01557
Enzyme classification (BRENDA):
- EC 3.7.1.5 — acylpyruvate hydrolase (BRENDA: 8 organisms, 16 substrates, 53 inhibitors, 12 Km, 0 kcat entries)
- EC 4.1.1.112 — oxaloacetate decarboxylase (BRENDA: 26 organisms, 29 substrates, 82 inhibitors, 30 Km, 6 kcat entries)
Substrate kinetics (BRENDA)
10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| OXALOACETATE | 0.0003–20.7 | 25 |
| ACETYLPYRUVATE | 0.0046–0.0819 | 6 |
| OXALOACETATE | 0.04–0.043 | 2 |
| 2,4-DIOXOHEPTANOATE | 0.007 | 1 |
| 2,4-DIOXOHEXANOATE | 0.007 | 1 |
| 2,4-DIOXOVALERATE | 0.011 | 1 |
| 3-FORMYLPYRUVATE | 0.002 | 1 |
| 3-METHYLOXALOACETATE | 0.63 | 1 |
| CO2 | 1 | 1 |
| PYRUVATE | 3.3 | 1 |
Catalyzed reactions (Rhea), 5 shown:
- oxaloacetate + H(+) = pyruvate + CO2 (RHEA:15641)
- oxaloacetate = enol-oxaloacetate (RHEA:16021)
- acetylpyruvate + H2O = acetate + pyruvate + H(+) (RHEA:16097)
- a 3-acylpyruvate + H2O = a carboxylate + pyruvate + H(+) (RHEA:19009)
- 3-fumarylpyruvate + H2O = fumarate + pyruvate + H(+) (RHEA:26168)
UniProt features (47 total): strand 15, helix 11, binding site 6, mutagenesis site 4, modified residue 3, splice variant 3, transit peptide 1, chain 1, sequence variant 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6FOH | X-RAY DIFFRACTION | 1.56 |
| 6FOG | X-RAY DIFFRACTION | 1.94 |
| 1SAW | X-RAY DIFFRACTION | 2.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6P587-F1 | 95.96 | 0.91 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 22; 68; 70; 99; 120; 189
Post-translational modifications (3): 112, 37, 110
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 27 | loss of acetylpyruvate hydrolase activity, while moderate decrease in oxaloacetate decarboxylase activity. |
| 30 | loss of acetylpyruvate hydrolase activity, while moderate decrease in oxaloacetate decarboxylase activity. |
| 99–103 | loss of oxaloacetate tautomerase, oxaloacetate decarboxylase and acetylpyruvate hydrolase activities. |
| 120 | loss of both oxaloacetate decarboxylase and acetylpyruvate hydrolase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-70268 | Pyruvate metabolism |
MSigDB gene sets: 124 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_DN, GOBP_OXALOACETATE_METABOLIC_PROCESS, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, WEI_MYCN_TARGETS_WITH_E_BOX, HNF4_DR1_Q3, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, SANSOM_APC_TARGETS_DN, MODULE_95, TGGAAA_NFAT_Q4_01, REACTOME_PYRUVATE_METABOLISM, GOCC_MITOCHONDRIAL_MATRIX, NIKOLSKY_BREAST_CANCER_16P13_AMPLICON, GOMF_CARBOXY_LYASE_ACTIVITY, GOMF_CARBON_CARBON_LYASE_ACTIVITY, GOMF_INTRAMOLECULAR_OXIDOREDUCTASE_ACTIVITY
GO Biological Process (2): oxaloacetate metabolic process (GO:0006107), carboxylic acid metabolic process (GO:0019752)
GO Molecular Function (11): oxaloacetate decarboxylase activity (GO:0008948), acetylpyruvate hydrolase activity (GO:0018773), fumarylpyruvate hydrolase activity (GO:0034545), metal ion binding (GO:0046872), acylpyruvate hydrolase activity (GO:0047621), oxaloacetate tautomerase activity (GO:0050163), catalytic activity (GO:0003824), protein binding (GO:0005515), hydrolase activity (GO:0016787), lyase activity (GO:0016829), isomerase activity (GO:0016853)
GO Cellular Component (5): nucleoplasm (GO:0005654), mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Aerobic respiration and respiratory electron transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| hydrolase activity, acting on carbon-carbon bonds, in ketonic substances | 3 |
| catalytic activity | 3 |
| cellular anatomical structure | 3 |
| cytoplasm | 2 |
| dicarboxylic acid metabolic process | 1 |
| oxoacid metabolic process | 1 |
| carboxy-lyase activity | 1 |
| cation binding | 1 |
| intramolecular oxidoreductase activity, interconverting keto- and enol-groups | 1 |
| molecular_function | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1672 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FAHD1 | FAH | P16930 | 742 |
| FAHD1 | CLUH | O75153 | 608 |
| FAHD1 | PNPT1 | Q8TCS8 | 526 |
| FAHD1 | NDUFS6 | O75380 | 522 |
| FAHD1 | BRICD5 | Q6PL45 | 506 |
| FAHD1 | NUBP2 | Q9Y5Y2 | 479 |
| FAHD1 | CPT2 | P23786 | 475 |
| FAHD1 | RNF151 | Q2KHN1 | 437 |
| FAHD1 | ADM2 | Q7Z4H4 | 412 |
| FAHD1 | PC | P11498 | 411 |
| FAHD1 | IDNK | Q5T6J7 | 395 |
| FAHD1 | IL17RC | Q8NAC3 | 383 |
| FAHD1 | CASKIN1 | Q8WXD9 | 368 |
| FAHD1 | DNAJC14 | Q6Y2X3 | 359 |
| FAHD1 | PHF3 | Q92576 | 347 |
| FAHD1 | NT5DC1 | Q5TFE4 | 347 |
IntAct
18 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NDUFS6 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| FAHD1 | CLUH | psi-mi:“MI:0914”(association) | 0.530 |
| FAHD1 | rep | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLPP1 | FAHD1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| JUN | psi-mi:“MI:0914”(association) | 0.350 | |
| JUN | TPM3 | psi-mi:“MI:0914”(association) | 0.350 |
| MME | psi-mi:“MI:0914”(association) | 0.350 | |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| K14 | MAP2K7 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| SERBP1 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| FAHD1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| COL10A1 | PLOD2 | psi-mi:“MI:0914”(association) | 0.350 |
| EXOSC4 | FAHD1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (190): UBR3 (Affinity Capture-MS), CPT2 (Affinity Capture-MS), PNPT1 (Affinity Capture-MS), CLUH (Affinity Capture-MS), DHTKD1 (Affinity Capture-MS), FAHD1 (Affinity Capture-MS), FAHD1 (Affinity Capture-MS), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation), FAHD1 (Co-fractionation)
ESM2 similar proteins: A0B3M8, A4JPX9, A6TAC6, A7ZI97, A7ZWZ7, A9ALD1, B1K3Y3, B1LIN5, B1Z1Y2, B2JQV8, B4EKX6, B5Z2Q5, B7L506, B7M2Z8, B7MPB7, B7N8Q7, B7NK05, C1DRI8, F1MLX0, I6Y276, O06724, O86042, P23107, P23149, P42270, P49156, P76004, P77608, Q0B628, Q10B63, Q13VU0, Q1BJJ1, Q1NEI7, Q2KIB0, Q39BA7, Q3Z556, Q47GC8, Q47HM0, Q49KF9, Q5RCX5
Diamond homologs: A0A3G9JYJ6, A0B3M8, A3AJ77, A9ALD1, B1K3Y3, B1Z1Y2, B2RYW9, B4EKX6, F1MLX0, I6Y276, O06724, O28058, O58377, O86042, P34673, P37352, Q0B628, Q0QFQ3, Q10B63, Q1BJJ1, Q1NEI7, Q2FIA7, Q2FZT4, Q2HJ98, Q2KIB0, Q2YWW3, Q39BA7, Q3TC72, Q46978, Q49WA8, Q4L4Y4, Q54BF3, Q59050, Q5HHB6, Q5HQJ3, Q5RCX5, Q5RDW0, Q6AYQ8, Q6GAV8, Q6GIC0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
76 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 2 |
| Uncertain significance | 59 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2078114 | NM_001163560.3(MEIOB):c.1207_1208del (p.Leu403fs) | Pathogenic |
| 2691779 | NM_001163560.3(MEIOB):c.1218G>A (p.Thr406=) | Pathogenic |
| 58604 | GRCh38/hg38 16p13.3(chr16:1816283-2020966)x3 | Pathogenic |
| 2081185 | NM_001163560.3(MEIOB):c.1035-1G>A | Likely pathogenic |
| 2691781 | NM_001163560.3(MEIOB):c.1072_1073del (p.Met358fs) | Likely pathogenic |
SpliceAI
614 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:1834363:CGAA:C | acceptor_gain | 1.0000 |
| 16:1834367:C:CC | acceptor_gain | 1.0000 |
| 16:1837782:A:AC | donor_gain | 1.0000 |
| 16:1837783:C:CC | donor_gain | 1.0000 |
| 16:1837806:T:A | donor_gain | 1.0000 |
| 16:1839238:T:TA | donor_gain | 1.0000 |
| 16:1839285:T:TA | donor_gain | 1.0000 |
| 16:1834362:ACGAA:A | acceptor_gain | 0.9900 |
| 16:1834363:CGAAC:C | acceptor_gain | 0.9900 |
| 16:1834365:AACT:A | acceptor_loss | 0.9900 |
| 16:1834381:A:T | acceptor_gain | 0.9900 |
| 16:1837802:T:TA | donor_gain | 0.9900 |
| 16:1839439:C:CC | acceptor_gain | 0.9900 |
| 16:1834365:AA:A | acceptor_gain | 0.9800 |
| 16:1834367:C:CG | acceptor_loss | 0.9800 |
| 16:1834368:T:A | acceptor_loss | 0.9800 |
| 16:1834364:GAA:G | acceptor_gain | 0.9700 |
| 16:1834370:C:CT | acceptor_gain | 0.9700 |
| 16:1834380:C:CT | acceptor_gain | 0.9700 |
| 16:1839286:C:A | donor_gain | 0.9600 |
| 16:1834371:G:T | acceptor_gain | 0.9500 |
| 16:1839239:C:A | donor_gain | 0.9400 |
| 16:1839434:TGGAA:T | acceptor_gain | 0.9400 |
| 16:1837779:CTAA:C | donor_gain | 0.9300 |
| 16:1839438:ACT:A | acceptor_gain | 0.9300 |
| 16:1839295:C:CT | donor_gain | 0.9200 |
| 16:1839296:T:TT | donor_gain | 0.9200 |
| 16:1839440:T:A | acceptor_gain | 0.9200 |
| 16:1839437:AACTG:A | acceptor_gain | 0.9100 |
| 16:1839250:TTTA:T | donor_loss | 0.9000 |
AlphaMissense
1468 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:1827362:T:C | F45L | 0.996 |
| 16:1827364:C:A | F45L | 0.996 |
| 16:1827364:C:G | F45L | 0.996 |
| 16:1827295:C:G | C22W | 0.995 |
| 16:1827534:A:T | D102V | 0.995 |
| 16:1827598:G:C | K123N | 0.995 |
| 16:1827598:G:T | K123N | 0.995 |
| 16:1827370:G:C | K47N | 0.994 |
| 16:1827370:G:T | K47N | 0.994 |
| 16:1827616:C:G | C129W | 0.994 |
| 16:1827534:A:C | D102A | 0.993 |
| 16:1827584:T:A | W119R | 0.993 |
| 16:1827584:T:C | W119R | 0.993 |
| 16:1827599:A:C | S124R | 0.992 |
| 16:1827601:C:A | S124R | 0.992 |
| 16:1827601:C:G | S124R | 0.992 |
| 16:1827623:A:C | S132R | 0.992 |
| 16:1827625:C:A | S132R | 0.992 |
| 16:1827625:C:G | S132R | 0.992 |
| 16:1827307:C:A | N26K | 0.991 |
| 16:1827307:C:G | N26K | 0.991 |
| 16:1827529:C:G | C100W | 0.991 |
| 16:1827527:T:C | C100R | 0.990 |
| 16:1827533:G:C | D102H | 0.990 |
| 16:1827535:T:A | D102E | 0.990 |
| 16:1827535:T:G | D102E | 0.990 |
| 16:1827597:A:T | K123M | 0.990 |
| 16:1827602:T:C | F125L | 0.990 |
| 16:1827604:C:A | F125L | 0.990 |
| 16:1827604:C:G | F125L | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000004031 (16:1828829 G>A,T), RS1000022022 (16:1836988 C>G), RS1000056645 (16:1828977 C>T), RS1000399477 (16:1832012 A>G), RS1000418949 (16:1832450 C>T), RS1000472736 (16:1838682 T>G), RS1000653945 (16:1837831 C>T), RS1001209037 (16:1832468 G>C), RS1001420799 (16:1835184 G>A), RS1001581234 (16:1832495 A>G,T), RS1001632023 (16:1832719 A>G), RS1001731899 (16:1829971 C>T), RS1002028204 (16:1838394 T>C), RS1002189383 (16:1825788 G>A), RS1002202691 (16:1827134 C>A,G,T)
Disease associations
OMIM: gene MIM:616320 | disease phenotypes: MIM:620686, MIM:617706
GenCC curated gene-disease
Mondo (2): premature ovarian failure 23 (MONDO:0958035), spermatogenic failure 22 (MONDO:0054726)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523346 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 3 |
| sodium arsenite | decreases expression | 2 |
| ochratoxin A | decreases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| trichostatin A | affects expression, decreases reaction | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| gambierol | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Cadmium | increases expression | 1 |
| Carteolol | affects expression | 1 |
| Coal | decreases expression, increases abundance | 1 |
| Ivermectin | decreases expression | 1 |
| Nickel | affects expression, decreases reaction | 1 |
| Phenobarbital | affects expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Rotenone | decreases expression | 1 |
| Smoke | increases abundance, decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Urethane | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4418435 | Binding | Inhibition of wild-type recombinant N-terminal His6 and S-tagged full-length human FAHD1 expressed in Escherichia coli using oxaloacetate as substrate by photometric analysis | Uses of fahd1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): premature ovarian failure 23, spermatogenic failure 22