FAM106C

Summary

FAM106C (family with sequence similarity 106 member C, HGNC:38396) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38396
Approved symbol	FAM106C
Name	family with sequence similarity 106 member C
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000288235
Ensembl biotype	lncRNA
Entrez	100129396
RNAcentral	URS000212314B — lncRNA, 1623 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000582212

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000582212 — 1 exons

Exon	Start	End
ENSE00002705061	16788879	16790501

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 84.39.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.18	gold quality
bone marrow cell	CL:0002092	71.60	silver quality
colonic epithelium	UBERON:0000397	70.60	silver quality
right hemisphere of cerebellum	UBERON:0014890	68.49	gold quality
bone marrow	UBERON:0002371	67.87	gold quality
cortical plate	UBERON:0005343	67.60	gold quality
cerebellar hemisphere	UBERON:0002245	65.23	gold quality
cerebellum	UBERON:0002037	65.17	gold quality
cerebellar cortex	UBERON:0002129	65.16	gold quality
skeletal muscle tissue	UBERON:0001134	62.95	gold quality
ventricular zone	UBERON:0003053	61.63	gold quality
ganglionic eminence	UBERON:0004023	61.31	gold quality
superior frontal gyrus	UBERON:0002661	60.58	gold quality
body of pancreas	UBERON:0001150	60.38	gold quality
descending thoracic aorta	UBERON:0002345	60.08	gold quality
corpus callosum	UBERON:0002336	59.13	gold quality
right lung	UBERON:0002167	58.91	gold quality
body of uterus	UBERON:0009853	58.67	gold quality
gastrocnemius	UBERON:0001388	58.22	gold quality
right atrium auricular region	UBERON:0006631	58.19	gold quality
muscle of leg	UBERON:0001383	57.89	gold quality
pancreas	UBERON:0001264	57.59	gold quality
endometrium	UBERON:0001295	57.18	gold quality
monocyte	CL:0000576	57.02	gold quality
uterine cervix	UBERON:0000002	56.92	gold quality
left ovary	UBERON:0002119	56.78	gold quality
ovary	UBERON:0000992	56.61	gold quality
heart	UBERON:0000948	56.39	gold quality
primary visual cortex	UBERON:0002436	56.20	gold quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.