FAM13A-AS1

Summary

FAM13A-AS1 (FAM13A antisense RNA 1, HGNC:19370) is a long non-coding RNA gene on chromosome 4q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19370
Approved symbol	FAM13A-AS1
Name	FAM13A antisense RNA 1
Location	4q22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	NCRNA00039
Ensembl gene	ENSG00000248019
Ensembl biotype	lncRNA
OMIM	613300
Entrez	285512
RNAcentral	URS000024BB67 — lncRNA, 3210 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000500765, ENST00000511543, ENST00000652855, ENST00000659507, ENST00000667757, ENST00000668537

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500765 — 5 exons

Exon	Start	End
ENSE00001968394	88708622	88710265
ENSE00001974942	88711855	88712017
ENSE00001975768	88727835	88730103
ENSE00001984732	88723209	88723315
ENSE00001988456	88722151	88722344

Expression profiles

Bgee: expression breadth ubiquitous, 182 present calls, max score 90.18.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar hemisphere	UBERON:0002245	90.18	gold quality
cerebellar cortex	UBERON:0002129	90.08	gold quality
right hemisphere of cerebellum	UBERON:0014890	90.05	gold quality
cerebellum	UBERON:0002037	88.57	gold quality
blood	UBERON:0000178	88.17	gold quality
granulocyte	CL:0000094	85.13	gold quality
right lung	UBERON:0002167	84.60	gold quality
spleen	UBERON:0002106	83.78	gold quality
bone marrow cell	CL:0002092	82.39	gold quality
monocyte	CL:0000576	82.21	gold quality
sural nerve	UBERON:0015488	82.01	gold quality
leukocyte	CL:0000738	81.61	gold quality
skin of leg	UBERON:0001511	81.38	gold quality
mucosa of stomach	UBERON:0001199	81.31	gold quality
skin of abdomen	UBERON:0001416	81.04	gold quality
apex of heart	UBERON:0002098	80.44	gold quality
calcaneal tendon	UBERON:0003701	79.95	gold quality
tibial nerve	UBERON:0001323	79.56	gold quality
upper lobe of left lung	UBERON:0008952	79.55	gold quality
small intestine Peyer’s patch	UBERON:0003454	79.45	gold quality
lower esophagus mucosa	UBERON:0035834	79.35	gold quality
zone of skin	UBERON:0000014	78.92	gold quality
gastrocnemius	UBERON:0001388	78.26	gold quality
muscle of leg	UBERON:0001383	78.03	gold quality
metanephros cortex	UBERON:0010533	77.91	gold quality
colonic epithelium	UBERON:0000397	77.73	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.49	gold quality
left uterine tube	UBERON:0001303	77.16	gold quality
endocervix	UBERON:0000458	77.05	gold quality
upper lobe of lung	UBERON:0008948	77.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.