FAM239A

Summary

FAM239A (family with sequence similarity 239 member A, HGNC:53414) is a long non-coding RNA gene on chromosome Xp22.33.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53414
Approved symbol	FAM239A
Name	family with sequence similarity 239 member A
Location	Xp22.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234449
Entrez	101930105

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1003710901 (X:3866977 C>T), RS1004001365 (X:3867514 A>G), RS1004384427 (X:3869072 G>A), RS1004498915 (X:3867591 G>A), RS1007846197 (X:3882539 C>T), RS1008760 (X:3853313 G>A,C,T), RS1010889157 (X:3867420 T>C,G), RS1011240230 (X:3882717 T>G), RS1013343287 (X:3867234 CTT>C), RS1017182490 (X:3867612 C>T), RS1017639576 (X:3869115 C>T), RS1019583373 (X:3872466 G>C), RS1021475394 (X:3882743 G>C), RS1023706821 (X:3866931 C>T), RS1028008095 (X:3872168 C>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.