FAM41C

Summary

FAM41C (family with sequence similarity 41 member C, HGNC:27635) is a long non-coding RNA gene on chromosome 1p36.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27635
Approved symbol	FAM41C
Name	family with sequence similarity 41 member C
Location	1p36.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230368
Ensembl biotype	lncRNA
Entrez	284593
RNAcentral	URS000075CEA9 — lncRNA, 1779 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000427857, ENST00000432963, ENST00000446136, ENST00000745834, ENST00000745835, ENST00000745836, ENST00000745837, ENST00000745838, ENST00000745839, ENST00000745840, ENST00000745841, ENST00000745842, ENST00000745843, ENST00000745844, ENST00000745845, ENST00000745846, ENST00000745847, ENST00000745848, ENST00000745849, ENST00000745850, ENST00000745851, ENST00000745852, ENST00000745853, ENST00000745854, ENST00000745855, ENST00000745856, ENST00000745857, ENST00000745858, ENST00000745859

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427857 — 3 exons

Exon	Start	End
ENSE00001634033	875040	875155
ENSE00004086107	868056	868675
ENSE00004086115	876746	876928

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 86.72.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.72	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.97	silver quality
bone marrow cell	CL:0002092	77.07	gold quality
bone marrow	UBERON:0002371	75.15	gold quality
skeletal muscle tissue	UBERON:0001134	73.08	gold quality
sural nerve	UBERON:0015488	70.53	gold quality
superior frontal gyrus	UBERON:0002661	70.47	gold quality
colonic epithelium	UBERON:0000397	69.36	silver quality
blood	UBERON:0000178	69.29	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.55	gold quality
primary visual cortex	UBERON:0002436	68.39	gold quality
tonsil	UBERON:0002372	68.31	gold quality
cortical plate	UBERON:0005343	68.14	gold quality
granulocyte	CL:0000094	67.89	gold quality
ganglionic eminence	UBERON:0004023	66.76	gold quality
muscle of leg	UBERON:0001383	66.22	gold quality
gastrocnemius	UBERON:0001388	66.15	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	64.87	gold quality
adrenal tissue	UBERON:0018303	64.62	gold quality
placenta	UBERON:0001987	64.51	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.50	gold quality
vermiform appendix	UBERON:0001154	64.24	gold quality
ventricular zone	UBERON:0003053	63.55	gold quality
right adrenal gland cortex	UBERON:0035827	63.55	gold quality
cerebellar cortex	UBERON:0002129	63.33	gold quality
cerebellum	UBERON:0002037	63.22	gold quality
cerebellar hemisphere	UBERON:0002245	63.19	gold quality
cortex of kidney	UBERON:0001225	63.05	gold quality
stromal cell of endometrium	CL:0002255	63.01	gold quality
prefrontal cortex	UBERON:0000451	61.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.