FAT2
gene geneOn this page
Also known as MEGF1CDHF8HFAT2CDHR9
Summary
FAT2 (FAT atypical cadherin 2, HGNC:3596) is a protein-coding gene on chromosome 5q33.1, encoding Protocadherin Fat 2 (Q9NYQ8). Involved in the regulation of cell migration.
This gene is the second identified human homolog of the Drosophila fat gene, which encodes a tumor suppressor essential for controlling cell proliferation during Drosophila development. The gene product is a member of the cadherin superfamily, a group of integral membrane proteins characterized by the presence of cadherin-type repeats. In addition to containing 34 tandem cadherin-type repeats, the gene product has two epidermal growth factor (EGF)-like repeats and one laminin G domain. This protein most likely functions as a cell adhesion molecule, controlling cell proliferation and playing an important role in cerebellum development.
Source: NCBI Gene 2196 — RefSeq curated summary.
At a glance
- Gene–disease (curated): spinocerebellar ataxia 45 (Strong, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 1,476 total — 1 likely-pathogenic
- Phenotypes (HPO): 8
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- MANE Select transcript:
NM_001447
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3596 |
| Approved symbol | FAT2 |
| Name | FAT atypical cadherin 2 |
| Location | 5q33.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MEGF1, CDHF8, HFAT2, CDHR9 |
| Ensembl gene | ENSG00000086570 |
| Ensembl biotype | protein_coding |
| OMIM | 604269 |
| Entrez | 2196 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000261800, ENST00000520200
RefSeq mRNA: 1 — MANE Select: NM_001447
NM_001447
CCDS: CCDS4317
Canonical transcript exons
ENST00000261800 — 24 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000767790 | 151507154 | 151507611 |
| ENSE00000767791 | 151510021 | 151510174 |
| ENSE00000767792 | 151512165 | 151512606 |
| ENSE00000906375 | 151534409 | 151534642 |
| ENSE00001033801 | 151540567 | 151540763 |
| ENSE00001085813 | 151529178 | 151529392 |
| ENSE00001085814 | 151521276 | 151522086 |
| ENSE00001085815 | 151525768 | 151525965 |
| ENSE00001085818 | 151527996 | 151528133 |
| ENSE00001085819 | 151527234 | 151527377 |
| ENSE00001085820 | 151531587 | 151531970 |
| ENSE00001085821 | 151517620 | 151517765 |
| ENSE00001413330 | 151537793 | 151537946 |
| ENSE00001820549 | 151504092 | 151506097 |
| ENSE00002208176 | 151553177 | 151553387 |
| ENSE00002220603 | 151551467 | 151551606 |
| ENSE00002226428 | 151554362 | 151554673 |
| ENSE00002239592 | 151563325 | 151563639 |
| ENSE00002262397 | 151549295 | 151549505 |
| ENSE00002265077 | 151556344 | 151556402 |
| ENSE00002273025 | 151550590 | 151550871 |
| ENSE00002287987 | 151565673 | 151568951 |
| ENSE00002305057 | 151542285 | 151546337 |
| ENSE00003917608 | 151591165 | 151591331 |
Expression profiles
Bgee: expression breadth ubiquitous, 182 present calls, max score 98.34.
FANTOM5 (CAGE): breadth broad, TPM avg 4.5026 / max 815.3420, expressed in 213 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 64373 | 4.2841 | 210 |
| 64372 | 0.1260 | 59 |
| 64374 | 0.0774 | 12 |
| 64366 | 0.0152 | 5 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| paraflocculus | UBERON:0005351 | 98.34 | gold quality |
| cerebellar vermis | UBERON:0004720 | 97.25 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.13 | gold quality |
| cerebellum | UBERON:0002037 | 97.07 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.07 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 95.74 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 91.50 | gold quality |
| esophagus mucosa | UBERON:0002469 | 91.39 | gold quality |
| gingival epithelium | UBERON:0001949 | 90.93 | gold quality |
| gingiva | UBERON:0001828 | 90.59 | gold quality |
| skin of abdomen | UBERON:0001416 | 89.06 | gold quality |
| skin of leg | UBERON:0001511 | 88.10 | gold quality |
| upper arm skin | UBERON:0004263 | 87.94 | gold quality |
| zone of skin | UBERON:0000014 | 87.48 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 86.75 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 86.68 | gold quality |
| oral cavity | UBERON:0000167 | 85.39 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 85.11 | silver quality |
| squamous epithelium | UBERON:0006914 | 84.60 | gold quality |
| upper leg skin | UBERON:0004262 | 84.22 | gold quality |
| mammalian vulva | UBERON:0000997 | 83.79 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 83.79 | gold quality |
| skin of hip | UBERON:0001554 | 82.59 | gold quality |
| penis | UBERON:0000989 | 81.21 | gold quality |
| secondary oocyte | CL:0000655 | 80.48 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 79.92 | silver quality |
| vagina | UBERON:0000996 | 79.27 | gold quality |
| cervix epithelium | UBERON:0004801 | 78.84 | silver quality |
| pharyngeal mucosa | UBERON:0000355 | 76.48 | gold quality |
| tonsil | UBERON:0002372 | 76.19 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.09 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
83 targeting FAT2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-221-3P | 99.86 | 71.56 | 1329 |
| HSA-MIR-222-3P | 99.86 | 71.35 | 1337 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-10393-5P | 99.65 | 68.01 | 1368 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-302B-5P | 99.50 | 69.49 | 1857 |
Literature-anchored findings (GeneRIF, showing 4)
- Human Fat2 is localized at immature adherens junctions in epidermal keratinocytes. (PMID:17900869)
- DeltaNp63alpha (TP63) is co-expressed with FAT2 and Slug in patient tumors and the elevated expression of DeltaNp63alpha, FAT2 and Slug correlated with poor patient outcome. (PMID:27081041)
- Requirement of FAT and DCHS protocadherins during hypothalamic-pituitary development. (PMID:33108146)
- Identification of the RP11-21C4.1/SVEP1 gene pair associated with FAT2 mutations as a potential biomarker in gastric cancer. (PMID:34308747)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fat2 | ENSDARG00000018923 |
| mus_musculus | Fat2 | ENSMUSG00000055333 |
| rattus_norvegicus | Fat2 | ENSRNOG00000012575 |
| drosophila_melanogaster | stan | FBGN0024836 |
| caenorhabditis_elegans | WBGENE00001475 | |
| caenorhabditis_elegans | hmr-1 | WBGENE00001980 |
| caenorhabditis_elegans | Y52B11A.11 | WBGENE00014914 |
Paralogs (6): CELSR3 (ENSG00000008300), CELSR1 (ENSG00000075275), FAT1 (ENSG00000083857), CELSR2 (ENSG00000143126), FAT3 (ENSG00000165323), FAT4 (ENSG00000196159)
Protein
Protein identifiers
Protocadherin Fat 2 — Q9NYQ8 (reviewed: Q9NYQ8)
Alternative names: Cadherin family member 8, Multiple epidermal growth factor-like domains protein 1
All UniProt accessions (2): Q9NYQ8, H0YBK2
UniProt curated annotations — full annotation on UniProt →
Function. Involved in the regulation of cell migration. May be involved in mediating the organization of the parallel fibers of granule cells during cerebellar development.
Subunit / interactions. Homodimer.
Subcellular location. Cell membrane. Cell junction. Golgi apparatus. trans-Golgi network.
Tissue specificity. Expressed in epidermal keratinocytes, infant brain, cerebellum, and also in a variety of tumors, such as pancreatic cancer, diffuse type gastric cancer, ovarian cancer, esophageal cancer, skin squamous cell carcinoma, head and neck cancer. Not expressed in melanoma cell line A375 cells, normal epidermal melanocytes or normal dermal fibroblasts. Expressed in epidermal keratinocytes and squamous cell carcinoma (at protein level).
Disease relevance. Spinocerebellar ataxia 45 (SCA45) [MIM:617769] A form of spinocerebellar ataxia, a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA45 is a slowly progressive, autosomal dominant form with onset in adulthood. The disease may be caused by variants affecting the gene represented in this entry.
RefSeq proteins (1): NP_001438* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR002126 | Cadherin-like_dom | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR015919 | Cadherin-like_sf | Homologous_superfamily |
| IPR020894 | Cadherin_CS | Conserved_site |
| IPR039808 | Cadherin | Family |
Pfam: PF00008, PF00028, PF02210
UniProt features (113 total): glycosylation site 38, domain 35, sequence variant 25, disulfide bond 7, sequence conflict 3, topological domain 2, signal peptide 1, chain 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q9NYQ8 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (7): 3912–3944, 3951–3962, 3956–3972, 3974–3983, 3990–4001, 3995–4010, 4012–4021
Glycosylation sites (38): 39, 210, 280, 330, 459, 568, 627, 655, 789, 996, 1175, 1383, 1417, 1904, 1998, 2007, 2165, 2183, 2325, 2368 …
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 123 (showing top):
WU_APOPTOSIS_BY_CDKN1A_VIA_TP53, JAEGER_METASTASIS_DN, GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION, AGGCACT_MIR5153P, MODULE_66, GOBP_CELL_CELL_ADHESION, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, GOBP_TISSUE_MIGRATION, TGTGTGA_MIR377, MODULE_88, NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN, GOCC_CELL_CELL_JUNCTION, GOBP_CELL_SUBSTRATE_ADHESION, MODULE_11, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN
GO Biological Process (6): homophilic cell-cell adhesion (GO:0007156), epithelial cell migration (GO:0010631), cell-substrate adhesion (GO:0031589), cell-cell adhesion mediated by cadherin (GO:0044331), cell adhesion (GO:0007155), cell-cell adhesion (GO:0098609)
GO Molecular Function (1): calcium ion binding (GO:0005509)
GO Cellular Component (7): Golgi apparatus (GO:0005794), plasma membrane (GO:0005886), adherens junction (GO:0005912), extracellular exosome (GO:0070062), cell-cell junction (GO:0005911), membrane (GO:0016020), anchoring junction (GO:0070161)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell-cell adhesion | 2 |
| cell adhesion | 2 |
| ameboidal-type cell migration | 1 |
| epithelium migration | 1 |
| cellular process | 1 |
| metal ion binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-cell junction | 1 |
| extracellular vesicle | 1 |
| anchoring junction | 1 |
| cellular anatomical structure | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1212 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FAT2 | FJX1 | Q86VR8 | 646 |
| FAT2 | LAMC1 | P11047 | 603 |
| FAT2 | FAT4 | Q6V0I7 | 582 |
| FAT2 | EGF | P01133 | 530 |
| FAT2 | SCRIB | Q14160 | 525 |
| FAT2 | ZNF750 | Q32MQ0 | 524 |
| FAT2 | NPHS1 | O60500 | 493 |
| FAT2 | CCDC175 | P0C221 | 483 |
| FAT2 | KIRREL3 | Q8IZU9 | 472 |
| FAT2 | KIRREL1 | Q96J84 | 461 |
| FAT2 | PCDH11X | Q9BZA7 | 456 |
| FAT2 | GRM4 | Q14833 | 453 |
| FAT2 | DDN | O94850 | 444 |
| FAT2 | GABRA6 | Q16445 | 438 |
| FAT2 | FAT1 | Q14517 | 424 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PDLIM7 | CRYBG2 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (8): FAT2 (Affinity Capture-MS), FAT2 (Affinity Capture-MS), FAT2 (Reconstituted Complex), FAT2 (Proximity Label-MS), FAT2 (Cross-Linking-MS (XL-MS)), FAT2 (Affinity Capture-MS), FAT2 (Cross-Linking-MS (XL-MS)), FAT2 (Co-fractionation)
ESM2 similar proteins: E9Q7P9, O88277, O93319, P55280, P55281, P55285, P55289, P70408, P79995, P97326, Q08DJ5, Q12864, Q13634, Q14517, Q24298, Q2PZL6, Q3SWX5, Q5DWV1, Q5DWV2, Q5F226, Q63315, Q6B3P0, Q6KEQ9, Q6V0I7, Q6WXV7, Q6WYY1, Q6X862, Q6ZTQ4, Q71M42, Q8BIZ0, Q8BL00, Q8BM92, Q8BNA6, Q8N6Y1, Q8QGH3, Q8R508, Q8TDW7, Q90762, Q90763, Q91838
Diamond homologs: A2ASQ1, A2ASS6, A3KN33, A8DYP0, B4F785, O00468, O35474, O43854, O55005, O88516, O89026, O94779, P00740, P25304, P29294, P35590, Q05793, Q06561, Q16787, Q4LDE5, Q4VBE4, Q5R7K9, Q5RBN1, Q63HQ2, Q7TPD3, Q8N9C0, Q8TER0, Q8WZ42, Q95ND7, Q96MS0, Q9HCK4, Q9NYJ7, Q9NYQ8, Q9Y2H6, Q9Y6N7, Q9Z2I4, A2CG49, G5EBF1, O01761, O60229
SIGNOR signaling
0 interactions.
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — VULVA.
Clinical variants and AI predictions
ClinVar
1476 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 914 |
| Likely benign | 320 |
| Benign | 123 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3064881 | NM_001447.3(FAT2):c.3632A>C (p.Glu1211Ala) | Likely pathogenic |
SpliceAI
3493 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:151512189:T:TA | donor_gain | 1.0000 |
| 5:151512190:C:A | donor_gain | 1.0000 |
| 5:151523000:T:TA | donor_gain | 1.0000 |
| 5:151525800:T:TA | donor_gain | 1.0000 |
| 5:151525808:AGGC:A | donor_gain | 1.0000 |
| 5:151525973:C:CT | acceptor_gain | 1.0000 |
| 5:151525973:C:T | acceptor_gain | 1.0000 |
| 5:151525974:G:T | acceptor_gain | 1.0000 |
| 5:151527228:GCTTA:G | donor_loss | 1.0000 |
| 5:151527229:CTTA:C | donor_loss | 1.0000 |
| 5:151527230:TTAC:T | donor_loss | 1.0000 |
| 5:151527231:TAC:T | donor_loss | 1.0000 |
| 5:151527232:A:AC | donor_gain | 1.0000 |
| 5:151527233:C:CC | donor_gain | 1.0000 |
| 5:151527233:C:CT | donor_loss | 1.0000 |
| 5:151527377:CCTAT:C | acceptor_gain | 1.0000 |
| 5:151527378:C:CA | acceptor_loss | 1.0000 |
| 5:151527378:C:CC | acceptor_gain | 1.0000 |
| 5:151527379:T:G | acceptor_loss | 1.0000 |
| 5:151527991:CTCA:C | donor_loss | 1.0000 |
| 5:151527992:TCACC:T | donor_loss | 1.0000 |
| 5:151527993:CAC:C | donor_loss | 1.0000 |
| 5:151527994:A:AC | donor_gain | 1.0000 |
| 5:151527995:C:A | donor_loss | 1.0000 |
| 5:151527995:C:CC | donor_gain | 1.0000 |
| 5:151528134:C:A | acceptor_loss | 1.0000 |
| 5:151528135:T:A | acceptor_loss | 1.0000 |
| 5:151529174:TTACC:T | donor_loss | 1.0000 |
| 5:151529176:A:AC | donor_gain | 1.0000 |
| 5:151529177:C:CC | donor_gain | 1.0000 |
AlphaMissense
28601 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:151521583:G:C | S3670R | 0.996 |
| 5:151521583:G:T | S3670R | 0.996 |
| 5:151521585:T:G | S3670R | 0.996 |
| 5:151543541:A:G | F2529S | 0.996 |
| 5:151551504:A:T | V1420D | 0.996 |
| 5:151528054:A:G | F3369S | 0.995 |
| 5:151544393:G:T | A2245D | 0.995 |
| 5:151553338:A:G | L1332P | 0.995 |
| 5:151543493:C:G | R2545P | 0.994 |
| 5:151544361:C:G | A2256P | 0.994 |
| 5:151544394:C:G | A2245P | 0.994 |
| 5:151544399:A:T | V2243D | 0.994 |
| 5:151531607:A:G | F3264S | 0.993 |
| 5:151542452:A:T | V2892D | 0.993 |
| 5:151542680:A:T | V2816D | 0.993 |
| 5:151543684:G:C | F2481L | 0.993 |
| 5:151543684:G:T | F2481L | 0.993 |
| 5:151543685:A:G | F2481S | 0.993 |
| 5:151543686:A:G | F2481L | 0.993 |
| 5:151554408:A:T | V1300D | 0.993 |
| 5:151568687:A:G | F82S | 0.993 |
| 5:151521641:A:G | L3651P | 0.992 |
| 5:151542497:G:T | A2877D | 0.992 |
| 5:151542654:C:G | D2825H | 0.992 |
| 5:151543290:C:G | D2613H | 0.992 |
| 5:151543301:G:T | A2609D | 0.992 |
| 5:151544615:A:G | F2171S | 0.992 |
| 5:151553327:A:G | W1336R | 0.992 |
| 5:151553327:A:T | W1336R | 0.992 |
| 5:151505937:G:C | F4226L | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000074856 (5:151580737 G>A), RS1000141941 (5:151553873 G>C), RS1000190201 (5:151557066 C>G,T), RS1000241304 (5:151595982 C>T), RS1000272772 (5:151522487 T>C), RS1000284306 (5:151585649 A>G), RS1000331428 (5:151509020 CTCTT>C), RS1000424725 (5:151550400 G>A), RS1000425715 (5:151591129 C>A,G,T), RS1000429438 (5:151595776 G>C,T), RS1000431163 (5:151557553 A>G), RS1000510205 (5:151533466 G>C), RS1000518872 (5:151527672 C>G,T), RS1000552493 (5:151538163 G>A), RS1000597936 (5:151579836 T>C)
Disease associations
OMIM: gene MIM:604269 | disease phenotypes: MIM:108600, MIM:617769
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spinocerebellar ataxia 45 | Strong | Autosomal dominant |
Mondo (3): spastic ataxia (MONDO:0017845), spinocerebellar ataxia 45 (MONDO:0033480), cerebellar ataxia (MONDO:0000437)
Orphanet (3): Spastic ataxia (Orphanet:316226), Spinocerebellar ataxia type 45 (Orphanet:589527), Rare ataxia (Orphanet:102002)
HPO phenotypes
8 total (8 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001260 | Dysarthria |
| HP:0001272 | Cerebellar atrophy |
| HP:0002066 | Gait ataxia |
| HP:0002070 | Limb ataxia |
| HP:0003596 | Middle age onset |
| HP:0003677 | Slowly progressive |
| HP:0010545 | Downbeat nystagmus |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST011176_4 | Stroke | 6.000000e-07 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002524 | Cerebellar Ataxia | C10.228.140.252.190; C10.597.350.090.500; C23.888.592.350.090.200 |
| C564815 | Spastic Ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, increases expression | 3 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation | 3 |
| Aflatoxin B1 | affects methylation, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| sotorasib | affects cotreatment, increases expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| cobaltous chloride | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| cupric chloride | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, affects response to substance, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| bisphenol S | decreases methylation | 1 |
| trametinib | affects cotreatment, increases expression | 1 |
| NVP-BKM120 | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Copper | affects cotreatment, decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance, affects cotreatment | 1 |
| Methapyrilene | decreases methylation | 1 |
| Nicotine | increases expression | 1 |
| Progesterone | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Sodium Selenite | decreases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
Clinical trials (associated diseases)
147 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT04107740 | PHASE4 | COMPLETED | C-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration |
| NCT01970098 | PHASE3 | COMPLETED | A Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970111 | PHASE3 | COMPLETED | An Extension Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970124 | PHASE3 | COMPLETED | A Long-Term Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970137 | PHASE3 | COMPLETED | A 24-week Open-label Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT02889302 | PHASE3 | COMPLETED | An Additional Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT03408080 | PHASE3 | ACTIVE_NOT_RECRUITING | Open Pilot Trial of BHV-4157 |
| NCT03701399 | PHASE3 | ACTIVE_NOT_RECRUITING | Troriluzole in Adult Participants With Spinocerebellar Ataxia |
| NCT03901638 | PHASE3 | TERMINATED | Tllsh2910 for Ataxia and Gut Microbiota Alteration in Patients of Multiple System Atrophy |
| NCT07040137 | PHASE3 | RECRUITING | Confirmatory Study 3 of KPS-0373 in Patients With Spinocerebellar Degeneration |
| NCT00034242 | PHASE2 | COMPLETED | High-Dose Intravenous Immunoglobulin to Treat Cerebellar Degeneration |
| NCT00202397 | PHASE2 | COMPLETED | Effect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia |
| NCT00863538 | PHASE2 | COMPLETED | Phase II Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01004016 | PHASE2 | COMPLETED | A Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01350440 | PHASE2 | COMPLETED | Safety and Efficacy of Intravenous Immune Globulin in Treating Spinocerebellar Ataxia |
| NCT02540655 | PHASE2 | COMPLETED | Efficacy and Safety Study of Stemchymal® in Polyglutamine Spinocerebellar Ataxia |
| NCT03932669 | PHASE2 | COMPLETED | Effect of Nilotinib in Cerebellar Ataxia Patients |
| NCT04301284 | PHASE2 | WITHDRAWN | Study of CAD-1883 for Spinocerebellar Ataxia |
| NCT05125666 | PHASE2 | UNKNOWN | Efficacy of Dual Task Training on Children With Ataxia After Medulloblastoma Resection |
| NCT06397274 | PHASE2 | NOT_YET_RECRUITING | Stemchymal® for Polyglutamine Spinocerebellar Ataxia |
| NCT00683943 | PHASE1 | COMPLETED | Lithium Treatment for Patients With Spinocerebellar Ataxia Type I |
| NCT02287064 | PHASE1 | UNKNOWN | An Open-label Trial of Intravenous Immune Globulin (IVIG)in Treating Spinocerebellar Ataxias |
| NCT05157802 | PHASE1 | ACTIVE_NOT_RECRUITING | Promoting Physical Activity Engagement for People With Early-stage Cerebellar Ataxia |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT04297891 | Not specified | UNKNOWN | Phenotypes, Biomarkers and Pathophysiology in Spastic Ataxias |
| NCT01104649 | PHASE2/PHASE3 | COMPLETED | Efficacy of Riluzole in Hereditary Cerebellar Ataxia |
| NCT02960893 | PHASE2/PHASE3 | COMPLETED | Trial in Adult Participants With Spinocerebellar Ataxia (SCA) |
| NCT00244361 | PHASE1/PHASE2 | COMPLETED | Effectiveness of Rituximab in Pediatric OMS Patients. |
| NCT01649687 | PHASE1/PHASE2 | COMPLETED | Treatment of Cerebellar Ataxia With Mesenchymal Stem Cells |
| NCT01958177 | PHASE1/PHASE2 | UNKNOWN | Clinical Study to Evaluate the Safety and Efficacy BMMNC in Cerebellar Ataxia |
| NCT02829268 | PHASE1/PHASE2 | COMPLETED | A Clinical Trial of Dantrolene Sodium in Pediatric and Adult Patients With Wolfram Syndrome |
| NCT00001324 | Not specified | COMPLETED | PET Scan to Study Brain Control of Human Movement |
| NCT00006492 | Not specified | COMPLETED | Gluten-Free Diet in Patients With Gluten Sensitivity and Cerebellar Ataxia |
| NCT00136630 | Not specified | COMPLETED | Natural History, Genetic Bases and Phenotype-genotype Correlations in Autosomal Dominant Spinocerebellar Degenerations |
| NCT00140829 | Not specified | COMPLETED | SPATAX: Clinical and Genetic Analysis of Cerebellar Ataxias and Spastic Paraplegias |
| NCT00272272 | Not specified | COMPLETED | Fall Prevention in a Geriatric Nursing Home Setting Using the Music of Nolwenn Leroy |
| NCT00654251 | Not specified | COMPLETED | Measuring Neurological Impairment and Functional Visual Assessment In Spinocerebellar Ataxias |
| NCT00692861 | Not specified | COMPLETED | Autoimmunity in Neurologic Complications of Celiac Disease |
| NCT01037777 | Not specified | COMPLETED | RISCA : Prospective Study of Individuals at Risk for SCA1, SCA2, SCA3, SCA6, SCA7 |
Related Atlas pages
- Associated diseases: spinocerebellar ataxia 45
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cerebellar ataxia, spastic ataxia, spinocerebellar ataxia 45