FBN2
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Also known as DA9
Summary
FBN2 (fibrillin 2, HGNC:3604) is a protein-coding gene on chromosome 5q23.3, encoding Fibrillin-2 (P35556). Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles.
The protein encoded by this gene is a component of connective tissue microfibrils and may be involved in elastic fiber assembly. Mutations in this gene cause congenital contractural arachnodactyly.
Source: NCBI Gene 2201 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital contractural arachnodactyly (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 38
- Clinical variants (ClinVar): 4,111 total — 44 pathogenic, 84 likely-pathogenic
- Phenotypes (HPO): 67
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001999
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3604 |
| Approved symbol | FBN2 |
| Name | fibrillin 2 |
| Location | 5q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DA9 |
| Ensembl gene | ENSG00000138829 |
| Ensembl biotype | protein_coding |
| OMIM | 612570 |
| Entrez | 2201 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 8 retained_intron, 6 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000262464, ENST00000502468, ENST00000507835, ENST00000508053, ENST00000508989, ENST00000511489, ENST00000514742, ENST00000703782, ENST00000703783, ENST00000703784, ENST00000703785, ENST00000703786, ENST00000703787, ENST00000706682, ENST00000939404, ENST00000939405
RefSeq mRNA: 1 — MANE Select: NM_001999
NM_001999
CCDS: CCDS34222
Canonical transcript exons
ENST00000262464 — 65 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001130334 | 128257909 | 128259829 |
| ENSE00003459865 | 128376731 | 128376853 |
| ENSE00003477332 | 128530595 | 128530693 |
| ENSE00003481923 | 128519273 | 128519368 |
| ENSE00003485096 | 128464724 | 128464921 |
| ENSE00003499663 | 128369182 | 128369334 |
| ENSE00003550772 | 128527872 | 128527967 |
| ENSE00003589246 | 128374628 | 128374750 |
| ENSE00003590581 | 128366377 | 128366430 |
| ENSE00003677122 | 128536402 | 128536484 |
| ENSE00003747050 | 128537350 | 128538245 |
| ENSE00003888749 | 128318149 | 128318271 |
| ENSE00003888781 | 128277880 | 128278005 |
| ENSE00003888945 | 128301382 | 128301510 |
| ENSE00003889041 | 128337997 | 128338122 |
| ENSE00003889375 | 128335455 | 128335577 |
| ENSE00003889448 | 128335988 | 128336113 |
| ENSE00003889618 | 128300817 | 128300936 |
| ENSE00003889669 | 128286718 | 128286849 |
| ENSE00003889813 | 128278635 | 128278841 |
| ENSE00003890126 | 128344385 | 128344510 |
| ENSE00003890200 | 128263425 | 128263656 |
| ENSE00003890404 | 128290732 | 128290884 |
| ENSE00003890483 | 128328696 | 128328821 |
| ENSE00003890773 | 128304957 | 128305082 |
| ENSE00003890801 | 128349955 | 128350005 |
| ENSE00003890996 | 128291529 | 128291654 |
| ENSE00003891171 | 128378771 | 128378890 |
| ENSE00003891437 | 128273840 | 128273968 |
| ENSE00003891620 | 128305511 | 128305636 |
| ENSE00003892132 | 128302973 | 128303089 |
| ENSE00003892159 | 128311300 | 128311425 |
| ENSE00003892185 | 128276038 | 128276160 |
| ENSE00003892264 | 128338933 | 128339061 |
| ENSE00003892286 | 128392018 | 128392155 |
| ENSE00003892550 | 128357276 | 128357395 |
| ENSE00003892586 | 128446481 | 128446606 |
| ENSE00003892640 | 128408674 | 128408799 |
| ENSE00003892841 | 128309247 | 128309399 |
| ENSE00003892965 | 128345357 | 128345584 |
| ENSE00003893034 | 128330573 | 128330695 |
| ENSE00003893153 | 128288438 | 128288557 |
| ENSE00003893259 | 128349347 | 128349472 |
| ENSE00003893404 | 128334719 | 128334844 |
| ENSE00003893596 | 128289127 | 128289252 |
| ENSE00003893721 | 128332912 | 128333034 |
| ENSE00003893857 | 128361723 | 128361848 |
| ENSE00003893895 | 128312634 | 128312795 |
| ENSE00003894108 | 128364600 | 128364725 |
| ENSE00003894184 | 128289882 | 128289947 |
| ENSE00003894380 | 128350868 | 128351005 |
| ENSE00003894494 | 128271999 | 128272118 |
| ENSE00003894646 | 128377752 | 128377877 |
| ENSE00003894658 | 128274567 | 128274683 |
| ENSE00003894862 | 128393135 | 128393368 |
| ENSE00003894873 | 128309983 | 128310108 |
| ENSE00003894997 | 128307135 | 128307203 |
| ENSE00003895021 | 128305823 | 128305948 |
| ENSE00003895354 | 128335170 | 128335295 |
| ENSE00003895432 | 128318879 | 128319001 |
| ENSE00003895513 | 128280192 | 128280317 |
| ENSE00003895742 | 128311885 | 128311953 |
| ENSE00003895772 | 128261736 | 128261907 |
| ENSE00003896177 | 128287308 | 128287430 |
| ENSE00003896178 | 128395122 | 128395274 |
Expression profiles
Bgee: expression breadth ubiquitous, 194 present calls, max score 97.94.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.3636 / max 1321.8586, expressed in 1270 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 63239 | 30.6527 | 1202 |
| 63237 | 4.6322 | 932 |
| 63234 | 1.8638 | 750 |
| 63238 | 0.7097 | 339 |
| 63241 | 0.4878 | 310 |
| 63235 | 0.4776 | 123 |
| 63240 | 0.2815 | 176 |
| 63233 | 0.1901 | 81 |
| 63232 | 0.0281 | 14 |
| 63236 | 0.0204 | 3 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cartilage tissue | UBERON:0002418 | 97.94 | gold quality |
| placenta | UBERON:0001987 | 97.89 | gold quality |
| adrenal tissue | UBERON:0018303 | 96.68 | gold quality |
| decidua | UBERON:0002450 | 93.90 | gold quality |
| stromal cell of endometrium | CL:0002255 | 93.38 | gold quality |
| heart right ventricle | UBERON:0002080 | 85.81 | gold quality |
| embryo | UBERON:0000922 | 84.79 | gold quality |
| monocyte | CL:0000576 | 80.12 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.09 | gold quality |
| mononuclear cell | CL:0000842 | 79.86 | gold quality |
| buccal mucosa cell | CL:0002336 | 79.72 | gold quality |
| leukocyte | CL:0000738 | 79.45 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 77.28 | silver quality |
| ganglionic eminence | UBERON:0004023 | 76.99 | gold quality |
| apex of heart | UBERON:0002098 | 76.96 | gold quality |
| ventricular zone | UBERON:0003053 | 76.60 | gold quality |
| adrenal gland | UBERON:0002369 | 75.98 | gold quality |
| cardiac ventricle | UBERON:0002082 | 75.76 | gold quality |
| heart left ventricle | UBERON:0002084 | 75.59 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 75.35 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 75.17 | gold quality |
| right adrenal gland | UBERON:0001233 | 74.70 | gold quality |
| periodontal ligament | UBERON:0008266 | 74.54 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 74.32 | gold quality |
| adrenal cortex | UBERON:0001235 | 74.32 | gold quality |
| left adrenal gland | UBERON:0001234 | 74.30 | gold quality |
| bone marrow | UBERON:0002371 | 74.16 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 73.90 | gold quality |
| retina | UBERON:0000966 | 73.89 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 72.80 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 1000.42 |
| E-MTAB-10018 | yes | 96.92 |
| E-HCAD-10 | yes | 28.28 |
| E-MTAB-9388 | yes | 11.11 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, E2F2, E2F3, E2F4, GLI1
miRNA regulators (miRDB)
188 targeting FBN2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-371A-3P | 99.99 | 66.77 | 91 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Ten novel mutations have been identified in the critical region of FBN2, indicating a mutation detection rate of 75% in this limited region; none of the mutations altered amino acids in the calcium binding consensus sequence of EGF-like domains. (PMID:11754102)
- fibrillins can directly interact in an N- to C-terminal fashion to form homotypic fibrillin-1 or heterotypic fibrillin-1/fibrillin-2 microfibrils (PMID:12399449)
- there are distinct functions for fibrillin-2 in peripheral nerves (PMID:12429739)
- In kidney, liver, rib anlagen, notochord fibrillin-1 and fibrillin-2 are distributed differentially. Different roles for fibrillin-1 and -2 in the development of these structures. (PMID:12524050)
- Relaxin regulates its mRNA and protein expression by human dermal fibroblasts and murine fetal skin (PMID:12590922)
- No associations of intracranial aneurysm and FBN2 were found. (PMID:12750963)
- Results identify MAGP-2 binding regions in the N-terminal portion of fibrillin-1 and -2 molecules. (PMID:15131124)
- A comprehensive genetic analysis of FBN2 was performed in patients with Marfan syndrome or Marfan-related phenotypes. (PMID:16835936)
- ternary complex formation between fibrillin-1, fibulins, and tropoelastin demonstrated that fibulin-2 and -5 but much less fibulin-4, are able to act as molecular adaptors between fibrillin-1 and tropoelastin (PMID:17255108)
- Discrete domains of fibrillins-1 and -2 interact with lung fibroblast integrins and direct their migration in the presence of platelet-derived growth factor (PDGF)-A. (PMID:18006876)
- In 14 probands, 13 new and one previously described FBN2 mutation including a mutation in exon 17, expanding the region in which FBN2 mutations occur in CCA. (PMID:19006240)
- Methylation of CLDN6, FBN2, RBP1, RBP4, TFPI2, and TMEFF2 in esophageal squamous cell carcinoma. (PMID:19288010)
- EGFR, fibrillin-2, P-cadherin and AP2beta as biomarkers for rhabdomyosarcoma diagnostics. (PMID:19469909)
- A novel mutation (C1425Y) in the FBN2 gene in a father and son with congenital contractural arachnodactyly is reported. (PMID:19473076)
- Examine association between FBN2 SNPs and intracranial aneurysms in Japanese cohort. (PMID:19506372)
- Data show that in wound healing and sclerotic skin diseases, a marked increase of fibrillin-2 expression was found by immunohistology. (PMID:20195245)
- Data demonstrated that N-terminal fibrillin-2 epitopes are masked in postnatal microfibrils. (PMID:20404337)
- These results suggest that both fibrillin-1 and fibrillin-2 are essential for the formation of thick oxytalan fibers in the ciliary zonule. (PMID:21851253)
- There was no association of overall methylation of FBN2 in the serum DNA with age, maximal tumor size, extent of tumor, tumor site, histology, presence of lymph node metastasis, distant metastasis, or Dukes’ stage. (PMID:23060561)
- Fibrillin mutations causing Weill-Marchesani syndrome and acromicric and geleophysic dysplasias disrupt heparan sulfate interactions (PMID:23133647)
- we demonstrate an important role for FBN1 and FBN2 in AIS pathogenesis. We show that rare variants are enriched in severely affected AIS patients and are significantly associated with curve severity. (PMID:24833718)
- Rare and common variants in extracellular matrix gene Fibrillin 2 (FBN2) are associated with macular degeneration. (PMID:24899048)
- DNA sequence variation within the FBN2 gene is associated with both Achilles tendon (AT) and anterior cruciate ligament (ACL) rupture. (PMID:25429546)
- The presence of the splice site mutation in FBN2 gene has been confirmed in a Japanese family with congenital contractural arachnodactyly complicated with aortic dilatation and dissection. (PMID:25975422)
- A novel missense mutation, c.3769T>C (p.C1257R) in FBN2 was identified responsible for the genetic cause in a family with congenital contractural arachnodactyly. (PMID:27196565)
- BAV patients have an increased FBN (especially FBN2) gene expression level in the ascending aorta, irrespective of dilatation, whereas MMP expression does not change significantly. (PMID:27634926)
- Study described a novel mutation seen in a family with three generations of congenital contractural arachnodactyly (CCA). Whole exome sequencing in two affected individuals identified a novel missense mutation in the FBN2 gene in all affected family members. (PMID:28379158)
- Decellularized lung scaffolds treated with FBN-2 and TN-C prior to re-epithelialization supported greater epithelial proliferation and tissue remodeling. (PMID:28662401)
- Case Report: femoral aneurysm in patient with FBN2 mutation. (PMID:29742989)
- Sequencing analysis showed a novel missense mutation in exon 30 of FBN2 gene [c.3973G>A, p.Asp1325Asn; Chr5 (g.127670862C>T) according to NM_001999.3] (PMID:29864108)
- No common variant of FBN2 was, however, found to be significantly associated with AIS. (PMID:30044367)
- The c.3528C>A (p.Asn1176Lys) variant of the FBN2 gene probably underlies the pathogenesis of CCA in our case of congenital contractural arachnodactyly (PMID:32335871)
- A novel pathogenic mutation in FBN2 associated with congenital contractural arachnodactyly for preimplantation genetic diagnosis. (PMID:32747207)
- Delineation of a new fibrillin-2-opathy with evidence for a role of FBN2 in the pathogenesis of carpal tunnel syndrome. (PMID:32900841)
- Fibrillin 2 gene knockdown inhibits invasion and migration of lung cancer cells. (PMID:33287941)
- Mutation analysis and prenatal diagnosis of a family with congenital contractural arachnodactyly. (PMID:33638605)
- Expanding the phenotypic spectrum of Mendelian connective tissue disorders to include prominent kidney phenotypes. (PMID:34355836)
- POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1. (PMID:34411563)
- FBN2 Silencing Recapitulates Hypoxic Conditions and Induces Elastic Fiber Impairment in Human Dermal Fibroblasts. (PMID:35163744)
- The fibrillinopathies: New insights with focus on the paradigm of opposing phenotypes for both FBN1 and FBN2. (PMID:35419902)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fbn2a | ENSDARG00000051896 |
| mus_musculus | Fbn2 | ENSMUSG00000024598 |
| rattus_norvegicus | Fbn2 | ENSRNOG00000043219 |
Paralogs (2): FBN3 (ENSG00000142449), FBN1 (ENSG00000166147)
Protein
Protein identifiers
Fibrillin-2 — P35556 (reviewed: P35556)
All UniProt accessions (4): P35556, A0A9H4AZX0, D6RJI3, E9PHW4
UniProt curated annotations — full annotation on UniProt →
Function. Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-2-containing microfibrils regulate the early process of elastic fiber assembly. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively. Hormone secreted by trophoblasts that promotes trophoblast invasiveness. Has glucogenic activity: is able to increase plasma glucose levels.
Subunit / interactions. Interacts with BMP2, BMP4, BMP7, BMP10 and GDF5. Interacts with MFAP2 and MFAP5. Interacts with ADAMTSL5. Interacts with MFAP4.
Subcellular location. Secreted Secreted. Extracellular space. Extracellular matrix Secreted.
Tissue specificity. Almost exclusively expressed in placenta. Expressed at much lower level in other tissues. Expressed in fetal eye (18 weeks)in the retinal pigment epithelium (RPE), the choroid, Bruch’s membrane and in the sclera. Not expressed in the neural retina. Present at high level in cytotrophoblasts as compared with syncytiotrophoblasts at 8-9 weeks of pregnancy (at protein level). Levels in the serum increase during pregnancy (at protein level).
Post-translational modifications. N-glycosylated. O-glycosylated on serine residues by POGLUT2 and POGLUT3.
Disease relevance. Contractural arachnodactyly, congenital (CCA) [MIM:121050] An autosomal dominant connective tissue disorder characterized by contractures, arachnodactyly, scoliosis, and crumpled ears. The disease is caused by variants affecting the gene represented in this entry. Macular degeneration, early-onset (EOMD) [MIM:616118] An ocular disorder characterized by macular changes resulting in progressive loss of visual acuity. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the fibrillin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P35556-1 | 1 | yes |
| P35556-2 | 2 |
RefSeq proteins (1): NP_001990* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR013032 | EGF-like_CS | Conserved_site |
| IPR017878 | TB_dom | Domain |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR024731 | NELL2-like_EGF | Domain |
| IPR026823 | cEGF | Domain |
| IPR036773 | TB_dom_sf | Homologous_superfamily |
| IPR040872 | Fibrillin_U_N | Domain |
| IPR049388 | FBN_EGF_N | Domain |
| IPR049883 | NOTCH1_EGF-like | Domain |
| IPR052080 | vWF_C/EGF_Fibrillin | Family |
Pfam: PF00683, PF07645, PF12661, PF12662, PF12947, PF14670, PF18193, PF21364
UniProt features (300 total): disulfide bond 141, domain 56, sequence variant 45, glycosylation site 39, sequence conflict 8, splice variant 3, region of interest 3, chain 2, signal peptide 1, propeptide 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for P35556 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (141): 115–124, 119–130, 132–141, 149–159, 153–164, 166–175, 180–190, 184–196, 198–207, 280–292, 287–301, 303–316, 322–334, 329–343, 345–358, 498–510, 505–519, 521–533, 539–549, 544–558 …
Glycosylation sites (39): 2594, 2675, 2808, 298, 340, 492, 516, 555, 597, 638, 679, 832, 872, 977, 1095, 1112, 1180, 1222, 1263, 1347 …
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-1566948 | Elastic fibre formation |
| R-HSA-2129379 | Molecules associated with elastic fibres |
MSigDB gene sets: 469 (showing top):
GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, LEE_NEURAL_CREST_STEM_CELL_DN, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_BONE_TRABECULA_MORPHOGENESIS, BENPORATH_ES_WITH_H3K27ME3, CHIBA_RESPONSE_TO_TSA_UP, TSENG_IRS1_TARGETS_UP, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, TTTGTAG_MIR520D, MODULE_45, GOBP_OSTEOBLAST_DIFFERENTIATION, ATGCAGT_MIR217, GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, MODULE_205
GO Biological Process (11): glucose metabolic process (GO:0006006), embryonic limb morphogenesis (GO:0030326), positive regulation of bone mineralization (GO:0030501), obsolete sequestering of TGFbeta in extracellular matrix (GO:0035583), glucose homeostasis (GO:0042593), camera-type eye development (GO:0043010), positive regulation of osteoblast differentiation (GO:0045669), embryonic eye morphogenesis (GO:0048048), bone trabecula formation (GO:0060346), signal transduction (GO:0007165), limb morphogenesis (GO:0035108)
GO Molecular Function (5): hormone activity (GO:0005179), extracellular matrix structural constituent (GO:0005201), calcium ion binding (GO:0005509), extracellular matrix constituent conferring elasticity (GO:0030023), protein binding (GO:0005515)
GO Cellular Component (3): microfibril (GO:0001527), extracellular region (GO:0005576), extracellular matrix (GO:0031012)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 2 |
| Elastic fibre formation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| hexose metabolic process | 1 |
| limb morphogenesis | 1 |
| embryonic appendage morphogenesis | 1 |
| bone mineralization | 1 |
| regulation of bone mineralization | 1 |
| positive regulation of ossification | 1 |
| positive regulation of biomineral tissue development | 1 |
| carbohydrate homeostasis | 1 |
| eye development | 1 |
| osteoblast differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of osteoblast differentiation | 1 |
| embryonic organ morphogenesis | 1 |
| eye morphogenesis | 1 |
| skeletal system morphogenesis | 1 |
| trabecula formation | 1 |
| bone trabecula morphogenesis | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| appendage morphogenesis | 1 |
| limb development | 1 |
| receptor ligand activity | 1 |
| structural molecule activity | 1 |
| extracellular matrix | 1 |
| metal ion binding | 1 |
| extracellular matrix structural constituent | 1 |
| structural molecule activity conferring elasticity | 1 |
| binding | 1 |
| elastic fiber | 1 |
| supramolecular fiber | 1 |
| cellular anatomical structure | 1 |
| external encapsulating structure | 1 |
Protein interactions and networks
STRING
2418 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FBN2 | ELN | P15502 | 950 |
| FBN2 | MFAP2 | P55001 | 948 |
| FBN2 | ADAMTS17 | Q8TE56 | 902 |
| FBN2 | MFAP5 | Q13361 | 879 |
| FBN2 | FN1 | P02751 | 837 |
| FBN2 | FBN1 | P35555 | 768 |
| FBN2 | ADAMTS10 | Q9H324 | 761 |
| FBN2 | ADAMTSL5 | Q6ZMM2 | 757 |
| FBN2 | MYH3 | P11055 | 742 |
| FBN2 | TGFBR2 | P37173 | 721 |
| FBN2 | TGFBR1 | P36897 | 720 |
| FBN2 | MFAP3 | P55082 | 716 |
| FBN2 | COL3A1 | P02461 | 713 |
| FBN2 | MFAP1 | P55081 | 686 |
| FBN2 | ADAMTS6 | Q9UKP5 | 648 |
IntAct
75 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| rep | GTF2F2 | psi-mi:“MI:0914”(association) | 0.730 |
| KLK5 | DENND11 | psi-mi:“MI:0914”(association) | 0.640 |
| HRG | PLSCR1 | psi-mi:“MI:0914”(association) | 0.590 |
| tat | PPM1G | psi-mi:“MI:0914”(association) | 0.560 |
| VWCE | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| PRG3 | ZNF324 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| GREM2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| AURKA | WDR62 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF224 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| ZFP41 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF408 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| WNT7A | LDLR | psi-mi:“MI:0914”(association) | 0.530 |
| DBF4B | CDC7 | psi-mi:“MI:0914”(association) | 0.530 |
| NOTCH2 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| FBN1 | FBN2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FBN2 | FBN2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FBN2 | FN1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ADAMTSL5 | FBN2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NLRP12 | FBN2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| EGLN3 | FAM168B | psi-mi:“MI:0914”(association) | 0.350 |
| FBN2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (77): FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS), FBN2 (Affinity Capture-MS)
ESM2 similar proteins: A1A5Y0, A2VCU8, A5A6L1, A6QR11, O00622, O42182, O57472, O73775, P18406, P23142, P35555, P35556, P53813, P59511, P98089, P98133, P98155, P98166, Q00968, Q08761, Q08879, Q09163, Q13219, Q2VWQ2, Q5R3Z7, Q61220, Q61554, Q61555, Q61592, Q62918, Q62919, Q7T3Q2, Q7ZXL5, Q8AWW5, Q8CFM6, Q8CJ69, Q8MJJ9, Q8N8U9, Q8R4K8, Q8R4Y4
Diamond homologs: A0A1U9VX91, A2AJ76, O08999, O43897, O57382, O57460, O75095, P13497, P35556, P98063, P98070, P98133, Q00918, Q14766, Q61555, Q62381, Q75N90, Q7KVA1, Q8C088, Q8CG19, Q8JI28, Q9DER7, Q9TV36, A0A1D5NSM8, A1A5Y0, A2AVA0, A2RUV0, A2VCU8, A5A8Y8, A6QR11, B3EWY9, B5DFC9, G3I6Z6, O88322, P07996, P0C6B8, P10493, P12105, P14585, P21783
SIGNOR signaling
0 interactions.
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — NBL.
Clinical variants and AI predictions
ClinVar
4111 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 44 |
| Likely pathogenic | 84 |
| Uncertain significance | 1664 |
| Likely benign | 1445 |
| Benign | 244 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1333458 | NM_001999.4(FBN2):c.4296C>A (p.Tyr1432Ter) | Pathogenic |
| 1420674 | NM_001999.4(FBN2):c.4592_4594+3del | Pathogenic |
| 1454127 | NM_001999.4(FBN2):c.3472+2T>C | Pathogenic |
| 152430 | GRCh38/hg38 5q23.3(chr5:128434801-128486349)x1 | Pathogenic |
| 18402 | NM_001999.4(FBN2):c.3777T>A (p.Asn1259Lys) | Pathogenic |
| 213262 | NM_001999.4(FBN2):c.525T>A (p.Cys175Ter) | Pathogenic |
| 213320 | NM_001999.4(FBN2):c.3724+2T>C | Pathogenic |
| 2136329 | NM_001999.4(FBN2):c.3535G>T (p.Gly1179Cys) | Pathogenic |
| 2176896 | NM_001999.4(FBN2):c.4466G>A (p.Cys1489Tyr) | Pathogenic |
| 253630 | GRCh37/hg19 5q23.3(chr5:127744084-127866529)x1 | Pathogenic |
| 2583090 | NM_001999.4(FBN2):c.3230G>A (p.Cys1077Tyr) | Pathogenic |
| 2734777 | NM_001999.4(FBN2):c.4273T>C (p.Cys1425Arg) | Pathogenic |
| 2760917 | NM_001999.4(FBN2):c.3770G>A (p.Cys1257Tyr) | Pathogenic |
| 2835587 | NM_001999.4(FBN2):c.3598+6T>G | Pathogenic |
| 2851145 | NM_001999.4(FBN2):c.3298T>G (p.Cys1100Gly) | Pathogenic |
| 3246295 | NC_000005.9:g.(?127653831)(127654703_?)del | Pathogenic |
| 3337308 | NM_001999.4(FBN2):c.5801-633_6166+1908del | Pathogenic |
| 411834 | NM_001999.4(FBN2):c.4306T>C (p.Cys1436Arg) | Pathogenic |
| 4281621 | NM_001999.4(FBN2):c.5009T>G (p.Phe1670Cys) | Pathogenic |
| 449443 | NM_001999.4(FBN2):c.4222+5G>A | Pathogenic |
| 458763 | NM_001999.4(FBN2):c.3736T>C (p.Cys1246Arg) | Pathogenic |
| 4814225 | NM_001999.4(FBN2):c.4346-1G>A | Pathogenic |
| 520 | NM_001999.4(FBN2):c.1171G>A (p.Glu391Lys) | Pathogenic |
| 522 | NM_001999.4(FBN2):c.4346-2A>T | Pathogenic |
| 523 | NM_001999.4(FBN2):c.3725-15A>G | Pathogenic |
| 524 | NM_001999.4(FBN2):c.3974-26T>G | Pathogenic |
| 525 | NM_001999.4(FBN2):c.3343G>C (p.Asp1115His) | Pathogenic |
| 526 | NM_001999.4(FBN2):c.3425G>T (p.Cys1142Phe) | Pathogenic |
| 527 | NM_001999.4(FBN2):c.3759T>G (p.Cys1253Trp) | Pathogenic |
| 547356 | NM_001999.4(FBN2):c.3467G>T (p.Cys1156Phe) | Pathogenic |
SpliceAI
10355 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:128259826:CAAC:C | acceptor_gain | 1.0000 |
| 5:128259830:C:CC | acceptor_gain | 1.0000 |
| 5:128259830:CT:C | acceptor_loss | 1.0000 |
| 5:128261727:TATAC:T | donor_loss | 1.0000 |
| 5:128261728:ATAC:A | donor_loss | 1.0000 |
| 5:128261729:TACT:T | donor_loss | 1.0000 |
| 5:128261730:AC:A | donor_loss | 1.0000 |
| 5:128261732:T:TA | donor_loss | 1.0000 |
| 5:128261733:CA:C | donor_loss | 1.0000 |
| 5:128261734:A:AC | donor_gain | 1.0000 |
| 5:128261734:ACAG:A | donor_gain | 1.0000 |
| 5:128261735:C:CA | donor_gain | 1.0000 |
| 5:128261735:CA:C | donor_gain | 1.0000 |
| 5:128261735:CAG:C | donor_gain | 1.0000 |
| 5:128261735:CAGC:C | donor_gain | 1.0000 |
| 5:128261735:CAGCA:C | donor_gain | 1.0000 |
| 5:128261763:T:TA | donor_gain | 1.0000 |
| 5:128261903:AGTGG:A | acceptor_gain | 1.0000 |
| 5:128261904:GTGG:G | acceptor_gain | 1.0000 |
| 5:128261905:TGG:T | acceptor_gain | 1.0000 |
| 5:128261906:GG:G | acceptor_gain | 1.0000 |
| 5:128261908:C:CC | acceptor_gain | 1.0000 |
| 5:128261912:T:C | acceptor_gain | 1.0000 |
| 5:128261912:T:TC | acceptor_gain | 1.0000 |
| 5:128263423:AC:A | donor_gain | 1.0000 |
| 5:128263424:CC:C | donor_gain | 1.0000 |
| 5:128271995:TCA:T | donor_loss | 1.0000 |
| 5:128271997:A:AC | donor_gain | 1.0000 |
| 5:128271998:C:CC | donor_gain | 1.0000 |
| 5:128271998:CCGA:C | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000002122 (5:128396993 T>C), RS1000009705 (5:128288730 A>C,T), RS1000037622 (5:128354222 A>G), RS1000039159 (5:128535446 T>C), RS1000045244 (5:128478155 T>C), RS1000049515 (5:128294084 G>A), RS1000054378 (5:128461389 T>G), RS1000058654 (5:128343755 C>T), RS1000080380 (5:128294322 G>A), RS1000088916 (5:128260569 G>C), RS1000090111 (5:128347978 G>C,T), RS1000107571 (5:128355574 G>A), RS1000107946 (5:128461113 G>A), RS1000112136 (5:128500938 G>A), RS1000114701 (5:128444318 C>T)
Disease associations
OMIM: gene MIM:612570 | disease phenotypes: MIM:121050, MIM:607086, MIM:616118, MIM:130000, MIM:208150, MIM:609192, MIM:123100, MIM:154700, MIM:607087, MIM:614429
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital contractural arachnodactyly | Definitive | Autosomal dominant |
| macular degeneration, early-onset | Limited | Autosomal dominant |
| carpal tunnel syndrome | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital contractural arachnodactyly | Definitive | AD |
Mondo (19): congenital contractural arachnodactyly (MONDO:0007363), familial thoracic aortic aneurysm and aortic dissection (MONDO:0019625), macular degeneration, early-onset (MONDO:0014501), Ehlers-Danlos syndrome (MONDO:0020066), connective tissue disorder (MONDO:0003900), prostate cancer (MONDO:0008315), brain ischemia (MONDO:0005299), fetal akinesia deformation sequence 1 (MONDO:0100101), Loeys-Dietz syndrome (MONDO:0018954), brain aneurysm (MONDO:0005291), dilated cardiomyopathy (MONDO:0005021), craniosynostosis (MONDO:0015469), Marfan syndrome (MONDO:0007947), Ehlers-Danlos syndrome, vascular type (MONDO:0017314), congenital heart disease (MONDO:0005453)
Orphanet (12): Congenital contractural arachnodactyly (Orphanet:115), Familial thoracic aortic aneurysm and aortic dissection (Orphanet:91387), Ehlers-Danlos syndrome (Orphanet:98249), Familial prostate cancer (Orphanet:1331), Fetal akinesia deformation sequence (Orphanet:994), Loeys-Dietz syndrome (Orphanet:60030), Dilated cardiomyopathy (Orphanet:217604), Craniosynostosis (Orphanet:1531), Marfan syndrome type 1 (Orphanet:284963), Marfan syndrome (Orphanet:558), Vascular Ehlers-Danlos syndrome (Orphanet:286), NON RARE IN EUROPE: Ventricular septal defect (Orphanet:1480)
HPO phenotypes
67 total (30 of 67 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000218 | High palate |
| HP:0000248 | Brachycephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000347 | Micrognathia |
| HP:0000470 | Short neck |
| HP:0000545 | Myopia |
| HP:0000608 | Macular degeneration |
| HP:0000767 | Pectus excavatum |
| HP:0000768 | Pectus carinatum |
| HP:0000938 | Osteopenia |
| HP:0001083 | Ectopia lentis |
| HP:0001166 | Arachnodactyly |
| HP:0001181 | Adducted thumb |
| HP:0001239 | Wrist flexion contracture |
| HP:0001270 | Motor delay |
| HP:0001371 | Flexion contracture |
| HP:0001377 | Limited elbow extension |
| HP:0001387 | Joint stiffness |
| HP:0001519 | Disproportionate tall stature |
| HP:0001533 | Slender build |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0001634 | Mitral valve prolapse |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001647 | Bicuspid aortic valve |
| HP:0001653 | Mitral regurgitation |
| HP:0001762 | Talipes equinovarus |
| HP:0001836 | Camptodactyly of toe |
| HP:0001840 | Metatarsus adductus |
GWAS associations
38 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000426_13 | Obesity (extreme) | 4.000000e-06 |
| GCST001263_16 | Height | 4.000000e-06 |
| GCST001531_11 | Temperament | 9.000000e-06 |
| GCST002579_18 | Heschl’s gyrus morphology | 5.000000e-06 |
| GCST002715_5 | Breastfeeding duration | 4.000000e-06 |
| GCST003475_8 | Beard thickness | 1.000000e-06 |
| GCST003487_9 | Response to fenofibrate (total cholesterol levels) | 5.000000e-06 |
| GCST003542_108 | Night sleep phenotypes | 3.000000e-06 |
| GCST003784_7 | Multiple system atrophy | 6.000000e-06 |
| GCST004279_17 | Systolic blood pressure | 8.000000e-12 |
| GCST005580_110 | Intraocular pressure | 3.000000e-08 |
| GCST006061_150 | Atrial fibrillation | 2.000000e-07 |
| GCST006979_118 | Heel bone mineral density | 1.000000e-27 |
| GCST006979_119 | Heel bone mineral density | 6.000000e-10 |
| GCST006979_120 | Heel bone mineral density | 2.000000e-19 |
| GCST007094_196 | Diastolic blood pressure | 2.000000e-07 |
| GCST007096_40 | Pulse pressure | 1.000000e-06 |
| GCST007099_205 | Systolic blood pressure | 2.000000e-10 |
| GCST007267_207 | Systolic blood pressure | 9.000000e-22 |
| GCST007269_238 | Pulse pressure | 9.000000e-15 |
| GCST007927_53 | Medication use (beta blocking agents) | 2.000000e-11 |
| GCST007928_97 | Medication use (diuretics) | 7.000000e-15 |
| GCST007929_31 | Medication use (calcium channel blockers) | 1.000000e-11 |
| GCST008839_383 | Height | 3.000000e-10 |
| GCST008839_584 | Height | 5.000000e-13 |
| GCST009734_7 | Severe aplastic anemia | 5.000000e-06 |
| GCST010002_37 | Refractive error | 9.000000e-11 |
| GCST010701_65 | Cortical surface area (MOSTest) | 1.000000e-09 |
| GCST010702_168 | Subcortical volume (MOSTest) | 1.000000e-17 |
| GCST010703_157 | Brain morphology (MOSTest) | 3.000000e-09 |
EFO canonical traits (16, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004825 | temperament and character inventory |
| EFO:0006864 | breastfeeding duration |
| EFO:0007806 | total cholesterol change measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0006336 | diastolic blood pressure |
| EFO:0005763 | pulse pressure measurement |
| EFO:0009929 | Beta blocking agent use measurement |
| EFO:0009928 | Diuretic use measurement |
| EFO:0009930 | Calcium channel blocker use measurement |
| EFO:0006927 | severe aplastic anemia |
| EFO:0004346 | neuroimaging measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0005213 | central corneal thickness |
MeSH disease descriptors (15)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002545 | Brain Ischemia | C10.228.140.300.150; C14.907.253.092 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002349 | Carpal Tunnel Syndrome | C10.668.829.500.500.200; C10.668.829.550.200; C26.844.150.206 |
| D003240 | Connective Tissue Diseases | C17.300 |
| D003398 | Craniosynostoses | C05.116.099.370.894.232; C05.660.207.240; C05.660.906.364; C16.131.621.207.240; C16.131.621.906.364 |
| D004535 | Ehlers-Danlos Syndrome | C14.907.454.240; C15.378.463.515.240; C16.131.831.428; C16.320.850.260; C17.300.200.310; C17.800.804.428; C17.800.827.260 |
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
| D006345 | Heart Septal Defects, Ventricular | C14.240.400.560.540; C14.280.400.560.540; C16.131.240.400.560.540 |
| D002532 | Intracranial Aneurysm | C10.228.140.300.510.600; C14.907.055.635; C14.907.253.560.300 |
| D055947 | Loeys-Dietz Syndrome | C05.660.207.532; C14.907.055.239.587; C14.907.109.139.587; C16.131.077.537; C16.320.510 |
| D008382 | Marfan Syndrome | C05.116.099.674; C14.240.400.725; C14.280.400.725; C16.131.077.550; C16.131.240.400.720; C16.320.540; C17.300.500 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| D013285 | Strabismus | C10.292.562.887; C11.590.810 |
| C564627 | Aortic Aneurysm, Familial Thoracic 2 (supp.) | |
| C536211 | Congenital contractural arachnodactyly (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs12656510 | FBN2 | 0.00 | 0 |
CTD chemical–gene interactions
88 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases expression | 6 |
| sodium arsenite | affects expression, decreases expression, affects cotreatment, increases abundance, increases expression | 5 |
| Tretinoin | decreases expression, decreases reaction | 4 |
| bisphenol A | decreases expression, increases methylation, affects cotreatment | 3 |
| Aflatoxin B1 | increases expression, affects expression | 3 |
| methylmercuric chloride | decreases expression, increases expression | 2 |
| arsenite | decreases reaction, decreases expression, affects binding | 2 |
| cobaltous chloride | decreases expression, decreases secretion | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, decreases methylation | 2 |
| Dexamethasone | increases expression, affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| Genistein | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| 2,4,6-tribromophenol | increases expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, increases oxidation | 1 |
| propionaldehyde | increases expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| kojic acid | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| o,p’-DDT | increases expression | 1 |
| sulforaphane | decreases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
Cellosaurus cell lines
2 cell lines: 1 finite cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_HQ15 | GM21995 | Finite cell line | Female |
| CVCL_WN17 | HELPi001-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
432 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00277563 | PHASE4 | COMPLETED | Short and Long Term Exposure to Unique, Time-Varying Pulsed Electro-Magnetic Fields in Refractory Carpal Tunnel Syndrome |
| NCT00678314 | PHASE4 | COMPLETED | Patient Controlled Regional Analgesia Following Carpal Tunnel Release: A Double-Blind Study Using Distal Perineural Catheters |
| NCT00904202 | PHASE4 | COMPLETED | A Study Of Lidocaine Patch 5% Alone, Gabapentin Alone, And Lidocaine Patch 5% And Gabapentin In Combination For The Relief Of Pain In Patients With Diverse Peripheral Neuropathic Pain Conditions |
| NCT01310218 | PHASE4 | COMPLETED | Length of Post Operative Dressing After Carpal Tunnel Release |
| NCT01588158 | PHASE4 | TERMINATED | Patient Satisfaction With Pain Relief After Ambulatory Hand Surgery |
| NCT01751347 | PHASE4 | COMPLETED | Bupivacaine Versus Lidocaine Local Anesthesia |
| NCT02038452 | PHASE4 | COMPLETED | Injection Versus Splinting in Carpal Tunnel Syndrome |
| NCT02140632 | PHASE4 | COMPLETED | Efficacy Study of Local Steroid Injection and Wrist Splinting for Carpal Tunnel Syndrome |
| NCT02652390 | PHASE4 | COMPLETED | Local Steroid Injection vs Placebo in Carpal Tunnel Syndrome |
| NCT03196817 | PHASE4 | UNKNOWN | Non-surgical Treatment of Carpal Tunnel Syndrome: Night Splint Versus Local Corticosteroid Infiltration |
| NCT03432858 | PHASE4 | COMPLETED | Preoperative Antibiotics for Carpal Tunnel Release Surgery |
| NCT03649763 | PHASE4 | COMPLETED | Onset and Duration of Forearm Nerve Blockade |
| NCT03792945 | PHASE4 | COMPLETED | Comparison of the Efficacy of Corticosteroid Injection and ESWT in Patients With CTS |
| NCT03802448 | PHASE4 | COMPLETED | Myofascial Release on Electrophysiological Measures of Pregnant Women With CTS |
| NCT03867539 | PHASE4 | RECRUITING | Exparel and Education to Avoid Opioids After Carpal Tunnel Release |
| NCT04017390 | PHASE4 | WITHDRAWN | The Effect of Theraworx Foam in Carpal Tunnel Syndrome |
| NCT04025203 | PHASE4 | COMPLETED | Pain Reduction and Changes in Upper Limb Function Produced by Different Treatments in Carpal Tunnel Syndrome |
| NCT04119739 | PHASE4 | COMPLETED | Pain Reduction Produced by Different Treatments in Carpal Tunnel Syndrome |
| NCT04245371 | PHASE4 | COMPLETED | Lidocaine Patch 1.8% for Moderate to Severe Pain From Carpal Tunnel Syndrome |
| NCT04285281 | PHASE4 | COMPLETED | Oral Gabapentin and Median Nerve Mobilization in the Treatment of Carpal Tunnel Syndrome |
| NCT04328805 | PHASE4 | COMPLETED | Ibuprofen and Neural Mobilization Treatment in Carpal Tunnel Syndrome. |
| NCT04460521 | PHASE4 | RECRUITING | The ACTS Trial: N-acetylcysteine (NAC) and Night-splinting as a Non-operative Treatment for Carpal Tunnel Syndrome |
| NCT04515966 | PHASE4 | UNKNOWN | A Comparison of Ultrasound-guided Steroid Injection With Wrist Splint in Carpal Tunnel Syndrome |
| NCT04767724 | PHASE4 | COMPLETED | Extracorporeal Shock Wave Versus Local Corticosteroid Injection for Carpal Tunnel Syndrome |
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Related Atlas pages
- Associated diseases: macular degeneration, early-onset, congenital contractural arachnodactyly, carpal tunnel syndrome 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): aortic aneurysm, familial thoracic 2, brain aneurysm, brain ischemia, carpal tunnel syndrome, congenital contractural arachnodactyly, connective tissue disorder, craniosynostosis, Ehlers-Danlos syndrome, Ehlers-Danlos syndrome, vascular type, familial thoracic aortic aneurysm and aortic dissection, fetal akinesia deformation sequence 1, Loeys-Dietz syndrome, macular degeneration, early-onset, Marfan syndrome, multiple system atrophy, strabismus, ventricular septal defect