FBXO38-DT

Summary

FBXO38-DT (FBXO38 divergent transcript, HGNC:55589) is a long non-coding RNA gene on chromosome 5q32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55589
Approved symbol	FBXO38-DT
Name	FBXO38 divergent transcript
Location	5q32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247199
Ensembl biotype	lncRNA
Entrez	102546294
RNAcentral	URS000075A1DF — lncRNA, 2100 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000501695, ENST00000648571, ENST00000655946, ENST00000657331, ENST00000661004, ENST00000661718, ENST00000661905, ENST00000663936, ENST00000665055, ENST00000665452, ENST00000667608, ENST00000667841, ENST00000669063, ENST00000669375, ENST00000671159, ENST00000836304, ENST00000836305, ENST00000836306, ENST00000836307, ENST00000836308, ENST00000836309

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501695 — 5 exons

Exon	Start	End
ENSE00001960784	148268307	148269004
ENSE00001975396	148290252	148290995
ENSE00002095327	148308004	148308165
ENSE00002115497	148383499	148383868
ENSE00002139613	148378702	148378845

Expression profiles

Bgee: expression breadth ubiquitous, 161 present calls, max score 93.23.

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.23	gold quality
colonic epithelium	UBERON:0000397	87.58	gold quality
bone marrow cell	CL:0002092	82.75	gold quality
adrenal tissue	UBERON:0018303	76.72	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.61	gold quality
cortical plate	UBERON:0005343	74.37	gold quality
lower esophagus mucosa	UBERON:0035834	73.84	gold quality
esophagus mucosa	UBERON:0002469	73.55	gold quality
skin of abdomen	UBERON:0001416	73.23	gold quality
skin of leg	UBERON:0001511	72.61	gold quality
apex of heart	UBERON:0002098	72.16	gold quality
sural nerve	UBERON:0015488	72.06	gold quality
ganglionic eminence	UBERON:0004023	72.02	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	70.28	gold quality
uterine cervix	UBERON:0000002	69.94	gold quality
ectocervix	UBERON:0012249	69.83	gold quality
ventricular zone	UBERON:0003053	69.74	gold quality
zone of skin	UBERON:0000014	69.26	gold quality
right ovary	UBERON:0002118	69.25	gold quality
tibial nerve	UBERON:0001323	68.63	gold quality
heart left ventricle	UBERON:0002084	68.60	gold quality
calcaneal tendon	UBERON:0003701	68.51	gold quality
left ovary	UBERON:0002119	68.49	gold quality
right atrium auricular region	UBERON:0006631	68.45	gold quality
esophagus	UBERON:0001043	68.17	gold quality
tonsil	UBERON:0002372	68.12	gold quality
popliteal artery	UBERON:0002250	68.02	gold quality
tibial artery	UBERON:0007610	67.99	gold quality
vagina	UBERON:0000996	67.86	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.01

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.