FDX2
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Also known as MGC19604
Summary
FDX2 (ferredoxin 2, HGNC:30546) is a protein-coding gene on chromosome 19p13.2, encoding Ferredoxin-2, mitochondrial (Q6P4F2). Electron donor, of the core iron-sulfur cluster (ISC) assembly complex, that acts to reduce the persulfide into sulfide during [2Fe-2S] clusters assembly on the scaffolding protein ISCU. It is a selective cancer dependency (DepMap: 66.9% of cell lines).
This gene encodes a member of the ferredoxin family. The encoded protein contains a 2Fe-2S ferredoxin-type domain and is essential for heme A and Fe/S protein biosynthesis. Mutation in FDX1L gene is associated with mitochondrial muscle myopathy.
Source: NCBI Gene 112812 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 3
- Clinical variants (ClinVar): 145 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 40
- Cancer dependency (DepMap): dependent in 66.9% of screened cell lines
- MANE Select transcript:
NM_001397406
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30546 |
| Approved symbol | FDX2 |
| Name | ferredoxin 2 |
| Location | 19p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC19604 |
| Ensembl gene | ENSG00000267673 |
| Ensembl biotype | protein_coding |
| OMIM | 614585 |
| Entrez | 112812 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 4 retained_intron, 4 protein_coding
ENST00000343376, ENST00000393708, ENST00000453681, ENST00000460631, ENST00000486454, ENST00000492239, ENST00000494368, ENST00000706663
RefSeq mRNA: 1 — MANE Select: NM_001397406
NM_001397406
CCDS: CCDS32905
Canonical transcript exons
ENST00000393708 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003461639 | 10315705 | 10315759 |
| ENSE00003595551 | 10315386 | 10315492 |
| ENSE00003650166 | 10310853 | 10310940 |
| ENSE00003996519 | 10310045 | 10310642 |
| ENSE00003996520 | 10315852 | 10316015 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 96.49.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.4295 / max 185.8204, expressed in 1788 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 179108 | 13.9334 | 1785 |
| 179107 | 0.2593 | 91 |
| 179106 | 0.2368 | 119 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| prefrontal cortex | UBERON:0000451 | 96.49 | gold quality |
| frontal cortex | UBERON:0001870 | 95.79 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 95.48 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 95.25 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.23 | gold quality |
| cerebral cortex | UBERON:0000956 | 95.07 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.00 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 94.73 | gold quality |
| nucleus accumbens | UBERON:0001882 | 94.42 | gold quality |
| hypothalamus | UBERON:0001898 | 94.35 | gold quality |
| substantia nigra | UBERON:0002038 | 94.16 | gold quality |
| temporal lobe | UBERON:0001871 | 94.09 | gold quality |
| Ammon’s horn | UBERON:0001954 | 94.09 | gold quality |
| amygdala | UBERON:0001876 | 94.06 | gold quality |
| putamen | UBERON:0001874 | 93.68 | gold quality |
| primary visual cortex | UBERON:0002436 | 93.38 | gold quality |
| caudate nucleus | UBERON:0001873 | 93.30 | gold quality |
| brain | UBERON:0000955 | 92.76 | gold quality |
| apex of heart | UBERON:0002098 | 91.31 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 89.87 | gold quality |
| pituitary gland | UBERON:0000007 | 89.77 | gold quality |
| adenohypophysis | UBERON:0002196 | 89.43 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 89.33 | gold quality |
| right adrenal gland | UBERON:0001233 | 89.11 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.81 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.53 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 88.50 | gold quality |
| left adrenal gland | UBERON:0001234 | 88.49 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 88.35 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.34 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-13 | yes | 405.26 |
| E-ANND-3 | yes | 3.23 |
Regulation
Is transcription factor: no
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 66.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 7)
- unique conformational change is observed when holo hFd2 is warmed to physiological temperatures, or higher (PMID:23208207)
- Fdx2 is the second component of the Fe-S cluster biogenesis machinery, the first being IscU that is associated with isolated mitochondrial myopathy. (PMID:24281368)
- FDX1 and FDX2 both bind NFS1 and donate electrons for iron-sulfur cluster biosynthesis. (PMID:28001042)
- The phenotype was mapped to the same homozygous missense mutation in FDX2 (c.431C > T, p.P144L). The deleterious effect of the mutation was validated by real-time reverse transcription polymerase chain reaction and western blot analysis, which demonstrated normal expression of FDX2 mRNA but severely reduced expression of FDX2 protein in muscle tissue. (PMID:30010796)
- By binding zinc-free ISCU, iron drives persulfide uptake from NFS1 and allows persulfide reduction into sulfide by FDX2, thereby coordinating sulfide production with its availability to generate Fe-S clusters. FXN stimulates the whole process by accelerating persulfide transfer. This reconstitution recapitulates physiological conditions which provides a model for Fe-S cluster biosynthesis on the scaffold protein ISCU. (PMID:31395877)
- Functional spectrum and specificity of mitochondrial ferredoxins FDX1 and FDX2. (PMID:36280795)
- Unraveling the molecular determinants of a rare human mitochondrial disorder caused by the P144L mutation of FDX2. (PMID:39467201)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fdx2 | ENSDARG00000052190 |
| mus_musculus | Fdx2 | ENSMUSG00000079677 |
| rattus_norvegicus | Fdx2 | ENSRNOG00000023020 |
| drosophila_melanogaster | Fdx1 | FBGN0011769 |
| caenorhabditis_elegans | WBGENE00013532 |
Paralogs (1): FDX1 (ENSG00000137714)
Protein
Protein identifiers
Ferredoxin-2, mitochondrial — Q6P4F2 (reviewed: Q6P4F2)
Alternative names: Adrenodoxin-like protein, Ferredoxin-1-like protein
All UniProt accessions (3): A0A0A0MTS8, A0A9L9PXQ6, Q6P4F2
UniProt curated annotations — full annotation on UniProt →
Function. Electron donor, of the core iron-sulfur cluster (ISC) assembly complex, that acts to reduce the persulfide into sulfide during [2Fe-2S] clusters assembly on the scaffolding protein ISCU. The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5. Essential for coenzyme Q biosynthesis: together with FDXR, transfers the electrons required for the hydroxylation reaction performed by COQ6.
Subunit / interactions. Component of the mitochondrial core iron-sulfur cluster (ISC) complex composed of NFS1, LYRM4, NDUFAB1, ISCU, FXN, and FDX2; this complex is a heterohexamer containing two copies of each monomer. Form a heterodimer complex with NFS1. Interacts (in both their reduced and oxidized states) with the cysteine desulfurase complex; this interaction stimulates cysteine desulfurase activity, and serves as a reductant for Fe-S cluster assembly.
Subcellular location. Mitochondrion. Mitochondrion matrix.
Tissue specificity. Widely expressed, with highest levels in testis, kidney and brain (at protein level). Expressed in muscle (at protein level). Expressed in fibroblasts (at protein level).
Disease relevance. Mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy (MEOAL) [MIM:251900] An autosomal recessive neuromuscular disorder characterized by childhood onset of recurrent episodes of proximal weakness and myalgia often precipitated by exercise, infections or low temperature. Additional features are optic atrophy, axonal polyneuropathy, and reversible or partially reversible leukoencephalopathy. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 [2Fe-2S] cluster.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the adrenodoxin/putidaredoxin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6P4F2-1 | 1 | yes |
| Q6P4F2-2 | 2 |
RefSeq proteins (1): NP_001384335* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001041 | 2Fe-2S_ferredoxin-type | Domain |
| IPR001055 | Adrenodoxin-like | Family |
| IPR012675 | Beta-grasp_dom_sf | Homologous_superfamily |
| IPR018298 | Adrenodoxin_Fe-S_BS | Binding_site |
| IPR036010 | 2Fe-2S_ferredoxin-like_sf | Homologous_superfamily |
Pfam: PF00111
UniProt features (23 total): strand 7, helix 5, binding site 4, transit peptide 1, chain 1, sequence conflict 1, domain 1, region of interest 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2Y5C | X-RAY DIFFRACTION | 1.7 |
| 8RMC | ELECTRON MICROSCOPY | 2.26 |
| 8RMF | ELECTRON MICROSCOPY | 2.33 |
| 8RMG | ELECTRON MICROSCOPY | 2.46 |
| 8RMD | ELECTRON MICROSCOPY | 2.52 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6P4F2-F1 | 77.49 | 0.52 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 105; 111; 114; 151
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-1362409 | Mitochondrial iron-sulfur cluster biogenesis |
| R-HSA-196108 | Pregnenolone biosynthesis |
| R-HSA-211976 | Endogenous sterols |
| R-HSA-2395516 | Electron transport from NADPH to Ferredoxin |
| R-HSA-5579026 | Defective CYP11A1 causes AICSR |
MSigDB gene sets: 152 (showing top):
REACTOME_BIOLOGICAL_OXIDATIONS, WWTAAGGC_UNKNOWN, REACTOME_ENDOGENOUS_STEROLS, GOBP_KETONE_METABOLIC_PROCESS, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GOBP_ELECTRON_TRANSPORT_CHAIN, OCT1_06, GOBP_KETONE_BIOSYNTHETIC_PROCESS, AACTTT_UNKNOWN, CCCAGAG_MIR326, MODULE_95, NKX3A_01, GOBP_QUINONE_METABOLIC_PROCESS, GOCC_MITOCHONDRIAL_MATRIX
GO Biological Process (6): ubiquinone biosynthetic process (GO:0006744), iron-sulfur cluster assembly (GO:0016226), electron transport chain (GO:0022900), [2Fe-2S] cluster assembly (GO:0044571), [4Fe-4S] cluster assembly (GO:0044572), P450-containing electron transport chain (GO:0140647)
GO Molecular Function (5): electron transfer activity (GO:0009055), metal ion binding (GO:0046872), 2 iron, 2 sulfur cluster binding (GO:0051537), protein binding (GO:0005515), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (3): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), iron-sulfur cluster assembly complex (GO:1990229)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Metabolism | 1 |
| Metabolism of steroid hormones | 1 |
| Cytochrome P450 - arranged by substrate type | 1 |
| Mitochondrial iron-sulfur cluster biogenesis | 1 |
| Metabolic disorders of biological oxidation enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| iron-sulfur cluster assembly | 2 |
| cytoplasm | 2 |
| ubiquinone metabolic process | 1 |
| quinone biosynthetic process | 1 |
| metallo-sulfur cluster assembly | 1 |
| generation of precursor metabolites and energy | 1 |
| electron transport chain | 1 |
| molecular_function | 1 |
| cation binding | 1 |
| iron-sulfur cluster binding | 1 |
| binding | 1 |
| metal cluster binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
2364 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FDX2 | LYRM4 | Q9HD34 | 888 |
| FDX2 | ISCU | Q9H1K1 | 876 |
| FDX2 | FDXR | P22570 | 871 |
| FDX2 | NFU1 | Q9UMS0 | 815 |
| FDX2 | NFS1 | Q9Y697 | 810 |
| FDX2 | IBA57 | Q5T440 | 806 |
| FDX2 | ISCA2 | Q86U28 | 798 |
| FDX2 | ISCA1 | Q9BUE6 | 793 |
| FDX2 | FXN | Q16595 | 743 |
| FDX2 | BOLA3 | Q53S33 | 737 |
| FDX2 | GLRX5 | Q86SX6 | 712 |
| FDX2 | LIAS | O43766 | 678 |
| FDX2 | BOLA1 | Q9Y3E2 | 666 |
| FDX2 | ABCB7 | O75027 | 664 |
| FDX2 | HSCB | Q8IWL3 | 644 |
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LHX4 | FDX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FDX2 | LHX4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEOX2 | FDX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GFPT2 | GFPT1 | psi-mi:“MI:0914”(association) | 0.350 |
| C6orf62 | MAP2K7 | psi-mi:“MI:0914”(association) | 0.350 |
| FDX2 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.000 |
ESM2 similar proteins: A2YQD9, O04090, O04166, O04683, O80429, P00220, P00221, P00228, P00257, P00258, P02902, P04669, P07088, P07839, P08817, P09911, P10109, P10352, P13216, P15543, P16972, P17650, P21149, P23235, P24483, P25701, P25702, P27787, P27788, P27789, P37193, P46656, P83523, P83527, P83582, P94044, Q05B51, Q08C57, Q0J8M2, Q12184
Diamond homologs: D5IGG4, G2IN77, P00257, P00258, P00259, P0A9R4, P0A9R5, P0A9R6, P10109, P13216, P24483, P29330, P33007, P37098, P37193, P43493, P46656, P80306, Q05B51, Q08C57, Q12184, Q1RJ69, Q4UKL2, Q51383, Q5FWQ0, Q5S3I4, Q6P4F2, Q8SZA8, Q92J08, Q9AKC4, Q9AKH1, Q9AKM6, Q9CPW2, Q9ZDW6, W8X5L3, X5CFH4, X5CWH9, Q8S904, Q8SV19, Q9M0V0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
145 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 42 |
| Likely benign | 72 |
| Benign | 22 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3361041 | NM_001397406.1(FDX2):c.196del (p.Asp66fs) | Pathogenic |
| 623644 | NM_001397406.1(FDX2):c.422C>T (p.Pro141Leu) | Likely pathogenic |
| 985120 | NM_001397406.1(FDX2):c.3G>T (p.Met1Ile) | Likely pathogenic |
SpliceAI
733 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:10310524:T:TA | donor_gain | 1.0000 |
| 19:10310849:TCA:T | donor_loss | 1.0000 |
| 19:10310851:A:AG | donor_loss | 1.0000 |
| 19:10310852:C:T | donor_loss | 1.0000 |
| 19:10310852:CCT:C | donor_gain | 1.0000 |
| 19:10310938:CCC:C | acceptor_gain | 1.0000 |
| 19:10310939:CC:C | acceptor_gain | 1.0000 |
| 19:10310939:CCC:C | acceptor_gain | 1.0000 |
| 19:10310940:CC:C | acceptor_gain | 1.0000 |
| 19:10310941:C:CC | acceptor_gain | 1.0000 |
| 19:10310497:TGGGG:T | donor_gain | 0.9900 |
| 19:10310519:G:C | donor_gain | 0.9900 |
| 19:10310638:CTTCC:C | acceptor_gain | 0.9900 |
| 19:10310641:CC:C | acceptor_gain | 0.9900 |
| 19:10310642:CC:C | acceptor_gain | 0.9900 |
| 19:10310643:C:CC | acceptor_gain | 0.9900 |
| 19:10310643:CT:C | acceptor_loss | 0.9900 |
| 19:10310644:T:G | acceptor_loss | 0.9900 |
| 19:10310648:G:C | acceptor_gain | 0.9900 |
| 19:10310648:G:GC | acceptor_gain | 0.9900 |
| 19:10310851:A:AC | donor_gain | 0.9900 |
| 19:10310852:C:CC | donor_gain | 0.9900 |
| 19:10310852:CCTCT:C | donor_gain | 0.9900 |
| 19:10310936:GGCCC:G | acceptor_gain | 0.9900 |
| 19:10310937:GCCC:G | acceptor_gain | 0.9900 |
| 19:10310938:CCCC:C | acceptor_gain | 0.9900 |
| 19:10310941:C:CA | acceptor_loss | 0.9900 |
| 19:10310941:C:T | acceptor_gain | 0.9900 |
| 19:10310941:CT:C | acceptor_loss | 0.9900 |
| 19:10310942:T:A | acceptor_loss | 0.9900 |
AlphaMissense
1193 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:10310522:G:C | N175K | 0.997 |
| 19:10310522:G:T | N175K | 0.997 |
| 19:10310547:A:G | F167S | 0.997 |
| 19:10310586:C:G | C154S | 0.997 |
| 19:10310587:A:G | C154R | 0.997 |
| 19:10310587:A:T | C154S | 0.997 |
| 19:10310907:C:T | C117Y | 0.997 |
| 19:10310908:A:G | C117R | 0.997 |
| 19:10310916:C:T | C114Y | 0.997 |
| 19:10310917:A:G | C114R | 0.997 |
| 19:10310934:C:T | C108Y | 0.997 |
| 19:10310905:G:C | H118D | 0.996 |
| 19:10310916:C:G | C114S | 0.996 |
| 19:10310917:A:T | C114S | 0.996 |
| 19:10310589:C:T | G153D | 0.995 |
| 19:10310934:C:G | C108S | 0.995 |
| 19:10310935:A:G | C108R | 0.995 |
| 19:10310935:A:T | C108S | 0.995 |
| 19:10315412:G:T | A97D | 0.995 |
| 19:10310586:C:T | C154Y | 0.994 |
| 19:10310590:C:G | G153R | 0.994 |
| 19:10310599:A:G | S150P | 0.994 |
| 19:10310915:G:C | C114W | 0.994 |
| 19:10310628:A:G | L140P | 0.993 |
| 19:10310907:C:A | C117F | 0.993 |
| 19:10315424:A:T | V93D | 0.993 |
| 19:10315478:A:G | F75S | 0.993 |
| 19:10310592:A:T | L152Q | 0.992 |
| 19:10310906:G:C | C117W | 0.992 |
| 19:10310907:C:G | C117S | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000881031 (19:10316684 G>A,C), RS1001053147 (19:10313663 A>ATATG), RS1001116323 (19:10313535 C>T), RS1001245362 (19:10317612 G>A,C,T), RS1003470226 (19:10314929 C>G,T), RS1003520128 (19:10311696 G>A), RS1003544808 (19:10312970 C>T), RS1004173300 (19:10315321 T>A,G), RS1005005494 (19:10317404 C>A), RS1005115639 (19:10316303 T>C), RS1005468013 (19:10315032 T>G), RS1005480081 (19:10317264 T>A,C), RS1005518955 (19:10314726 C>CT), RS1005869557 (19:10312159 C>G,T), RS1005946978 (19:10309855 G>C)
Disease associations
OMIM: gene MIM:614585 | disease phenotypes: MIM:251900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy | Strong | Autosomal recessive |
| inborn mitochondrial myopathy | Strong | Autosomal recessive |
Mondo (2): inborn mitochondrial myopathy (MONDO:0009637), mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy (MONDO:0020714)
Orphanet (1): Mitochondrial myopathy (Orphanet:206966)
HPO phenotypes
40 total (30 of 40 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000158 | Macroglossia |
| HP:0000505 | Visual impairment |
| HP:0000508 | Ptosis |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000821 | Hypothyroidism |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001265 | Hyporeflexia |
| HP:0001270 | Motor delay |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001324 | Muscle weakness |
| HP:0001347 | Hyperreflexia |
| HP:0001427 | Mitochondrial inheritance |
| HP:0001761 | Pes cavus |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001935 | Microcytic anemia |
| HP:0002094 | Dyspnea |
| HP:0002151 | Increased circulating lactate concentration |
| HP:0002240 | Hepatomegaly |
| HP:0002515 | Waddling gait |
| HP:0002913 | Myoglobinuria |
| HP:0002919 | Ketonuria |
| HP:0003128 | Lactic acidosis |
| HP:0003201 | Rhabdomyolysis |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003325 | Limb-girdle muscle weakness |
| HP:0003326 | Myalgia |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002740_28 | Inflammatory skin disease | 8.000000e-08 |
| GCST004131_88 | Inflammatory bowel disease | 2.000000e-11 |
| GCST004132_111 | Crohn’s disease | 3.000000e-13 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D017240 | Mitochondrial Myopathies | C05.651.460; C10.668.491.500; C18.452.660.560 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
16 total (human), top 16 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases expression | 2 |
| bisphenol A | increases expression | 1 |
| manganese chloride | decreases expression, increases abundance | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | decreases methylation, increases methylation | 1 |
| cylindrospermopsin | increases expression | 1 |
| abrine | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Manganese | decreases expression, increases abundance | 1 |
| Methapyrilene | increases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
Clinical trials (associated diseases)
40 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03323749 | PHASE3 | TERMINATED | A Trial to Evaluate Safety and Efficacy of Elamipretide Primary Mitochondrial Myopathy Followed by Open-Label Extension |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT00457314 | PHASE2 | UNKNOWN | The Effects of Exercise Versus Inactivity on People With Mitochondrial Muscle Disease |
| NCT02255422 | PHASE2 | COMPLETED | RTA 408 Capsules in Patients With Mitochondrial Myopathy - MOTOR |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04535609 | PHASE2 | COMPLETED | An Efficacy and Safety Study of 24 Week Treatment With Mavodelpar (REN001) in Primary Mitochondrial Myopathy Patients |
| NCT04641962 | PHASE2 | TERMINATED | A Study to Evaluate ASP0367 in Participants With Primary Mitochondrial Myopathy |
| NCT05590468 | PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate Vitamin B3 Derivative to Treat Mitochondrial Myopathy |
| NCT05962333 | PHASE2 | UNKNOWN | Effect and Safety MABs Administration m.3243A>G Mutation Carriers |
| NCT06754098 | PHASE2 | RECRUITING | Doxecitin and Doxribthymine in Adult Subjects With Thymidine Kinase 2 (TK2) Deficiency |
| NCT03862846 | PHASE1 | TERMINATED | A Study of the Safety of REN001 in Patients With Primary Mitochondrial Myopathy |
| NCT03888716 | PHASE1 | COMPLETED | A Phase Ia/Ib, SAD and MAD Study of of KL1333 in Healthy Subjects and Patients With Primary Mitochondrial Disease |
| NCT04086329 | PHASE1 | RECRUITING | Validation of Oxygen Nanosensor in Mitochondrial Myopathy |
| NCT05063721 | PHASE1 | COMPLETED | MABs Therapy m.3243A>G Mutation Carriers |
| NCT05569122 | PHASE1 | RECRUITING | Applying pGz in Mitochondrial Disease |
| NCT06819683 | PHASE1 | RECRUITING | Validation of Nanosensor Oxygen Measurement |
| NCT05267574 | PHASE2/PHASE3 | TERMINATED | An Open Label, Long Term Safety Study of REN001 in Primary Mitochondrial Myopathy Patients (Stride Ahead) |
| NCT02367014 | PHASE1/PHASE2 | COMPLETED | Safety, Tolerability, and Efficacy of MTP-131 for the Treatment of Mitochondrial Myopathy |
| NCT06051448 | PHASE1/PHASE2 | COMPLETED | Promoting Resilience in Stress Management (PRISM) and Clinical-focused Narrative (CFN) Pilot in Adults With Primary Mitochondrial Disease (PMD). |
| NCT00004353 | Not specified | COMPLETED | Study of the Metabolism of Pyruvate and Related Problems in Patients With Lactic Acidemia |
| NCT00004770 | Not specified | COMPLETED | Pilot Compassionate Use Study of Thioctic Acid Treatment in Mitochondrial Myopathy |
| NCT02375438 | Not specified | COMPLETED | Nutritional Assessment in Mitochondrial Cytopathy |
| NCT02895789 | Not specified | COMPLETED | Oxidative Capacity and Exercise Tolerance in Ambulatory SMA |
| NCT03432871 | Not specified | COMPLETED | Nicotinamide Riboside and Mitochondrial Biogenesis |
| NCT03513835 | Not specified | COMPLETED | Diagnostic Screening Tests and Potential Biomarkers in Mitochondrial Myopathies |
| NCT03728777 | Not specified | COMPLETED | Resveratrol Supplementation in Patients With Mitochondrial Myopathies and Skeletal Muscle Fatty Acid Oxidation Disorders |
| NCT03973203 | Not specified | COMPLETED | Niacin Supplementation in Healthy Controls and Mitochondrial Myopathy Patients |
| NCT04538521 | Not specified | COMPLETED | NiaMIT Continuation With Early-stage Mitochondrial Myopathy Patients |
| NCT05012358 | Not specified | COMPLETED | Genomic Profiling of Mitochondrial Disease - Imaging Analysis for Precise Mitochondrial Medicine |
| NCT05199246 | Not specified | COMPLETED | Assessment of Safety and Acute Effects of a Lower-limb Powered Dermoskeleton in Patients With Neuromuscular Disorders |
| NCT05199740 | Not specified | RECRUITING | mtDNA Mutation Load Analysis in Mesoangioblasts |
| NCT05200702 | Not specified | COMPLETED | Assessment of Safety and Acute Effects of a Knee-hip Powered Soft Exoskeleton in Patients With Neuromuscular Disorders |
| NCT05346627 | Not specified | RECRUITING | Home Based Personalized Training and Video Consultation in Mitochondrial Myopathies: Study of Efficacy and Tolerance. |
| NCT05554835 | Not specified | RECRUITING | Global Registry and Natural History Study for Mitochondrial Disorders |
| NCT06080568 | Not specified | COMPLETED | Human Mitochondrial Stress-driven Obesity Resistance |
| NCT06080581 | Not specified | COMPLETED | Mitochondrial Dysfunctions Driving Insulin Resistance |
| NCT06080594 | Not specified | COMPLETED | Exercise-mediated Rescue of Mitochondrial Dysfunctions Driving Insulin Resistance |
| NCT07450690 | Not specified | RECRUITING | Exercise Training Effects on Muscle Function in Adults With Mitochondrial Myopathy |
| NCT07478172 | Not specified | RECRUITING | Effects of Whole-body Electrical Muscle Stimulation Exercise on Adults With Neuromuscular Disease |
Related Atlas pages
- Associated diseases: mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy, inborn mitochondrial myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atopic eczema, inborn mitochondrial myopathy, mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy