FGB
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Summary
FGB (fibrinogen beta chain, HGNC:3662) is a protein-coding gene on chromosome 4q31.3, encoding Fibrinogen beta chain (P02675). Cleaved by the protease thrombin to yield monomers which, together with fibrinogen alpha (FGA) and fibrinogen gamma (FGG), polymerize to form an insoluble fibrin matrix.
The protein encoded by this gene is the beta component of fibrinogen, a blood-borne glycoprotein comprised of three pairs of nonidentical polypeptide chains. Following vascular injury, fibrinogen is cleaved by thrombin to form fibrin which is the most abundant component of blood clots. In addition, various cleavage products of fibrinogen and fibrin regulate cell adhesion and spreading, display vasoconstrictor and chemotactic activities, and are mitogens for several cell types. Fibrinogen serves key roles in hemostasis and antimicrobial host defense. Mutations in this gene lead to several disorders, including afibrinogenemia, dysfibrinogenemia, hypodysfibrinogenemia and thrombotic tendency.
Source: NCBI Gene 2244 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital fibrinogen deficiency (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 12
- Clinical variants (ClinVar): 270 total — 11 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 29
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_005141
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3662 |
| Approved symbol | FGB |
| Name | fibrinogen beta chain |
| Location | 4q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000171564 |
| Ensembl biotype | protein_coding |
| OMIM | 134830 |
| Entrez | 2244 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 11 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000302068, ENST00000425838, ENST00000473984, ENST00000497097, ENST00000498375, ENST00000502545, ENST00000509493, ENST00000904939, ENST00000904940, ENST00000904941, ENST00000904942, ENST00000904943, ENST00000904944, ENST00000904945, ENST00000904946, ENST00000904947
RefSeq mRNA: 9 — MANE Select: NM_005141
NM_001184741, NM_001382759, NM_001382760, NM_001382761, NM_001382762, NM_001382763, NM_001382764, NM_001382765, NM_005141
CCDS: CCDS3786
Canonical transcript exons
ENST00000302068 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001127300 | 154569514 | 154569799 |
| ENSE00001171210 | 154570419 | 154572807 |
| ENSE00001171218 | 154563011 | 154563132 |
| ENSE00003515466 | 154566489 | 154566672 |
| ENSE00003525672 | 154565808 | 154565999 |
| ENSE00003542324 | 154569182 | 154569307 |
| ENSE00003599418 | 154568381 | 154568494 |
| ENSE00003690584 | 154567593 | 154567820 |
Expression profiles
Bgee: expression breadth ubiquitous, 159 present calls, max score 99.94.
FANTOM5 (CAGE): breadth broad, TPM avg 126.4714 / max 70796.3174, expressed in 201 samples.
FANTOM5 promoters (21 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 50119 | 122.2162 | 186 |
| 50118 | 1.2488 | 89 |
| 50126 | 0.4407 | 21 |
| 50151 | 0.3943 | 15 |
| 50123 | 0.3508 | 21 |
| 50150 | 0.3311 | 16 |
| 50146 | 0.3299 | 14 |
| 50129 | 0.2513 | 19 |
| 50148 | 0.1935 | 9 |
| 50153 | 0.1423 | 12 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 99.94 | gold quality |
| liver | UBERON:0002107 | 99.94 | gold quality |
| type B pancreatic cell | CL:0000169 | 94.68 | gold quality |
| islet of Langerhans | UBERON:0000006 | 87.96 | gold quality |
| olfactory bulb | UBERON:0002264 | 86.45 | gold quality |
| diaphragm | UBERON:0001103 | 84.90 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.12 | gold quality |
| pancreatic ductal cell | CL:0002079 | 81.04 | silver quality |
| adult mammalian kidney | UBERON:0000082 | 80.94 | gold quality |
| nephron tubule | UBERON:0001231 | 80.24 | gold quality |
| metanephros cortex | UBERON:0010533 | 80.19 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 79.39 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.30 | gold quality |
| kidney epithelium | UBERON:0004819 | 78.26 | gold quality |
| metanephros | UBERON:0000081 | 76.75 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 76.47 | gold quality |
| kidney | UBERON:0002113 | 76.42 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 76.09 | gold quality |
| colonic epithelium | UBERON:0000397 | 75.74 | gold quality |
| decidua | UBERON:0002450 | 75.47 | gold quality |
| adrenal tissue | UBERON:0018303 | 74.76 | gold quality |
| renal glomerulus | UBERON:0000074 | 74.62 | gold quality |
| parotid gland | UBERON:0001831 | 73.84 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 73.45 | gold quality |
| pancreas | UBERON:0001264 | 73.27 | gold quality |
| myocardium | UBERON:0002349 | 72.56 | gold quality |
| body of stomach | UBERON:0001161 | 72.23 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 71.95 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 71.39 | gold quality |
| right coronary artery | UBERON:0001625 | 71.33 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9388 | yes | 16946.53 |
| E-HCAD-9 | yes | 8182.09 |
| E-CURD-98 | yes | 7671.36 |
| E-MTAB-10137 | yes | 6090.87 |
| E-MTAB-10553 | yes | 5817.32 |
| E-ENAD-27 | no | 3.27 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXA2, FOXM1, NCOA2, NR5A2
miRNA regulators (miRDB)
74 targeting FGB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-6499-3P | 99.90 | 66.38 | 1212 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-548O-3P | 99.74 | 69.30 | 2228 |
| HSA-MIR-7154-5P | 99.69 | 70.52 | 1900 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-3175 | 99.65 | 66.30 | 2031 |
| HSA-MIR-12117 | 99.50 | 67.57 | 868 |
| HSA-MIR-1224-5P | 99.48 | 65.59 | 803 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-6083 | 99.47 | 68.73 | 2393 |
| HSA-MIR-5009-3P | 99.45 | 69.43 | 1341 |
| HSA-MIR-508-5P | 99.41 | 64.25 | 1248 |
Literature-anchored findings (GeneRIF, showing 40)
- genotypes are associated with plasma fibrinogen levels in Chinese (PMID:11546832)
- There was no effect of the -854G>A beta-fibrinogen promoter polymorphism on fibrinogen, but the fibrinogen -455G>A polymorphism increased fibrinogen levels following exercise. The genotype might be clinically relevant at times of hyperfibrinogenaemia. (PMID:11858186)
- Among Iranian afirbinogenemia patients, for the first time, a nonsense mutation (3282C–>T) was found in exon 2 of the fibrinogen Bbeta-chain gene, causing truncation of the corresponding polypeptide. (PMID:12161363)
- 2 new homozygous mutations in introns 6 & 7 represent the first Bbeta-chain splicing mutations in afibrinogenemia. IVS6 + 13C > T creates a donor splice site in intron 6. IVS7 + 1G >T removes the invariant GT of intron 7 donor splice site. (PMID:12393540)
- The first prenatal diagnosis for afibrinogenemia found a novel nonsense mutation in the FGB gene, Trp467Stop (W467X). This confirms the need for intact C-terminal portions of FGB for the secretion of functional hexamers. (PMID:12511408)
- frequencies of the beta-fibrinogen 448 A allele were higher in patients with no flow-limiting stenosis after myocardial infarction (PMID:12514663)
- review of details of the structure, binding interactions, and function of each of the fibrinogen chains, FGA, FGB, FGG (PMID:12617173)
- Fibrinogen gene promoter -455 A allele as a risk factor for lacunar stroke. (PMID:12637691)
- Fibrinogen molecules from a compound FGB heterozygote with an N-terminal nonsense mutation W47X (exon 2) & a missense mutation (G444S, exon 8), can assemble but are not secreted, confirming the need for an intact FGB C-terminal domain for secretion. (PMID:12893758)
- Polymorphism of BclI betaFbg gene is associated with an increased fibrinogen plasma level. 2. There is no association between BclI polymorphism of betaFbg gene and the number of affected coronary arteries (PMID:14618197)
- suggest a possible interactive effect of cigarette smoke and the b fibrinogen gene G-455-A polymorphism in the risk of developing Legg-Perthes disease (PMID:14629463)
- a heterozygous single point mutation of T–>G at position 3356 of the patient fibrinogen Bbeta chain gene resulted in a nonsense mutation, and also resulted in a new NheI recognition sequence at this position (PMID:14629469)
- results demonstrate that the FGB beta -455 G/A polymorphism is not associated with myocardial infarction and the closely linked B beta Arg448Lys protein coding variation does not influence function nor structure of the protein in a purified system. (PMID:14652632)
- the C-terminal sequences of the beta and gamma chains of fibrinogen have roles in fibrin polymerization as well as in cell attachment (PMID:14691567)
- Erythrocyte aggregation and -455G/A polymorphism of the beta-fibrinogen gene in survivors of acute myocardial infarction. (PMID:15213870)
- Review. Genetic and environmental factors alter fibrin structure and function. This has implications for the clinical presentation of vascular disease. (PMID:15217804)
- The study demonstrates that A allele of the B beta gene FGB -455G/A polymorphism may be a susceptible predictor of the occurrence of ACI, particularly in smokers. (PMID:15300640)
- a beta-fibrinogen polymorphism may have a role in myocardial infarction (PMID:15583729)
- the basal expression of gamma-fibrinogen is regulated by a constitutive transcriptional repressor protein, hnRNP A1, and the decreased binding activity of hnRNP A1 leads to the overexpression of gamma chain in HepG2 cells that overexpress the Bbeta chain (PMID:15671034)
- the HNF-3 site in the fibrinogen beta promoter is important for IL6-induced expression, and its activity is influenced by the adjacent -148C/T polymorphism (PMID:15737987)
- Dysfibrinogenemia in the family is caused by Arg275His in the beta chain of fibrinogen and it is the first report on a Chinese family with inherited dysfibrinogenemia. (PMID:15793786)
- Bbeta-Leu353Arg is associated with impaired fibrinogen secretion, but not with hepatic endoplasmic reticulum storage disease (PMID:15842357)
- Truncation of the seven most C-terminal residues (R455-Q461) of the Bbeta chain specifically inhibits fibrinogen secretion. (PMID:16195396)
- FgB beta -148 and 448 mutational genotypes have impact on Fg concentrationi and therefore increase the risk of infarction. (PMID:16215953)
- We hypothesize that the modification of lysine by Hcys thiolactone might occur in vivo, lead to abnormal resistance of clots to lysis, and thereby contribute to the prothrombotic state associated with homocysteinemia. (PMID:16489740)
- analysis of hypofibrinogenaemia resulting from novel single nucleotide deletion at codon Bbeta58 (PMID:16601848)
- In this work we report the identification of a strong SF2/ASF binding site within exon 7 of the human fibrinogen Bbeta-chain gene (FGB). (PMID:16611940)
- results concord with the already shown link between fibrinogen concentration & fasting insulin concentration (FIC) & support the hypothesis of relationship between fibrinogen & endothelium in FIC homeostasis whose alteration may induce metabolic disorders (PMID:16697386)
- There was a complete linkage disequilibrium between fibrinogen beta -148C/T and -455G/A found in Han population with pulmonary thrmoboembolism. (PMID:16750002)
- Results of multi-allele and haplotype analysis indicated that the polymorphisms -455 G/A, -148 C/T, 448 G/A in beta fibrinogen gene were the possible risk factors associated with the occurrence of ischemic stroke in Hainan Han population. (PMID:16767673)
- findings support the notion that the homozigous variant of beta-FIB gene can raise both plasma FIB concentration and whole blood viscosity (PMID:16899909)
- Flow induced alpha2beta1 activation in cells on collagen, but not on fibronectin or fibrinogen. Conversely, alpha5beta1 and alphavbeta3 are activated on fibronectin and fibrinogen, but not collagen. (PMID:16928957)
- For the first time B:b binding is demonstrated to be mediated by natural B-knobs exposed in a fibrin monomer. (PMID:16940416)
- analysis of a novel fibrinogen Bbeta Arg264gly substitution causing hypofibrinogenaemia (PMID:16953282)
- Association of fibrinogen beta single nucleotide polymorphism FGB(-455) with severe caroltid artery disease is confirmed. (PMID:17115186)
- carriage of the GAA haplotype in FGB is associated with decreased mortality and less organ dysfunction in a cohort of critically ill patients with sepsis (PMID:17116333)
- nitric oxide synthase 3 is also related to hypertension, endothelial dysfunction and variation on serum cholesterol in young adults with acute myocardial infarction (PMID:17126309)
- REVIEW: the N-terminus of Bbeta, the C-terminus of Aalpha, and the splice variant gamma’ modulate fibrin clot structure (PMID:17414213)
- Our findings suggest that risk of glomerular microthrombosis in lupus nephritis is attributable, at least in part, to an epistatic effect of PAI-1 and FGB genes. (PMID:17469143)
- Lebanese individuals were found to have a relatively high prevalence of the A allele which may predispose them to develop cardiovascular diseases as well as thrombotic events (PMID:17497226)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fgb | ENSDARG00000008969 |
| mus_musculus | Fgb | ENSMUSG00000033831 |
| rattus_norvegicus | Fgb | ENSRNOG00000007092 |
Paralogs (25): TNC (ENSG00000041982), FCN1 (ENSG00000085265), ANGPT2 (ENSG00000091879), ANGPT4 (ENSG00000101280), FGL1 (ENSG00000104760), FN1 (ENSG00000115414), TNR (ENSG00000116147), ANGPTL1 (ENSG00000116194), TNN (ENSG00000120332), FGL2 (ENSG00000127951), FIBCD1 (ENSG00000130720), ANGPTL6 (ENSG00000130812), ANGPTL3 (ENSG00000132855), ANGPTL2 (ENSG00000136859), FCN3 (ENSG00000142748), FNDC7 (ENSG00000143107), ANGPT1 (ENSG00000154188), FCN2 (ENSG00000160339), MFAP4 (ENSG00000166482), ANGPTL4 (ENSG00000167772), TNXB (ENSG00000168477), FGG (ENSG00000171557), FGA (ENSG00000171560), ANGPTL7 (ENSG00000171819), ANGPTL5 (ENSG00000187151)
Protein
Protein identifiers
Fibrinogen beta chain — P02675 (reviewed: P02675)
All UniProt accessions (4): P02675, D6REL8, F8W6P4, V9HVY1
UniProt curated annotations — full annotation on UniProt →
Function. Cleaved by the protease thrombin to yield monomers which, together with fibrinogen alpha (FGA) and fibrinogen gamma (FGG), polymerize to form an insoluble fibrin matrix. Fibrin has a major function in hemostasis as one of the primary components of blood clots. In addition, functions during the early stages of wound repair to stabilize the lesion and guide cell migration during re-epithelialization. Was originally thought to be essential for platelet aggregation, based on in vitro studies using anticoagulated blood. However subsequent studies have shown that it is not absolutely required for thrombus formation in vivo. Enhances expression of SELP in activated platelets. Maternal fibrinogen is essential for successful pregnancy. Fibrin deposition is also associated with infection, where it protects against IFNG-mediated hemorrhage. May also facilitate the antibacterial immune response via both innate and T-cell mediated pathways.
Subunit / interactions. Heterohexamer; disulfide linked. Contains 2 sets of 3 non-identical chains (alpha, beta and gamma). The 2 heterotrimers are in head to head conformation with the N-termini in a small central domain.
Subcellular location. Secreted.
Tissue specificity. Detected in blood plasma (at protein level).
Post-translational modifications. Conversion of fibrinogen to fibrin is triggered by thrombin, which cleaves fibrinopeptides A and B from alpha and beta chains, and thus exposes the N-terminal polymerization sites responsible for the formation of the soft clot. The soft clot is converted into the hard clot by factor XIIIA which catalyzes the epsilon-(gamma-glutamyl)lysine cross-linking between gamma chains (stronger) and between alpha chains (weaker) of different monomers.
Disease relevance. Congenital afibrinogenemia (CAFBN) [MIM:202400] Rare autosomal recessive disorder is characterized by bleeding that varies from mild to severe and by complete absence or extremely low levels of plasma and platelet fibrinogen. The disease is caused by variants affecting the gene represented in this entry. Patients with congenital fibrinogen abnormalities can manifest different clinical pictures. Some cases are clinically silent, some show a tendency toward bleeding and some show a predisposition for thrombosis with or without bleeding. Dysfibrinogenemia, congenital (DYSFIBRIN) [MIM:616004] A disorder characterized by qualitative abnormalities (dysfibrinogenemia) of the circulating fibrinogen. Affected individuals are frequently asymptomatic, but some patients have bleeding diathesis, thromboembolic complications, or both. In some cases, dysfibrinogenemia is associated with low circulating fibrinogen levels (hypodysfibrinogenemia). The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. A long coiled coil structure formed by 3 polypeptide chains connects the central nodule to the C-terminal domains (distal nodules). The long C-terminal ends of the alpha chains fold back, contributing a fourth strand to the coiled coil structure.
RefSeq proteins (9): NP_001171670, NP_001369688, NP_001369689, NP_001369690, NP_001369691, NP_001369692, NP_001369693, NP_001369694, NP_005132* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom | Domain |
| IPR012290 | Fibrinogen_a/b/g_coil_dom | Domain |
| IPR014716 | Fibrinogen_a/b/g_C_1 | Homologous_superfamily |
| IPR020837 | Fibrinogen_CS | Conserved_site |
| IPR036056 | Fibrinogen-like_C | Homologous_superfamily |
| IPR037579 | FIB_ANG-like | Family |
Pfam: PF00147, PF08702
UniProt features (86 total): strand 26, sequence variant 17, helix 13, disulfide bond 8, site 4, sequence conflict 4, turn 4, region of interest 2, signal peptide 1, peptide 1, modified residue 1, glycosylation site 1, chain 1, domain 1, coiled-coil region 1, compositionally biased region 1
Structure
Experimental structures (PDB)
41 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6BIJ | X-RAY DIFFRACTION | 2.1 |
| 6V1A | X-RAY DIFFRACTION | 2.29 |
| 1FZC | X-RAY DIFFRACTION | 2.3 |
| 3E1I | X-RAY DIFFRACTION | 2.3 |
| 6V18 | X-RAY DIFFRACTION | 2.35 |
| 2OYH | X-RAY DIFFRACTION | 2.4 |
| 6BIL | X-RAY DIFFRACTION | 2.4 |
| 1RE3 | X-RAY DIFFRACTION | 2.45 |
| 1FZG | X-RAY DIFFRACTION | 2.5 |
| 1RF1 | X-RAY DIFFRACTION | 2.53 |
| 2HLO | X-RAY DIFFRACTION | 2.6 |
| 3BVH | X-RAY DIFFRACTION | 2.6 |
| 6V19 | X-RAY DIFFRACTION | 2.6 |
| 1FZF | X-RAY DIFFRACTION | 2.7 |
| 1RE4 | X-RAY DIFFRACTION | 2.7 |
| 2H43 | X-RAY DIFFRACTION | 2.7 |
| 2OYI | X-RAY DIFFRACTION | 2.7 |
| 2Z4E | X-RAY DIFFRACTION | 2.7 |
| 6ATZ | X-RAY DIFFRACTION | 2.7 |
| 6V0Y | X-RAY DIFFRACTION | 2.7 |
| 6V13 | X-RAY DIFFRACTION | 2.75 |
| 1LT9 | X-RAY DIFFRACTION | 2.8 |
| 1LTJ | X-RAY DIFFRACTION | 2.8 |
| 2Q9I | X-RAY DIFFRACTION | 2.8 |
| 6V15 | X-RAY DIFFRACTION | 2.8 |
| 1RF0 | X-RAY DIFFRACTION | 2.81 |
| 2FFD | X-RAY DIFFRACTION | 2.89 |
| 1FZA | X-RAY DIFFRACTION | 2.9 |
| 1FZB | X-RAY DIFFRACTION | 2.9 |
| 1N73 | X-RAY DIFFRACTION | 2.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P02675-F1 | 84.43 | 0.68 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (4): 160–161 (cleavage; by hementin; to prevent blood coagulation); 163–164 (cleavage; by plasmin; to break down fibrin clots); 44–45 (cleavage; by thrombin; to release fibrinopeptide b); 152–153 (cleavage; by plasmin; to break down fibrin clots)
Post-translational modifications (1): 31
Disulfide bonds (8): 95, 106, 110, 223, 227, 231–316, 241–270, 424–437
Glycosylation sites (1): 394
Function
Pathways and Gene Ontology
Reactome pathways
20 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-1236974 | ER-Phagosome pathway |
| R-HSA-166058 | MyD88:MAL(TIRAP) cascade initiated on plasma membrane |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-354192 | Integrin signaling |
| R-HSA-354194 | GRB2:SOS provides linkage to MAPK signaling for Integrins |
| R-HSA-372708 | p130Cas linkage to MAPK signaling for integrins |
| R-HSA-5602498 | MyD88 deficiency (TLR2/4) |
| R-HSA-5603041 | IRAK4 deficiency (TLR2/4) |
| R-HSA-5674135 | MAP2K and MAPK activation |
| R-HSA-5686938 | Regulation of TLR by endogenous ligand |
| R-HSA-6802946 | Signaling by moderate kinase activity BRAF mutants |
| R-HSA-6802948 | Signaling by high-kinase activity BRAF mutants |
| R-HSA-6802952 | Signaling by BRAF and RAF1 fusions |
| R-HSA-6802955 | Paradoxical activation of RAF signaling by kinase inactive BRAF |
| R-HSA-9649948 | Signaling downstream of RAS mutants |
| R-HSA-9656223 | Signaling by RAF1 mutants |
| R-HSA-9769733 | Fibrin formation |
| R-HSA-9936686 | Aggregated β-amyloid interacts with fibrinogen |
| R-HSA-140875 |
MSigDB gene sets: 0 (showing top):
GO Biological Process (26): adaptive immune response (GO:0002250), cell-matrix adhesion (GO:0007160), plasminogen activation (GO:0031639), positive regulation of heterotypic cell-cell adhesion (GO:0034116), fibrinolysis (GO:0042730), induction of bacterial agglutination (GO:0043152), cellular response to leptin stimulus (GO:0044320), innate immune response (GO:0045087), positive regulation of vasoconstriction (GO:0045907), positive regulation of exocytosis (GO:0045921), positive regulation of protein secretion (GO:0050714), protein polymerization (GO:0051258), response to calcium ion (GO:0051592), protein-containing complex assembly (GO:0065003), positive regulation of ERK1 and ERK2 cascade (GO:0070374), platelet aggregation (GO:0070527), cellular response to interleukin-1 (GO:0071347), blood coagulation, fibrin clot formation (GO:0072378), positive regulation of peptide hormone secretion (GO:0090277), positive regulation of substrate adhesion-dependent cell spreading (GO:1900026), negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (GO:1902042), negative regulation of endothelial cell apoptotic process (GO:2000352), immune system process (GO:0002376), blood coagulation (GO:0007596), hemostasis (GO:0007599), platelet activation (GO:0030168)
GO Molecular Function (6): signaling receptor binding (GO:0005102), structural molecule activity (GO:0005198), extracellular matrix structural constituent (GO:0005201), protein-folding chaperone binding (GO:0051087), protein binding (GO:0005515), cell adhesion molecule binding (GO:0050839)
GO Cellular Component (15): extracellular region (GO:0005576), fibrinogen complex (GO:0005577), obsolete extracellular space (GO:0005615), endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), cell cortex (GO:0005938), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), extracellular matrix (GO:0031012), platelet alpha granule (GO:0031091), platelet alpha granule lumen (GO:0031093), synapse (GO:0045202), extracellular exosome (GO:0070062), blood microparticle (GO:0072562), extracellular vesicle (GO:1903561)
Reactome top-level categories
Rollup of top-16 pathways:
| Category | Pathways |
|---|---|
| Oncogenic MAPK signaling | 5 |
| Integrin signaling | 2 |
| Diseases associated with the TLR signaling cascade | 2 |
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Antigen processing-Cross presentation | 1 |
| Toll Like Receptor 4 (TLR4) Cascade | 1 |
| Toll Like Receptor TLR1:TLR2 Cascade | 1 |
| Toll Like Receptor TLR6:TLR2 Cascade | 1 |
| Extracellular matrix organization | 1 |
| Signal Transduction | 1 |
| Platelet Aggregation (Plug Formation) | 1 |
| RAF/MAP kinase cascade | 1 |
| Toll-like Receptor Cascades | 1 |
| Signaling by RAS mutants | 1 |
| Coagulation pathway | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 3 |
| cellular anatomical structure | 3 |
| immune response | 2 |
| positive regulation of secretion by cell | 2 |
| cytoplasm | 2 |
| cell periphery | 2 |
| extracellular region | 2 |
| cell-substrate adhesion | 1 |
| zymogen activation | 1 |
| positive regulation of cell-cell adhesion | 1 |
| heterotypic cell-cell adhesion | 1 |
| regulation of heterotypic cell-cell adhesion | 1 |
| negative regulation of blood coagulation | 1 |
| antibacterial humoral response | 1 |
| cellular response to hormone stimulus | 1 |
| response to leptin | 1 |
| defense response to symbiont | 1 |
| regulation of vasoconstriction | 1 |
| vasoconstriction | 1 |
| positive regulation of multicellular organismal process | 1 |
| exocytosis | 1 |
| regulation of exocytosis | 1 |
| protein secretion | 1 |
| regulation of protein secretion | 1 |
| positive regulation of protein transport | 1 |
| protein-containing complex assembly | 1 |
| response to metal ion | 1 |
| cellular component assembly | 1 |
| protein-containing complex organization | 1 |
| positive regulation of MAPK cascade | 1 |
| ERK1 and ERK2 cascade | 1 |
| regulation of ERK1 and ERK2 cascade | 1 |
| platelet activation | 1 |
| homotypic cell-cell adhesion | 1 |
| response to interleukin-1 | 1 |
| cellular response to cytokine stimulus | 1 |
| blood coagulation | 1 |
| protein activation cascade | 1 |
| positive regulation of peptide secretion | 1 |
| peptide hormone secretion | 1 |
Protein interactions and networks
STRING
2108 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FGB | FGA | P02671 | 957 |
| FGB | FGG | P02679 | 937 |
| FGB | F2 | P00734 | 837 |
| FGB | SERPIND1 | P05546 | 836 |
| FGB | A2M | P01023 | 820 |
| FGB | HABP2 | Q14520 | 805 |
| FGB | VWF | P04275 | 804 |
| FGB | KNG1 | P01042 | 796 |
| FGB | HRG | P04196 | 779 |
| FGB | SERPINE1 | P05121 | 722 |
| FGB | F13A1 | P00488 | 701 |
| FGB | FN1 | P02751 | 701 |
| FGB | PLG | P00747 | 694 |
| FGB | AGT | P01019 | 673 |
| FGB | APOA2 | P02652 | 664 |
IntAct
106 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FGA | FGB | psi-mi:“MI:0915”(physical association) | 0.850 |
| FGA | FGB | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| MAPK6 | HERC2 | psi-mi:“MI:0914”(association) | 0.840 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| FGB | psi-mi:“MI:0915”(physical association) | 0.540 | |
| FGB | psi-mi:“MI:0403”(colocalization) | 0.540 | |
| FGB | psi-mi:“MI:0915”(physical association) | 0.540 | |
| YWHAQ | IGLC7 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM237 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| SSBP2 | CLEC18A | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| FGB | APP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FGB | KLK6 | psi-mi:“MI:0570”(protein cleavage) | 0.440 |
| FGB | RSL1D1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MIS12 | C1 segment | psi-mi:“MI:0915”(physical association) | 0.400 |
| CD5L | psi-mi:“MI:0915”(physical association) | 0.400 | |
| LECT2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| TXN2 | FGB | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (289): FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), SBDS (Affinity Capture-MS), FGB (Affinity Capture-MS), FGB (Affinity Capture-MS), SPR (Affinity Capture-MS), FGB (Affinity Capture-MS), ADK (Affinity Capture-MS), NARS (Affinity Capture-MS), OXSR1 (Affinity Capture-MS), FGB (Affinity Capture-MS)
ESM2 similar proteins: A0A1L4BJ46, A0A5C1ZXT8, A0A5C2A2T2, A8WP66, F4JP36, H2KZU7, I7GQA7, O45879, O55159, O62301, O76411, P00630, P02675, P0C8L9, P0DKU2, P0DMI6, P0DPT7, P0DPT9, P0DPZ3, P0DPZ9, P0DXZ6, P0DY42, P14480, P16422, P42579, P58239, P59888, Q09553, Q10128, Q1WER1, Q3T0L5, Q5F381, Q6P9Z6, Q6PXP0, Q6T178, Q75QW1, Q8BGV3, Q8BJ83, Q8K0E8, Q8VCM7
Diamond homologs: A0A8J8, A2AV25, D8VNS7, D8VNS8, D8VNS9, D8VNT0, E2IYB3, E9PV24, O00602, O08538, O15123, O18920, O35460, O35462, O35608, O43827, O70165, O70497, O75636, O77802, O93526, O95841, P02671, P02675, P02676, P02678, P02679, P02680, P04115, P06399, P10039, P12799, P12804, P14448, P14480, P17634, P19477, P21520, P22105, P24821
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “AIIB/b3 integrin” | “up-regulates activity” | FGB | binding |
| FGB | up-regulates | Platelet_aggregation | |
| FGB | “form complex” | Fibrinogen | binding |
| MMP13 | “down-regulates quantity by destabilization” | FGB | cleavage |
Disease & clinical
Clinical variants and AI predictions
ClinVar
270 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 11 |
| Likely pathogenic | 6 |
| Uncertain significance | 157 |
| Likely benign | 33 |
| Benign | 38 |
Top pathogenic / likely-pathogenic (17)
| Variant ID | HGVS | Classification |
|---|---|---|
| 16389 | NM_005141.5(FGB):c.1148T>G (p.Leu383Arg) | Pathogenic |
| 16390 | NM_005141.5(FGB):c.1289G>A (p.Gly430Asp) | Pathogenic |
| 16392 | NM_005141.5(FGB):c.958+13C>T | Pathogenic |
| 16393 | NM_005141.5(FGB):c.1244+1G>T | Pathogenic |
| 16395 | NM_005141.5(FGB):c.605T>A (p.Leu202Gln) | Pathogenic |
| 2683306 | NM_005141.5(FGB):c.134del (p.Gly45fs) | Pathogenic |
| 2691428 | NC_000004.11:g.(?155484162)(155493960_?)del | Pathogenic |
| 3725102 | NM_005141.5(FGB):c.772C>T (p.Gln258Ter) | Pathogenic |
| 4847493 | NM_005141.5(FGB):c.1372A>T (p.Lys458Ter) | Pathogenic |
| 800647 | NM_005141.5(FGB):c.974G>C (p.Gly325Ala) | Pathogenic |
| 800648 | NM_005141.5(FGB):c.679T>C (p.Cys227Arg) | Pathogenic |
| 2498020 | NM_005141.5(FGB):c.1133C>T (p.Thr378Ile) | Likely pathogenic |
| 2691591 | NM_005141.5(FGB):c.498_512del (p.Asn167_Glu171del) | Likely pathogenic |
| 3029676 | NM_005141.5(FGB):c.188del (p.Pro63fs) | Likely pathogenic |
| 3380985 | NM_005141.5(FGB):c.1268_1269del (p.Gln423fs) | Likely pathogenic |
| 4541008 | NM_005141.5(FGB):c.936del (p.Lys313fs) | Likely pathogenic |
| 981156 | NM_005141.5(FGB):c.490+1G>C | Likely pathogenic |
SpliceAI
788 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:154565296:TCA:T | donor_gain | 1.0000 |
| 4:154565797:A:AG | acceptor_gain | 1.0000 |
| 4:154565806:A:AG | acceptor_gain | 1.0000 |
| 4:154565806:A:T | acceptor_loss | 1.0000 |
| 4:154565806:AG:A | acceptor_gain | 1.0000 |
| 4:154565806:AGG:A | acceptor_gain | 1.0000 |
| 4:154565807:G:GT | acceptor_gain | 1.0000 |
| 4:154565807:GG:G | acceptor_gain | 1.0000 |
| 4:154565807:GGG:G | acceptor_gain | 1.0000 |
| 4:154565807:GGGT:G | acceptor_gain | 1.0000 |
| 4:154565807:GGGTT:G | acceptor_gain | 1.0000 |
| 4:154565943:A:T | donor_gain | 1.0000 |
| 4:154565998:TGGTG:T | donor_loss | 1.0000 |
| 4:154565999:GGTG:G | donor_loss | 1.0000 |
| 4:154566000:G:GG | donor_gain | 1.0000 |
| 4:154566000:GT:G | donor_loss | 1.0000 |
| 4:154566001:T:G | donor_loss | 1.0000 |
| 4:154566486:TA:T | acceptor_loss | 1.0000 |
| 4:154566487:A:AC | acceptor_loss | 1.0000 |
| 4:154566487:AG:A | acceptor_gain | 1.0000 |
| 4:154566487:AGG:A | acceptor_gain | 1.0000 |
| 4:154566487:AGGG:A | acceptor_gain | 1.0000 |
| 4:154566487:AGGGG:A | acceptor_gain | 1.0000 |
| 4:154566488:G:GT | acceptor_loss | 1.0000 |
| 4:154566488:GG:G | acceptor_gain | 1.0000 |
| 4:154566488:GGG:G | acceptor_gain | 1.0000 |
| 4:154566488:GGGG:G | acceptor_gain | 1.0000 |
| 4:154566488:GGGGG:G | acceptor_gain | 1.0000 |
| 4:154566541:A:T | donor_gain | 1.0000 |
| 4:154566668:AAAAG:A | donor_loss | 1.0000 |
AlphaMissense
3269 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:154569202:C:A | R285S | 0.999 |
| 4:154569203:G:C | R285P | 0.999 |
| 4:154569237:G:C | W296C | 0.999 |
| 4:154569237:G:T | W296C | 0.999 |
| 4:154569771:A:C | S406R | 0.999 |
| 4:154569773:C:A | S406R | 0.999 |
| 4:154569773:C:G | S406R | 0.999 |
| 4:154570444:T:A | C424S | 0.999 |
| 4:154570445:G:C | C424S | 0.999 |
| 4:154570446:T:G | C424W | 0.999 |
| 4:154570468:T:A | W432R | 0.999 |
| 4:154570468:T:C | W432R | 0.999 |
| 4:154570471:T:A | W433R | 0.999 |
| 4:154570471:T:C | W433R | 0.999 |
| 4:154570483:T:C | C437R | 0.999 |
| 4:154570573:T:A | W467R | 0.999 |
| 4:154570573:T:C | W467R | 0.999 |
| 4:154566510:T:A | C110S | 0.998 |
| 4:154566511:G:C | C110S | 0.998 |
| 4:154568470:T:A | C270S | 0.998 |
| 4:154568471:G:A | C270Y | 0.998 |
| 4:154568471:G:C | C270S | 0.998 |
| 4:154568472:T:G | C270W | 0.998 |
| 4:154569184:T:A | W279R | 0.998 |
| 4:154569184:T:C | W279R | 0.998 |
| 4:154569223:T:C | F292L | 0.998 |
| 4:154569225:T:A | F292L | 0.998 |
| 4:154569225:T:G | F292L | 0.998 |
| 4:154569235:T:A | W296R | 0.998 |
| 4:154569235:T:C | W296R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000193189 (4:154572280 C>A,G,T), RS1000390246 (4:154565481 A>G), RS1000593377 (4:154571514 C>A), RS1000756385 (4:154565710 C>A,T), RS1000772573 (4:154564482 T>A,C), RS1001143183 (4:154571309 T>A), RS1001297432 (4:154571653 TCTTGTCCTCAATTAGG>T), RS1001322407 (4:154572703 A>T), RS1001374187 (4:154572995 C>T), RS1001922984 (4:154566095 C>A), RS1001938593 (4:154565005 AAATTCG>A), RS1002143953 (4:154561378 T>C), RS1002398971 (4:154567909 A>G), RS1002556083 (4:154571924 C>A,T), RS1002845632 (4:154566140 C>T)
Disease associations
OMIM: gene MIM:134830 | disease phenotypes: MIM:202400, MIM:616004
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| thrombophilia | Strong | Autosomal dominant |
| congenital afibrinogenemia | Strong | Autosomal recessive |
| congenital fibrinogen deficiency | Strong | Semidominant |
| familial hypofibrinogenemia | Supportive | Autosomal dominant |
| familial dysfibrinogenemia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital fibrinogen deficiency | Definitive | SD |
Mondo (7): congenital afibrinogenemia (MONDO:0008737), familial dysfibrinogenemia (MONDO:0014452), congenital fibrinogen deficiency (MONDO:0018060), cerebral cavernous malformation (MONDO:0000820), thrombocytopenia (MONDO:0002049), thrombophilia (MONDO:0002305), familial hypofibrinogenemia (MONDO:0015096)
Orphanet (6): Congenital fibrinogen deficiency (Orphanet:335), Familial afibrinogenemia (Orphanet:98880), Familial dysfibrinogenemia (Orphanet:98881), Immunodeficiency with factor I anomaly (Orphanet:200418), Familial cerebral cavernous malformation (Orphanet:221061), NON RARE IN EUROPE: Cerebral cavernous malformations (Orphanet:164)
HPO phenotypes
29 total (29 of 29 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000225 | Gingival bleeding |
| HP:0000421 | Epistaxis |
| HP:0000978 | Bruising susceptibility |
| HP:0001342 | Cerebral hemorrhage |
| HP:0001386 | Joint swelling |
| HP:0001522 | Death in infancy |
| HP:0001892 | Abnormal bleeding |
| HP:0001934 | Persistent bleeding after trauma |
| HP:0002239 | Gastrointestinal hemorrhage |
| HP:0002248 | Hematemesis |
| HP:0003577 | Congenital onset |
| HP:0003593 | Infantile onset |
| HP:0003811 | Neonatal death |
| HP:0003819 | Death in childhood |
| HP:0004936 | Venous thrombosis |
| HP:0005268 | Miscarriage |
| HP:0006298 | Prolonged bleeding after dental extraction |
| HP:0011421 | Death in adolescence |
| HP:0011463 | Childhood onset |
| HP:0011884 | Abnormal umbilical stump bleeding |
| HP:0011900 | Hypofibrinogenemia |
| HP:0012223 | Splenic rupture |
| HP:0030137 | Prolonged bleeding following circumcision |
| HP:0034287 | Afibrinogenemia |
| HP:0100309 | Subdural hemorrhage |
| HP:0100310 | Epidural hemorrhage |
| HP:0400008 | Menometrorrhagia |
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000366_1 | Fibrinogen | 2.000000e-30 |
| GCST000368_6 | Fibrinogen | 8.000000e-39 |
| GCST001158_3 | Fibrinogen | 1.000000e-39 |
| GCST001737_13 | Chronic obstructive pulmonary disease-related biomarkers | 6.000000e-06 |
| GCST002147_8 | Fibrinogen | 2.000000e-127 |
| GCST003194_36 | Fibrinogen levels | 6.000000e-12 |
| GCST003194_37 | Fibrinogen levels | 2.000000e-53 |
| GCST003194_4 | Fibrinogen levels | 1.000000e-180 |
| GCST004121_27 | Fibrinogen levels | 1.000000e-142 |
| GCST004122_2 | Fibrinogen levels | 5.000000e-134 |
| GCST006015_1 | Fibrinogen levels | 1.000000e-11 |
| GCST012139_3 | D-dimer levels in HIV infection | 6.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004507 | D dimer measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000347 | Afibrinogenemia | C15.378.100.100.056; C15.378.100.141.072; C15.378.463.067; C16.320.099.056 |
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
| D019851 | Thrombophilia | C15.378.925 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2048 (SINGLE PROTEIN), CHEMBL2364709 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 8,822 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL417799 | SANGUINARIUM | 2 | 8,822 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
25 measured of 29 human assays (37 total across all organisms); most potent 25 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| 4-nitroindane-1,3-dione | IC50 | 3520 nM |
| 2-[2-[2-[[3-[(4-chlorophenyl)methoxy]-4-methoxy-phenyl]methylidene]hydrazinyl]-4-oxidanylidene-1,3-thiazol-5-yl]ethanoic acid | IC50 | 4960 nM |
| cid_8321 | IC50 | 4980 nM |
| SMR000162332 | IC50 | 6710 nM |
| 2-(5-spiro[3H-benzimidazole-2,1’-cyclohexane]ylidene)propanedinitrile | IC50 | 7290 nM |
| 7-[4-(2,3-dimethylphenyl)piperazin-1-yl]sulfonyl-4,6-dimethyl-2,3-dihydro-1,4-benzoxazine | IC50 | 10100 nM |
| MLS000551839 | IC50 | 10200 nM |
| cid_3251511 | IC50 | 10600 nM |
| MLS001164928 | IC50 | 11700 nM |
| cid_24210575 | IC50 | 15600 nM |
| 24-methyl-5,7,18,20-tetraoxa-24-azahexacyclo[11.11.0.0^{2,10}.0^{4,8}.0^{14,22}.0^{17,21}]tetracosa-1(13),2,4(8),9,11,14(22),15,17(21),23-nonaen-24-ium | IC50 | 19000 nM |
| cid_5046151 | IC50 | 21000 nM |
| SMR001874777 | IC50 | 22300 nM |
| MLS000045751 | IC50 | 26100 nM |
| 4-(prop-2-ynylamino)benzoic acid ethyl ester | IC50 | 27700 nM |
| MLS000063762 | IC50 | 27800 nM |
| MLS001018504 | IC50 | 46100 nM |
| cid_288099 | IC50 | 83200 nM |
| SMR001565456 | IC50 | 83300 nM |
| methyl (5E)-5-[1-[(4-aminophenyl)amino]butylidene]-2,2-dimethyl-4,6-bis(oxidanylidene)cyclohexane-1-carboxylate | IC50 | 83300 nM |
| 2-(1-naphthalenyl)-4-quinolinecarboxylic acid [2-[(1,1-dioxo-3-thiolanyl)amino]-2-oxoethyl] ester | IC50 | 83300 nM |
| cid_2336107 | IC50 | 83300 nM |
| MLS000876743 | IC50 | 83300 nM |
| N-[(E)-(1-prop-2-ynyl-3-indolyl)methylideneamino]-2-benzofurancarboxamide | IC50 | 83300 nM |
| SMR000169411 | IC50 | 83300 nM |
ChEMBL bioactivities
8 potent at pChembl≥5 of 25 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.30 | IC50 | 4979 | nM | CHEMBL600008 |
| 5.30 | IC50 | 4965 | nM | CHEMBL1334670 |
| 5.07 | IC50 | 8514 | nM | CHEMBL1451725 |
| 5.05 | IC50 | 8920 | nM | CHEMBL1384064 |
| 5.04 | IC50 | 9103 | nM | CHEMBL1708493 |
| 5.03 | IC50 | 9237 | nM | CHEMBL1882477 |
| 5.03 | IC50 | 9328 | nM | HAEMATOXYLIN |
| 5.00 | IC50 | 1.012e+04 | nM | CHEMBL1404361 |
CTD chemical–gene interactions
73 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, increases methylation, decreases expression | 5 |
| Ethinyl Estradiol | affects binding, affects cotreatment, increases expression | 5 |
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases expression | 5 |
| ethinyl estradiol-desogestrel combination | affects binding, increases expression | 4 |
| Air Pollutants | decreases expression, increases abundance, increases expression, affects reaction | 4 |
| Cyclosporine | decreases expression | 4 |
| Gestodene | increases expression, affects binding, affects cotreatment | 3 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 3 |
| methylmercuric chloride | decreases expression | 2 |
| bisphenol A | affects expression, increases expression, decreases reaction, increases abundance | 2 |
| perfluorooctanoic acid | decreases expression, increases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Snake Venoms | affects binding, increases cleavage | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Levonorgestrel | affects binding, affects cotreatment, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| abemaciclib | decreases expression | 1 |
| ginger extract | increases expression, decreases reaction, increases abundance | 1 |
| perfluorodecanesulfonic acid | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| ascorbate-2-phosphate | affects binding, affects cotreatment, increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| norgestimate | affects binding, affects cotreatment, increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3214988 | Binding | PubChem BioAssay. Fluorescence polarization-based biochemical high throughput dose response assay to identify inhibitors that disrupt the binding of a cyclic peptide (Tn6) to the fibrin proteolytic product D-Dimer and fragment E complex [DD | PubChem BioAssay data set |
Clinical trials (associated diseases)
295 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01214772 | PHASE4 | COMPLETED | The Effect of Heparin in Treatment IVF-ET Failure |
| NCT03531437 | PHASE4 | TERMINATED | Comparison of Coagulation Profiles Between Zoely and Minidoz: RCT |
| NCT02822599 | PHASE4 | COMPLETED | Human Fibrinogen Concentrate in Pediatric Cardiac Surgery |
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
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Related Atlas pages
- Associated diseases: thrombophilia, congenital afibrinogenemia, familial hypofibrinogenemia, familial dysfibrinogenemia, congenital fibrinogen deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cerebral cavernous malformation, congenital afibrinogenemia, congenital fibrinogen deficiency, familial dysfibrinogenemia, familial hypofibrinogenemia, thrombocytopenia, thrombophilia