FHIT

gene
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Also known as FRA3BAP3Aase

Summary

FHIT (fragile histidine triad diadenosine triphosphatase, HGNC:3701) is a protein-coding gene on chromosome 3p14.2, encoding Bis(5’-adenosyl)-triphosphatase (P49789). Possesses dinucleoside triphosphate hydrolase activity.

The protein encoded by this gene is a P1-P3-bis(5’-adenosyl) triphosphate hydrolase involved in purine metabolism. This gene encompasses the common fragile site FRA3B on chromosome 3, where carcinogen-induced damage can lead to translocations and aberrant transcripts. In fact, aberrant transcripts from this gene have been found in about half of all esophageal, stomach, and colon carcinomas. The encoded protein is also a tumor suppressor, as loss of its activity results in replication stress and DNA damage.

Source: NCBI Gene 2272 — RefSeq curated summary.

At a glance

  • GWAS associations: 85
  • Clinical variants (ClinVar): 86 total — 1 pathogenic, 5 likely-pathogenic
  • Phenotypes (HPO): 2
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • Cancer driver (intOGen): activating (oncogene-like) across 1 cancer types
  • Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
  • MANE Select transcript: NM_002012

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3701
Approved symbolFHIT
Namefragile histidine triad diadenosine triphosphatase
Location3p14.2
Locus typegene with protein product
StatusApproved
AliasesFRA3B, AP3Aase
Ensembl geneENSG00000189283
Ensembl biotypeprotein_coding
OMIM601153
Entrez2272

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 4 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron

ENST00000465330, ENST00000466788, ENST00000468189, ENST00000476844, ENST00000488467, ENST00000490952, ENST00000492590

RefSeq mRNA: 6 — MANE Select: NM_002012 NM_001166243, NM_001320899, NM_001320900, NM_001354589, NM_001354590, NM_002012

CCDS: CCDS2894

Canonical transcript exons

ENST00000492590 — 10 exons

ExonStartEnd
ENSE000013661366001400760014152
ENSE000018203716120061761200665
ENSE000018343276125130161251452
ENSE000018528516104204761042099
ENSE000018612365975222159752321
ENSE000018652086082191960822011
ENSE000019362976053686060536979
ENSE000019552405974727759749579
ENSE000036640166001137160011400
ENSE000036679445992234659922414

Expression profiles

Bgee: expression breadth ubiquitous, 188 present calls, max score 89.51.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.8524 / max 543.9886, expressed in 1500 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
427877.89831496
427781.272686
427790.573973
427800.107747

Top tissues by expression

279 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right adrenal glandUBERON:000123389.51gold quality
right adrenal gland cortexUBERON:003582789.39gold quality
left adrenal gland cortexUBERON:003582588.76gold quality
left adrenal glandUBERON:000123488.68gold quality
apex of heartUBERON:000209888.09gold quality
C1 segment of cervical spinal cordUBERON:000646986.60gold quality
adrenal glandUBERON:000236986.28gold quality
adrenal cortexUBERON:000123585.81gold quality
gall bladderUBERON:000211085.06gold quality
oocyteCL:000002384.74gold quality
adrenal tissueUBERON:001830384.63gold quality
right atrium auricular regionUBERON:000663183.82gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047383.38gold quality
adult mammalian kidneyUBERON:000008283.34gold quality
heart left ventricleUBERON:000208483.02gold quality
mucosa of stomachUBERON:000119982.97gold quality
body of pancreasUBERON:000115082.81gold quality
cardiac ventricleUBERON:000208282.34gold quality
spinal cordUBERON:000224082.27gold quality
cingulate cortexUBERON:000302782.00gold quality
left lobe of thyroid glandUBERON:000112081.87gold quality
anterior cingulate cortexUBERON:000983581.85gold quality
hindlimb stylopod muscleUBERON:000425281.45gold quality
caudate nucleusUBERON:000187381.41gold quality
right frontal lobeUBERON:000281081.39gold quality
pancreatic ductal cellCL:000207981.33silver quality
metanephros cortexUBERON:001053381.12gold quality
cardiac atriumUBERON:000208181.00gold quality
right lobe of thyroid glandUBERON:000111980.72gold quality
thyroid glandUBERON:000204680.66gold quality

Single-cell (SCXA)

Detected in 6 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-CURD-112yes44.25
E-HCAD-6yes41.54
E-GEOD-135922yes18.52
E-MTAB-9067yes15.72
E-HCAD-35yes11.36
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

3 targets.

TargetRegulation
AXIN2Repression
BIRC5Repression
MMP14Repression

Upstream regulators (CollecTRI, top): DNMT1, E2F1, FOS, KLF6, MYC, TFAP2A, TP53

miRNA regulators (miRDB)

82 targeting FHIT, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-340-5P100.0072.504437
HSA-MIR-6748-5P100.0065.811057
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-318599.9968.121959
HSA-MIR-211099.9666.681930
HSA-MIR-519E-5P99.9269.622358
HSA-MIR-515-5P99.9269.822343
HSA-MIR-6809-3P99.9171.453814
HSA-MIR-4753-3P99.9071.033786
HSA-MIR-605-3P99.8869.221833
HSA-MIR-6857-5P99.8765.32985
HSA-MIR-444799.8567.812900
HSA-MIR-3663-3P99.8470.39798
HSA-MIR-6756-5P99.8267.972466
HSA-MIR-1273H-5P99.7766.322471
HSA-MIR-3150A-3P99.7664.441640
HSA-MIR-6763-5P99.7664.681767
HSA-MIR-7856-5P99.7569.992901
HSA-MIR-674599.7465.331321
HSA-MIR-6766-5P99.6867.702325
HSA-MIR-561-3P99.6470.903647
HSA-MIR-613499.6365.681537
HSA-MIR-397599.6265.97697
HSA-MIR-451699.6167.783390
HSA-MIR-360999.5269.892587
HSA-MIR-143-3P99.4969.051457
HSA-MIR-477099.4969.091451
HSA-MIR-444199.4966.563216
HSA-MIR-142-5P99.4870.922416
HSA-MIR-5590-3P99.4870.912429

Functional genomics

ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • allelic loss of the FHIT gene may be involved in carcinogenesis in the peripheral lung of patients with IPF. (PMID:11731438)
  • reduced Fhit protein expression and loss of heterozygosity at FHIT gene in tumours from smoking and asbestos-exposed lung cancer patients (PMID:11788890)
  • Alterations of the fragile histidine triad gene, FHIT, and its encoded products contribute to testicular germ cell tumorigenesis. (PMID:11809703)
  • Restoration of fragile histidine triad (FHIT) expression induces apoptosis and suppresses tumorigenicity in lung and cervical cancer cell lines (PMID:11891319)
  • FHIT is missing in most human cancers, indicating it has a tumor suppressor function. Inactivation of only one allele compromises this function, indicating a “one-hit” mechanism of tumorigenesis is operative. (PMID:11902576)
  • Inactivation of the FHIT gene is an early event in carcinogenesis of the endometrium. (PMID:11915181)
  • Exposure to tobacco carcinogens increases the potential for chromosome breakage at fragile site FRA3B. (PMID:12007194)
  • The result of this study suggests that FHIT gene may be a tumor suppressor gene in human lung cancer cells. (PMID:12048684)
  • FHIT gene is one of the chromosome 3p putative tumor suppressor genes involved in the pathogenesis of this highly malignant neoplasm, gallbladder carcinoma (PMID:12057912)
  • Identification of unstable sequences within the common fragile site at 3p14.2: implications for the mechanism of deletions within fragile histidine triad gene/common fragile site at 3p14.2 in tumors. (PMID:12067991)
  • FHIT loss played a role in 23% ofexamined colorectal tumors, mostly poorly differentiated carcinomas. It positively correlated with the rate of distant metastases and bad prognosis. Excess FHIT was directly proportional to the apoptotic rate. (PMID:12090476)
  • MYCL1, FHIT, SPARC, p16(INK4) and TP53 genes associated to lung cancer in idiopathic pulmoary fibrosis (PMID:12169206)
  • reduced Fragile histidine triad expression was significantly associated with absence of mismatch repair protein expression in the advanced colorectal carcinomas ( (PMID:12177781)
  • Biallelic FHIT inactivation by LOH & hypermethylation leads to its complete inactivation in breast cancer. Silencing by promoter hypermethylation occurs in primary breast carcinomas, especially those with LOH. FHIT may cause sporadic breast tumorigenesis. (PMID:12231533)
  • The breakpoint t(3;20)(p14;p11) targets the potential tumor-suppressor gene FHIT in the FRA3B region and is accompanied by homozygous deletion of exon 5 of the gene and absence of functional FHIT and fusion transcripts. (PMID:12353263)
  • Abnormal FHIT gene transcript in breast cancer (PMID:12362975)
  • It is suggested that decreased FHIT expression plays an important role in the development and progression of the tumor, and thus may become a new prognostic marker in colorectal carcinoma. (PMID:12419158)
  • expression of Fhit is associated with invasion and metastasis of tumor in breast cancer (PMID:12452072)
  • evidence that instability extends further than previously reported and extends over 4 megabases (PMID:12483524)
  • Loss of Msh2 is not associated with FHIT deletion in breast carcinomas. (PMID:12529969)
  • FHIT tumor suppressor gene is down regulated in prostate carcinoma and may be a potential target for therapeutic intervention (PMID:12627509)
  • results indicated that the disruption of the mismatch repair system of Msh2 does not mainly lead to allelic loss of the FHIT/FRA3B locus as well as microsatellite instability in esophageal cancer (PMID:12697969)
  • High incidence of abnormal Fhit expression in younger patients and presence of human papillomavirus are key players in cervical carcinogenesis (PMID:12698186)
  • FHIT inactivation seems to be both an early and a later event, associated with carcinogenesis and progression to more aggressive hepatocellular carcinomas. (PMID:12800227)
  • Promoter hypermethylation of this gene is demonstrated in esophageal squamous cell carcinoma. (PMID:12839965)
  • exogenous expression of FHIT in Panc-1 cells affects genes regulating cell cycle arrest and apoptosis, and these molecular changes may contribute to the tumor suppressor activity of the FHIT gene (PMID:12890991)
  • Fhit protein is associated with highly aggressive phenotypes of cervical carcinoma. (PMID:12893195)
  • The loss of Fhit protein expression may be associated with aggressive phenotype of endometrial carcinomas. (PMID:12926121)
  • Fhit protein has a role in development of colorectal neoplasm (PMID:12964015)
  • Reduced fragile histidine triad gene expression might be involved in the development of gallbladder carcinoma and be correlated with Mlh1 expression (PMID:12969785)
  • FHIT is an independent prognostic factor that distinguishes a subgroup of patients with breast cancer who could benefit from adjuvant treatment. (PMID:14566838)
  • present data indicate a frequent decrease of Fhit protein expression, thus supporting the significance of FHIT inactivation in development of malignant mesothelioma (PMID:14569398)
  • Human and mouse orthologous genes, FHIT and Fhit, are more highly conserved through evolution than PTPRG/Ptprg and yet contain more sequence elements that are exquisitely sensitive to genomic rearrangements (PMID:14630947)
  • 5’-CpG island methylation plays an important role in inactivation of the FHIT gene in cervical cancer (PMID:14660280)
  • Abnormal FHIT mRNA expression is noted frequently in NHL cell lines and a certain proportion of NHL patients, and decreased FHIT protein expression indicates a significantly worse prognosis in diffuse large B-cell lymphoma. (PMID:14719066)
  • p16INK4a and Fhit expression is altered in carcinogenesis and progression of human oral cancer (PMID:14719099)
  • reduced Fhit expression occurs in the early stage of gastric carcinogenesis and could be correlated with a lack of Mlh1 expression and gastric phenotype (PMID:14760383)
  • The study suggests that mitochondria are involved in the apoptotic activity of FHIT. (PMID:14991669)
  • Hypermethylation of the 5’ CpG island of the FHIT gene is associated with hyperdiploid and translocation-negative subtypes of pediatric leukemia (PMID:15026336)
  • The data suggest that E2F-1 overexpression plays a role in suppression of tumor, at least in part trough transcriptional regulation of FHIT and relevant activation of WWOX. (PMID:15044096)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriofhitENSDARG00000078195
mus_musculusFhitENSMUSG00000060579
rattus_norvegicusFhitENSRNOG00000064939

Paralogs (2): HINT2 (ENSG00000137133), HINT1 (ENSG00000169567)

Protein

Protein identifiers

Bis(5’-adenosyl)-triphosphataseP49789 (reviewed: P49789)

Alternative names: AP3A hydrolase, Adenosine 5’-monophosphoramidase FHIT, Adenylylsulfatase, Adenylylsulfate-ammonia adenylyltransferase, Diadenosine 5’,5’’’-P1,P3-triphosphate hydrolase, Dinucleosidetriphosphatase, Fragile histidine triad protein

All UniProt accessions (2): E9PBZ0, P49789

UniProt curated annotations — full annotation on UniProt →

Function. Possesses dinucleoside triphosphate hydrolase activity. Cleaves P(1)-P(3)-bis(5’-adenosyl) triphosphate (Ap3A) to yield AMP and ADP. Can also hydrolyze P(1)-P(4)-bis(5’-adenosyl) tetraphosphate (Ap4A), but has extremely low activity with ATP. Exhibits adenylylsulfatase activity, hydrolyzing adenosine 5’-phosphosulfate to yield AMP and sulfate. Exhibits adenosine 5’-monophosphoramidase activity, hydrolyzing purine nucleotide phosphoramidates with a single phosphate group such as adenosine 5’monophosphoramidate (AMP-NH2) to yield AMP and NH2. Exhibits adenylylsulfate-ammonia adenylyltransferase, catalyzing the ammonolysis of adenosine 5’-phosphosulfate resulting in the formation of adenosine 5’-phosphoramidate. Also catalyzes the ammonolysis of adenosine 5-phosphorofluoridate and diadenosine triphosphate. Modulates transcriptional activation by CTNNB1 and thereby contributes to regulate the expression of genes essential for cell proliferation and survival, such as CCND1 and BIRC5. Plays a role in the induction of apoptosis via SRC and AKT1 signaling pathways. Inhibits MDM2-mediated proteasomal degradation of p53/TP53 and thereby plays a role in p53/TP53-mediated apoptosis. Induction of apoptosis depends on the ability of FHIT to bind P(1)-P(3)-bis(5’-adenosyl) triphosphate or related compounds, but does not require its catalytic activity, it may in part come from the mitochondrial form, which sensitizes the low-affinity Ca(2+) transporters, enhancing mitochondrial calcium uptake. Functions as a tumor suppressor.

Subunit / interactions. Homodimer. Interacts with UBE2I. Interacts with MDM2. Interacts with CTNNB1. Identified in a complex with CTNNB1 and LEF1.

Subcellular location. Cytoplasm. Mitochondrion. Nucleus.

Tissue specificity. Low levels expressed in all tissues tested. Phospho-FHIT observed in liver and kidney, but not in brain and lung. Phospho-FHIT undetected in all tested human tumor cell lines.

Post-translational modifications. Phosphorylation at Tyr-114 by SRC is required for induction of apoptosis.

Disease relevance. A chromosomal aberration involving FHIT has been found in a lymphoblastoid cell line established from a family with renal cell carcinoma and thyroid carcinoma. Translocation t(3;8)(p14.2;q24.1) with RNF139. Although the 3p14.2 breakpoint has been shown to interrupt FHIT in its 5-prime non-coding region, it is unlikely that FHIT is causally related to renal or other malignancies. Associated with digestive tract cancers. Numerous tumor types are found to have aberrant forms of FHIT protein due to deletions in a coding region of chromosome 3p14.2 including the fragile site locus FRA3B.

RefSeq proteins (6): NP_001159715, NP_001307828, NP_001307829, NP_001341518, NP_001341519, NP_002003* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR011146HIT-likeDomain
IPR019808Histidine_triad_CSConserved_site
IPR036265HIT-like_sfHomologous_superfamily
IPR039383FHITFamily
IPR052677Dinucleoside_ppp_hydrolaseFamily

Pfam: PF01230

Enzyme classification (BRENDA):

  • EC 3.6.1.29 — bis(5’-adenosyl)-triphosphatase (BRENDA: 9 organisms, 107 substrates, 29 inhibitors, 39 Km, 14 kcat entries)

Substrate kinetics (BRENDA)

15 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
P1-P3-BIS(5’-ADENOSYL) TRIPHOSPHATE0.001–0.01510
AP4A0.0006–0.4175
P1,P3-BIS(5’-ADENOSYL)TRIPHOSPHATE0.0007–0.00164
5’-O-[AMINO(HYDROXY)PHOSPHORYL]ADENOSINE0.003–0.0153
P1-P3-BIS(5’-GUANOSYL) TRIPHOSPHATE0.002–0.043
ADENOSINE-5’-PHOSPHO-N-METHYLIMIDAZOLIDE0.0053–0.182
ADENOSINE-5’-PHOSPHOIMIDAZOLIDE0.0062–0.0262
P1-5’-O-ADENOSINE-P3-5’-O-ADENOSINE TRIPHOSPHATE0.0029–0.0262
ADENOSINE 5’-PHOSPHORAMIDATE0.0031
AP5A0.0131
APCF2PPA0.2121
APCH2PPA0.1171
APCHFPPA0.091
P1-P3-BIS(5’-URACYL) TRIPHOSPHATE0.0251
UDP201

Catalyzed reactions (Rhea), 4 shown:

  • P(1),P(3)-bis(5’-adenosyl) triphosphate + H2O = AMP + ADP + 2 H(+) (RHEA:13893)
  • adenosine 5’-phosphosulfate + H2O = sulfate + AMP + 2 H(+) (RHEA:17041)
  • adenosine 5’-phosphosulfate + NH4(+) = adenosine 5’-phosphoramidate + sulfate + 2 H(+) (RHEA:19197)
  • adenosine 5’-phosphoramidate + H2O = NH4(+) + AMP (RHEA:67916)

UniProt features (40 total): mutagenesis site 12, strand 8, helix 6, binding site 5, modified residue 2, chain 1, domain 1, short sequence motif 1, sequence conflict 1, active site 1, turn 1, site 1

Structure

Experimental structures (PDB)

9 structures.

PDBMethodResolution (Å)
1FITX-RAY DIFFRACTION1.85
2FITX-RAY DIFFRACTION1.9
5FITX-RAY DIFFRACTION2.3
7P8PX-RAY DIFFRACTION2.34
3FITX-RAY DIFFRACTION2.4
4FITX-RAY DIFFRACTION2.5
2FHIX-RAY DIFFRACTION2.6
6FITX-RAY DIFFRACTION2.6
1FHIX-RAY DIFFRACTION3.1

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P49789-F195.150.90

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (2): 96 (tele-amp-histidine intermediate); 114 (important for induction of apoptosis)

Ligand- & substrate-binding residues (5): 8; 27; 83; 89–92; 98

Post-translational modifications (2): 114, 145

Mutagenesis-validated functional residues (12):

PositionPhenotype
10strongly reduces affinity for substrates and impairs apoptosis; when associated with w-25.
25reduces affinity for substrates and impairs apoptosis. strongly reduces affinity for substrates and impairs apoptosis; w
3550% decrease in catalytic activity. no loss in substrate binding.
9475% decrease in catalytic activity. no loss in substrate binding.
96loss of catalytic activity.
96total loss of catalytic activity. rescuable with free imidazole.
96total loss of catalytic activity. no loss in substrate binding.
9898% decrease in catalytic activity.
114impairs induction of apoptosis. strongly reduced affinity for substrates.
114impairs induction of apoptosis. reduces affinity for substrates.
114loss of phosphorylation by src. impairs induction of apoptosis.
145no effect on phosphorylation by src.

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 213 (showing top): GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GOBP_REGULATION_OF_PROTEASOMAL_UBIQUITIN_DEPENDENT_PROTEIN_CATABOLIC_PROCESS, GOLDRATH_IMMUNE_MEMORY, MODULE_45, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, TAKADA_GASTRIC_CANCER_COPY_NUMBER_DN, MODULE_16, GGAMTNNNNNTCCY_UNKNOWN, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, CEBPB_01, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, OHM_METHYLATED_IN_ADULT_CANCERS, GOBP_APOPTOTIC_SIGNALING_PATHWAY, LOPES_METHYLATED_IN_COLON_CANCER_DN

GO Biological Process (5): purine nucleotide metabolic process (GO:0006163), diadenosine triphosphate catabolic process (GO:0015964), negative regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032435), intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332), apoptotic process (GO:0006915)

GO Molecular Function (11): nucleotide binding (GO:0000166), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), adenosine 5’-monophosphoramidase activity (GO:0043530), adenylylsulfate-ammonia adenylyltransferase activity (GO:0047352), adenylylsulfatase activity (GO:0047627), bis(5’-adenosyl)-triphosphatase activity (GO:0047710), catalytic activity (GO:0003824), protein binding (GO:0005515), transferase activity (GO:0016740), hydrolase activity (GO:0016787)

GO Cellular Component (6): fibrillar center (GO:0001650), nucleus (GO:0005634), cytoplasm (GO:0005737), mitochondrion (GO:0005739), cytosol (GO:0005829), plasma membrane (GO:0005886)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
catalytic activity2
intracellular membrane-bounded organelle2
cytoplasm2
nucleotide metabolic process1
purine-containing compound metabolic process1
diadenosine polyphosphate catabolic process1
regulation of proteasomal ubiquitin-dependent protein catabolic process1
proteasome-mediated ubiquitin-dependent protein catabolic process1
negative regulation of proteasomal protein catabolic process1
negative regulation of ubiquitin-dependent protein catabolic process1
signal transduction by p53 class mediator1
intrinsic apoptotic signaling pathway1
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
nucleoside phosphate binding1
heterocyclic compound binding1
ubiquitin-like protein ligase binding1
protein binding1
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1
adenylyltransferase activity1
hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides1
pyrophosphatase activity1
molecular_function1
binding1
nucleolus1
intracellular anatomical structure1
membrane1
cell periphery1

Protein interactions and networks

STRING

1622 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
FHITWWOXQ9NZC7937
FHITFDXRP22570864
FHITNUDT2P50583813
FHITCTNNB1P35222736
FHITHINT1P49773734
FHITRASSF1Q9NS23720
FHITCDKN2AP42771700
FHITPTPRGP23470692
FHITRARBP10826664
FHITZFP37Q9Y6Q3661
FHITDAPK1P53355656
FHITAPTXQ7Z2E3652
FHITRNF139Q8WU17649
FHITF5H6H0F5H6H0646
FHITTP53P04637620

IntAct

35 interactions, top by confidence:

ABTypeScore
FHITFHITpsi-mi:“MI:0915”(physical association)0.950
FHITFHITpsi-mi:“MI:0407”(direct interaction)0.950
LEF1CTNNB1psi-mi:“MI:0914”(association)0.890
FHITCTNNB1psi-mi:“MI:0915”(physical association)0.600
FHITCTNNB1psi-mi:“MI:0407”(direct interaction)0.600
FHITDDIT4Lpsi-mi:“MI:0915”(physical association)0.560
GASTZZEF1psi-mi:“MI:0914”(association)0.530
LEF1FHITpsi-mi:“MI:0915”(physical association)0.500
FHITMTMR6psi-mi:“MI:0915”(physical association)0.400
FHITRELpsi-mi:“MI:0915”(physical association)0.370
FHITTRIM23psi-mi:“MI:0915”(physical association)0.370
FHITRAB40Bpsi-mi:“MI:0915”(physical association)0.370
RABL2AFHITpsi-mi:“MI:0914”(association)0.350
ARHGAP19FHITpsi-mi:“MI:0914”(association)0.350
CBY2FHITpsi-mi:“MI:0914”(association)0.350
FDCSPFHITpsi-mi:“MI:0914”(association)0.350
GGHMANBApsi-mi:“MI:0914”(association)0.350

BioGRID (33): FHIT (Two-hybrid), FHIT (Two-hybrid), FHIT (Synthetic Growth Defect), FHIT (Affinity Capture-MS), MTMR6 (Affinity Capture-MS), FHIT (Affinity Capture-MS), FHIT (Synthetic Lethality), FHIT (Two-hybrid), FHIT (Two-hybrid), FHIT (Two-hybrid), FHIT (Reconstituted Complex), UBE2I (Affinity Capture-Western), UBE2I (Two-hybrid), MTMR6 (Affinity Capture-MS), FHIT (Affinity Capture-MS)

ESM2 similar proteins: A0A0J9UVG7, A0A1D3PCM3, A2QCJ2, A7EUB3, B6Q8T5, C8VP37, E4ZHV7, E9DV56, F4HYF3, F4KEV7, O13492, O47881, O76463, O89106, O94586, P0CQ16, P0CQ17, P31318, P40510, P42856, P49776, P49789, P51659, P51660, P54898, P87228, P97852, Q04344, Q0U796, Q1KZG4, Q2URJ0, Q4IER0, Q4IQC1, Q4WMU1, Q4X0Z7, Q59WG0, Q5AT15, Q5AZT7, Q7S8C4, Q7SHU9

Diamond homologs: A6ZYQ3, B3LFZ1, B5VGI4, C7GQV5, C8Z5L6, F4KEV7, O07513, O76463, O76464, O89106, P49775, P49776, P49789, P95937, P9WMK8, P9WMK9, P9WML0, P9WML1, Q04344, Q1KZG4, Q86KK2, Q9JIX3, P73481, Q58276, Q9Z863, C4LYI2, O31664, O94586, O94660, P0DP64, P0DP66, P0DP67, P0DP68, P26724, P32084, P47016, P47378, P49773, P49954, P55175

SIGNOR signaling

11 interactions.

AEffectBMechanism
FHITdown-regulatesMDM2
FHITup-regulatesTP53
FHITdown-regulatesAKT
FHITdown-regulatesAKT2
FHITdown-regulatesAKT3
FHIT“down-regulates quantity by repression”AXIN2“transcriptional regulation”
FHIT“down-regulates quantity by repression”BIRC5“transcriptional regulation”
FHITdown-regulatesCTNNB1binding
FHIT“down-regulates quantity by repression”MMP14“transcriptional regulation”
FHITdown-regulatesAKT1
SRC“up-regulates activity”FHITphosphorylation

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: activating (oncogene-like) across 1 cancer types — DLBCLNOS.

Clinical variants and AI predictions

ClinVar

86 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic5
Uncertain significance46
Likely benign18
Benign4

Top pathogenic / likely-pathogenic (6)

Variant IDHGVSClassification
3779467NM_002012.4(FHIT):c.280-26365_280-26364delPathogenic
545300NC_000003.12:g.(?60389119)(60571624_?)delLikely pathogenic
545301NC_000003.12:g.(?60408194)(60672864_?)delLikely pathogenic
545302NC_000003.12:g.(?60438915)(60817364_?)delLikely pathogenic
545303NC_000003.12:g.(?60501297)(60591815_?)delLikely pathogenic
974727NM_002012.4(FHIT):c.103+32489_103+54184delLikely pathogenic

SpliceAI

7408 predictions. Top by Δscore:

VariantEffectΔscore
3:59752324:T:Cacceptor_gain1.0000
3:59922423:G:Cacceptor_gain1.0000
3:59752321:GC:Gacceptor_loss0.9900
3:59752322:C:Aacceptor_loss0.9900
3:59752322:C:CCacceptor_gain0.9900
3:59752323:T:Cacceptor_gain0.9900
3:59752324:T:TCacceptor_gain0.9900
3:59888061:TTCTA:Tdonor_gain0.9900
3:59922411:CGTG:Cacceptor_gain0.9900
3:59922415:C:CCacceptor_gain0.9900
3:59922423:G:GCacceptor_gain0.9900
3:60011367:TCA:Tdonor_loss0.9900
3:60011368:CAC:Cdonor_loss0.9900
3:60011370:C:CTdonor_loss0.9900
3:60013149:TCATA:Tdonor_gain0.9900
3:60014002:CTCA:Cdonor_loss0.9900
3:60014003:TCAC:Tdonor_loss0.9900
3:60014004:CACCT:Cdonor_loss0.9900
3:60014005:ACC:Adonor_loss0.9900
3:60014006:CCTG:Cdonor_gain0.9900
3:60014265:C:CCacceptor_gain0.9900
3:60122639:AGAG:Adonor_gain0.9900
3:60272018:A:ACdonor_gain0.9900
3:60272019:C:CCdonor_gain0.9900
3:60348242:G:Cdonor_gain0.9900
3:60441010:T:TAdonor_gain0.9900
3:60447812:AAG:Adonor_gain0.9900
3:59752215:CTTTA:Cdonor_loss0.9800
3:59752216:TTTA:Tdonor_loss0.9800
3:59752217:TTACC:Tdonor_loss0.9800

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000004344 (3:60609366 C>A,T), RS1000004594 (3:59764216 T>A,C), RS1000005439 (3:60916601 A>C), RS1000007023 (3:59977877 T>C), RS1000008105 (3:60080106 G>A,C), RS1000009658 (3:60414371 T>A), RS1000016681 (3:60027515 G>A), RS1000017731 (3:60293306 T>C), RS1000018925 (3:61036046 G>A), RS1000019120 (3:60201687 T>C), RS1000021626 (3:59779053 G>A), RS1000021692 (3:60263495 T>C), RS1000022019 (3:60980713 A>G), RS1000023185 (3:60997738 G>A), RS1000025496 (3:60358628 T>C)

Disease associations

OMIM: gene MIM:601153 | disease phenotypes: MIM:114480, MIM:181500, MIM:209850

GenCC curated gene-disease

Mondo (9): primary ovarian failure (MONDO:0005387), familial ovarian cancer (MONDO:0016248), hereditary breast ovarian cancer syndrome (MONDO:0003582), hereditary breast carcinoma (MONDO:0016419), lip and oral cavity carcinoma (MONDO:0023644), schizophrenia (MONDO:0005090), autism (MONDO:0005260), primary amenorrhea (MONDO:1060208), megacolon (MONDO:0001273)

Orphanet (5): Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), Hereditary breast cancer (Orphanet:227535), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619), OBSOLETE: Familial ovarian cancer (Orphanet:213517), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)

HPO phenotypes

2 total (2 of 2 shown, HPO-id order):

HPOTerm
HP:0100753Schizophrenia
HP:0000717Autism

GWAS associations

85 associations (top):

StudyTraitp-value
GCST000281_13Attention deficit hyperactivity disorder8.000000e-06
GCST000578_5Major depressive disorder4.000000e-06
GCST000904_5Asperger disorder4.000000e-06
GCST000943_5Aortic root size8.000000e-06
GCST001431_1Adverse response to lamotrigine and phenytoin7.000000e-07
GCST001442_3Orofacial clefts7.000000e-06
GCST001591_10Response to citalopram treatment2.000000e-06
GCST001651_36Response to amphetamines2.000000e-06
GCST001712_27Myopia (pathological)3.000000e-06
GCST002104_5Bronchopulmonary dysplasia3.000000e-06
GCST002438_3Conotruncal heart defects1.000000e-06
GCST002497_6Blood pressure8.000000e-07
GCST002774_9Cognitive function6.000000e-06
GCST002783_279Body mass index1.000000e-10
GCST002783_41Body mass index3.000000e-07
GCST002783_634Body mass index2.000000e-10
GCST002783_74Body mass index3.000000e-06
GCST003501_1Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)8.000000e-06
GCST003992_31Photic sneeze reflex2.000000e-36
GCST004024_2Depressive symptom measurement or major depressive disorder7.000000e-10
GCST004136_26Methadone dose in opioid dependence6.000000e-06
GCST004495_38BMI (adjusted for smoking behaviour)2.000000e-10
GCST004495_39BMI (adjusted for smoking behaviour)4.000000e-15
GCST004495_40BMI (adjusted for smoking behaviour)3.000000e-07
GCST004497_129Body mass index (joint analysis main effects and smoking interaction)3.000000e-08
GCST004497_137Body mass index (joint analysis main effects and smoking interaction)2.000000e-16
GCST004497_138Body mass index (joint analysis main effects and smoking interaction)1.000000e-11
GCST004498_10BMI in smokers3.000000e-08
GCST004498_9BMI in smokers3.000000e-06
GCST004499_34BMI in non-smokers3.000000e-10

EFO canonical traits (28, from GWAS)

EFO IDTrait name
EFO:0004207pathological myopia
EFO:0005939parental genotype effect measurement
EFO:0006335systolic blood pressure
EFO:0004337intelligence
EFO:0004340body mass index
EFO:1001507asparaginase-induced acute pancreatitis
EFO:0007887autosomal dominant compelling helio-ophthalmic outburst syndrome
EFO:0007006depressive symptom measurement
EFO:0007907methadone dose measurement
EFO:0004318smoking behavior
EFO:0008002physical activity measurement
EFO:0006919cardiovascular event measurement
EFO:0008395response to darapladib
EFO:0008344response to placebo
EFO:0003892pulmonary function measurement
EFO:0008431maximal voluntary ventilation
EFO:0005116urinary metabolite measurement
EFO:0009764eye colour measurement
EFO:0009951response to surgery
EFO:0009953post-operative myocardial infarction
EFO:0004338body weight
EFO:0004612high density lipoprotein cholesterol measurement
EFO:0009819comparative body size at age 10, self-reported
EFO:0004952disease recurrence
EFO:0008343sex interaction measurement
EFO:0004531urate measurement
EFO:0007701spine bone mineral density
EFO:0009749age at first sexual intercourse measurement

MeSH disease descriptors (5)

DescriptorNameTree numbers
D001321Autistic DisorderF03.625.164.113.500
D061325Hereditary Breast and Ovarian Cancer SyndromeC04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431
D008531MegacolonC06.405.469.158.701
D016649Primary Ovarian InsufficiencyC12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750
C562840Breast Cancer, Familial (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL1795151 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 36,848 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL265502SURAMIN336,848

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

2 annotations.

VariantTypeLevelDrugsPhenotypes
rs49411Efficacy3antidepressantsMajor Depressive Disorder
rs760316Efficacy3interferon beta-1a;interferon beta-1bMultiple Sclerosis

PharmGKB variants

4 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs49411FHIT30.001antidepressants
rs760316FHIT32.501interferon beta-1a;interferon beta-1b
rs138741635FHIT0.000
rs241692FHIT0.000

Binding affinities (BindingDB)

24 measured of 24 human assays (24 total across all organisms); most potent 24 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
AppppA analog, 6 (X=S)KI35 nM
AppppA analog, 12 (X=S)KI40 nM
AppppA analog, 13 (X=S)KI65 nM
AppppA analog, 15 (X=S)KI78 nM
AppppA analog, 17 (X=S)KI110 nM
AppppA analog, 5 (X=S)KI220 nM
AppppA analog, 9 (X=S)KI230 nM
AppppA analog, 17 (X=O)KI420 nM
AppppA analog, 14 (X=S)KI700 nM
AppppA analog, 14 (X=O)KI900 nM
AppppA analog, 5 (X=O)KI1500 nM
AppppA analog, 12 (X=O)KI1500 nM
AppppA analog, 15 (X=O)KI1500 nM
AppppA analog, 1 (X=O)KI2600 nM
AppppA analog, 2 (X=S)KI2600 nM
AppppA analog, 16 (X=S)KI2700 nM
AppppA analog, 8 (X=S)KI3000 nM
AppppA analog, 13 (X=O)KI3200 nM
AppppA analog, 10 (X=S)KI3300 nM
AppppA analog, 6 (X=O)KI4700 nM
AppppA analog, 11 (X=S)KI5200 nM
AppppA analog, 7 (X=S)KI76000 nM
AppppA analog, 3 (X=S)KI86000 nM
AppppA analog, 4 (X=S)KI86000 nM

ChEMBL bioactivities

25 potent at pChembl≥5 of 31 total, top 25 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.46Ki35nMCHEMBL1812070
7.46Ki35nMCHEMBL1812069
7.46Ki35nMCHEMBL1812068
7.46Ki35nMCHEMBL1812067
7.46Ki35nMCHEMBL1812066
7.31IC5049nMCHEMBL5083166
7.22IC5060nMCHEMBL5079345
6.92IC50120nMCHEMBL5079345
6.85IC50140nMCHEMBL5078809
6.11IC50770nMCHEMBL5075611
6.00IC501010nMCHEMBL5093727
5.80IC501580nMCHEMBL5078205
5.72IC501900nMCHEMBL5078809
5.55IC502800nMCHEMBL5069986
5.46IC503430nMCHEMBL5076149
5.43IC503730nMCHEMBL5081769
5.40IC504000nMCHEMBL5088775
5.40IC503980nMCHEMBL5075193
5.37IC504240nMCHEMBL5093738
5.33IC504660nMCHEMBL1520857
5.30IC505000nMCHEMBL1444825
5.28IC505300nMCHEMBL5077048
5.26IC505500nMCHEMBL5092878
5.09IC508100nMCHEMBL5083554
5.06IC508800nMCHEMBL5083166

PubChem BioAssay actives

46 with measured affinity, of 119 total; 43 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-2-hydroxypropoxy]-hydroxyphosphinothioyl]oxymethyl]oxolane-3,4-diol612652: Inhibition of Fragile histidine triad protein hydrolytic activityki0.0350uM
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[2-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxypropoxy]-hydroxyphosphinothioyl]oxymethyl]oxolane-3,4-diol612652: Inhibition of Fragile histidine triad protein hydrolytic activityki0.0350uM
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[2,2-bis[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxymethyl]-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxypropoxy]-hydroxyphosphinothioyl]oxymethyl]oxolane-3,4-diol612652: Inhibition of Fragile histidine triad protein hydrolytic activityki0.0350uM
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[2-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxymethyl]-2-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxymethyl]-3-dihydroxyphosphinothioyloxypropoxy]-hydroxyphosphinothioyl]oxymethyl]oxolane-3,4-diol612652: Inhibition of Fragile histidine triad protein hydrolytic activityki0.0350uM
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-2-dihydroxyphosphinothioyloxypropoxy]-hydroxyphosphinothioyl]oxymethyl]oxolane-3,4-diol612652: Inhibition of Fragile histidine triad protein hydrolytic activityki0.0350uM
2-(6-aminopurin-9-yl)-5-[[[3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxy-2-hydroxypropoxy]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.0350uM
2-(6-aminopurin-9-yl)-5-[[[2-[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxymethyl]-2-[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfidophosphoryl]oxymethyl]-3-[hydroxy(oxido)phosphinothioyl]oxypropoxy]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.0400uM
10-(4-bromophenyl)-7,7-dimethyl-5,6,8,10-tetrahydroindeno[1,2-b]quinoline-9,11-dione1810935: Inhibition of human FHIT expressed in Escherichia coli BL21(DE3)-RIL cells using AP3A as substrate pretreated for 10 mins followed by substrate addition and measured after 1 hr by HPLC analysisic500.0490uM
2-[(4-bromo-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]-N-hydroxyacetamide1810921: Inhibition of recombinant human FHIT assessed as reduction in AP3Aase activity measured after 45 mins by HPLC analysisic500.0600uM
2-(6-aminopurin-9-yl)-5-[[[2,2-bis[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxymethyl]-3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfidophosphoryl]oxypropoxy]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.0650uM
2-(6-aminopurin-9-yl)-5-[[[2-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxy-3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfidophosphoryl]oxypropoxy]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.0780uM
1,3-bis[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxy]propan-2-yloxy-sulfidophosphinate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.1100uM
N-hydroxy-2-[(4-methyl-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]acetamide1810921: Inhibition of recombinant human FHIT assessed as reduction in AP3Aase activity measured after 45 mins by HPLC analysisic500.1400uM
(2R,3R,4S)-2-(6-aminopurin-9-yl)-5-[[[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxymethylidene-hydroxy-oxido-lambda5-phosphanyl]methoxy-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.2200uM
2-(6-aminopurin-9-yl)-5-[[3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxypropoxy-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.2300uM
[1-[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-3-[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxypropan-2-yl] phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.4200uM
[2,2-bis[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxymethyl]-3-dioxidophosphinothioyloxypropoxy]-sulfidophosphinate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.7000uM
4-[2-[(E)-(1-methyl-2,5-dioxoimidazolidin-4-ylidene)methyl]pyrrol-1-yl]benzoic acid1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic500.7700uM
[2-[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]-2-[[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]-3-phosphonatooxypropyl] phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki0.9000uM
diethyl 2-amino-5-methylthiophene-3,4-dicarboxylate1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic501.0100uM
[3-[[(3R,4S)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-2-[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]-2-[[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]propyl] hydrogen phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki1.5000uM
[1-[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-3-[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxypropan-2-yl] [(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki1.5000uM
[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl-hydroxy-oxido-lambda5-phosphanylidene]methyl [(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki1.5000uM
2-(2-pyridin-3-yl-4-pyridinyl)-3H-benzimidazole-5-carboxylic acid1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic501.5800uM
[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl] [[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-oxidophosphoryl] phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki2.6000uM
2-(6-aminopurin-9-yl)-5-[[2-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxyethoxy-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki2.6000uM
(2R,3R,4S)-2-(6-aminopurin-9-yl)-5-[[[[2-[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxy-3-[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfidophosphoryl]amino]propyl]amino]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki2.7000uM
N-hydroxy-2-[(4-methoxy-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]acetamide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic502.8000uM
2-[[[2-amino-3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]oxypropoxy]-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki3.0000uM
[3-[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-2-[[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]-2-[[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxymethyl]propyl] [(3R,4S)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki3.2000uM
(3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[3-[[[(3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]amino]propylamino]-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki3.3000uM
N-(furan-2-ylmethylcarbamoyl)-2-(5-nitro-2-oxo-1-pyridinyl)acetamide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic503.4300uM
4-[(E)-[(1,5-diphenyl-1,2,4-triazole-3-carbonyl)hydrazinylidene]methyl]benzoic acid1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic503.7300uM
4-hydroxy-6-oxo-1-phenylpyridazine-3-carbohydrazide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic503.9800uM
2-[(4-bromo-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]acetohydrazide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic504.0000uM
methyl 3-[(2S,5aS,8aR)-6-(2-methoxyacetyl)-1-methyl-5-oxo-3,4,5a,7,8,8a-hexahydro-2H-pyrrolo[3,2-e][1,4]diazepin-2-yl]propanoate1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic504.2400uM
4,9-dimethyl-3-(2H-tetrazol-5-ylmethoxy)-7,8,9,10-tetrahydrobenzo[c]chromen-6-one1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic504.6600uM
[3-[[(2R,3S,4R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphoryl]oxy-2-hydroxypropyl] [(4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki4.7000uM
4-methyl-3-(2H-tetrazol-5-ylmethoxy)-7,8,9,10-tetrahydrobenzo[c]chromen-6-one1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic505.0000uM
2-(6-aminopurin-9-yl)-5-[[3-[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-oxidophosphinothioyl]sulfanylpropylsulfanyl-oxidophosphinothioyl]oxymethyl]oxolane-3,4-diol1799560: Enzyme Inhibition Assay from Article 10.1186/1472-6769-1-3: “Di-, tri- and tetra-5’-O-phosphorothioadenosyl substituted polyols as inhibitors of Fhit: Importance of the alpha-beta bridging oxygen and beta phosphorus replacement.”ki5.2000uM
2-[(4-ethyl-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]-N-hydroxyacetamide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic505.3000uM
N-hydroxy-2-[(6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]acetamide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic505.5000uM
2-[(4-acetyl-6-oxo-7,8,9,10-tetrahydrobenzo[c]chromen-3-yl)oxy]-N-hydroxyacetamide1810916: Inhibition of recombinant human FHIT incubated for 1hr in presence of tokyogreen-labeled CMP probe by fluorescence based analysisic508.1000uM

CTD chemical–gene interactions

50 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneaffects methylation, decreases expression, increases methylation9
Aflatoxin B1affects expression, decreases expression, decreases methylation8
Tobacco Smoke Pollutionaffects methylation, increases abundance, increases methylation, decreases expression3
lasiocarpinedecreases expression2
methyleugenoldecreases expression2
Decitabineaffects methylation, affects expression, affects cotreatment, decreases expression, decreases reaction2
Methapyrileneaffects methylation, increases expression2
N-Nitrosopyrrolidinedecreases expression2
Valproic Acidaffects expression, increases expression2
aristolochic acid Idecreases expression1
testosterone enanthateaffects expression1
ponasterone Aaffects expression1
trichostatin Aaffects cotreatment, affects expression1
tris(2-butoxyethyl) phosphateaffects expression1
nickel sulfidedecreases expression, increases mutagenesis1
sodium arsenitedecreases expression, decreases reaction1
butyraldehydedecreases expression1
4-nitroso-N-phenylanilineaffects response to substance1
benzo(e)pyreneaffects methylation1
aflatoxin B2decreases methylation1
2-amino-3,8-dimethylimidazo(4,5-f)quinoxalinedecreases expression1
2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridinedecreases expression1
di-n-butylphosphoric acidaffects expression1
U 0126decreases expression, decreases reaction1
clothianidinincreases expression1
bisphenol Sdecreases methylation1
jinfukangaffects cotreatment, decreases expression1
2,3,5-trichloro-6-phenyl-(1,4)benzoquinonedecreases expression1
Sunitinibincreases expression1
alpha-Chlorohydrindecreases expression1

ChEMBL screening assays

21 unique, capped per target: 19 binding, 2 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1817387BindingInhibition of Fragile histidine triad protein hydrolytic activityEvaluation of influence of Ap4A analogues on Fhit-positive HEK293T cells; cytotoxicity and ability to induce apoptosis. — Bioorg Med Chem
CHEMBL3860849ADMETStability of compound assessed as human Fhit expressed in Escherichia coli BL21-mediated compound initial rate of hydrolysis per microgram of protein at 50 to 200 uM after 5 to 120 mins by RP-HPLC analysisPhosphorothioate analogs of P1,P3-di(nucleosid-5’-yl) triphosphates: Synthesis, assignment of the absolute configuration at P-atoms and P-stereodependent recognition by Fhit hydrolase. — Bioorg Med Chem

Cellosaurus cell lines

17 cell lines: 17 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_0623MDA-MB-436Cancer cell lineFemale
CVCL_1252HCC1428Cancer cell lineFemale
CVCL_1255HCC1569Cancer cell lineFemale
CVCL_1258HCC1806Cancer cell lineFemale
CVCL_A1FPHCC1569 GDC-0941_resistantCancer cell lineFemale
CVCL_C8VVHCC1806-EGFPCancer cell lineFemale
CVCL_C9DBHCC1428/Cas9-hygCancer cell lineFemale
CVCL_D7EJWHCO1Cancer cell lineMale
CVCL_D7ELWHCO5Cancer cell lineMale
CVCL_D7EMWHCO6Cancer cell lineMale

Clinical trials (associated diseases)

275 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00417066PHASE4COMPLETEDFlexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders
NCT00732693PHASE4COMPLETEDEvaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure
NCT00837616PHASE4COMPLETEDEstrogen Dosing in Turner Syndrome: Pharmacology and Metabolism
NCT01853501PHASE4UNKNOWNEffects of ADSC Therapy in Women With POF
NCT02783937PHASE4COMPLETEDFilgrastim for Premature Ovarian Insufficiency
NCT03535480PHASE4UNKNOWNAutologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure
NCT02562170PHASE4COMPLETEDProtexa® Versus TiLoopBra® in Immediate Breast Reconstruction- A Pilot Study
NCT01418118PHASE4COMPLETEDAssessment of the Effects of Pressors on Graft Blood Flow After Free Tissue Transfer Surgery
NCT03017053PHASE4UNKNOWNThe Optimal Neck Treatments Strategy of Early Oral Cancer Based on Adverse Pathological Factor
NCT03684707PHASE4UNKNOWNCancer Chemoprevention by Metformin Hydrochloride Compared to Placebo in Oral Potentially Malignant Lesions
NCT00140998PHASE3COMPLETEDEstrogen Treatment (Oral vs. Patches) in Turner Syndrome
NCT00673335PHASE3COMPLETEDLetrozole in Preventing Breast Cancer in Postmenopausal Women With a BRCA1 or BRCA2 Mutation
NCT00685256PHASE3COMPLETEDStandard Genetic Counseling With or Without a Decision Guide in Improving Communication Between Mothers Undergoing BRCA1/2 Testing and Their Minor-Age Children
NCT03162276PHASE3UNKNOWNTrial of Inquiry Based Stress Reduction (IBSR) Program for BRCA1/2 Mutation Carriers
NCT00158652PHASE3COMPLETEDAccelerated Radiotherapy and Concomitant Chemo-radiotherapy in HNSCC
NCT00158678PHASE3COMPLETEDIMRT Plus Cisplatin Versus Conventional Radiotherapy Plus Cisplatin in Stage III-IV HNSCC
NCT00402779PHASE3COMPLETEDErlotinib Prevention of Oral Cancer (EPOC)
NCT00655421PHASE3UNKNOWNOral Cancer Screening in Mumbai, India by Primary Health Care Workers
NCT00750503PHASE3COMPLETEDWorkplace Tobacco Cessation And Oral Cancer Screening Study
NCT00964977PHASE3COMPLETEDEffectiveness of Adjuvant Radiotherapy in Small Oropharyngeal Squamous Cell Cancer and Single Lymph Node Metastasis.
NCT01039298PHASE3UNKNOWNEfficacy of Optically-guided Surgery in the Management of Early-staged Oral Cancer - COOLS TRIAL
NCT03685409PHASE3UNKNOWNCancer Chemoprevention by Metformin Hydrochloride in Oral Potentially Malignant Lesions
NCT05721755PHASE3ACTIVE_NOT_RECRUITINGCombining Radiation Therapy With Immunotherapy for the Treatment of Metastatic Squamous Cell Carcinoma of the Head and Neck
NCT06589804PHASE3RECRUITINGTesting the Addition of Anti-Cancer Drug, Cetuximab, to Standard of Care Treatment (Pembrolizumab) for Returning or Spreading Head and Neck Cancer After Previous Treatment
NCT06737822PHASE3RECRUITINGUpfront Surgery Vs Induction Chemotherapy Followed By Surgery In Oral Cancers:
NCT07402538PHASE3NOT_YET_RECRUITINGSurgery With or Without Neoadjuvant Treatment of SBRT Plus Chemoimmunotherapy in Resectable Locally Advanced Oral and HPV-unrelated Oropharyngeal Squamous Cell Carcinoma
NCT07441681PHASE3NOT_YET_RECRUITINGComparing Radiation Plus Cetuximab to Radiation Plus Chemotherapy in People With Head and Neck Cancer Who Cannot Receive Cisplatin
NCT00001951PHASE2COMPLETEDHormone Replacement in Young Women With Premature Ovarian Failure
NCT00370019PHASE2WITHDRAWNEffects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure
NCT00429494PHASE2COMPLETEDGnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients
NCT03816852PHASE2SUSPENDEDThe Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency
NCT04536467PHASE2UNKNOWNPrevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients
NCT06117982PHASE2COMPLETEDThe Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency
NCT00253539PHASE2COMPLETEDArzoxifene or Tamoxifen in Preventing Breast Cancer in Premenopausal Women at High Risk for Breast Cancer
NCT00305695PHASE2COMPLETEDZoledronate or Observation in Maintaining Bone Mineral Density in Patients Who Are Undergoing Surgery to Remove Both Ovaries
NCT00321633PHASE2COMPLETEDCarboplatin or Docetaxel in Treating Women With Metastatic Genetic Breast Cancer
NCT01333748PHASE2COMPLETEDSearch Allelic Imbalance of Expression of BRCA Genes in Hereditary Risk of Breast and/or Ovarian Cancer
NCT01367639PHASE2COMPLETEDTrial of Inquiry Based Stress Reduction (IBSR) Program for BRCA1/2 Mutation Carriers
NCT00330382PHASE2COMPLETEDBowman-Birk Inhibitor Concentrate in Preventing Cancer in Patients With Oral Leukoplakia
NCT00400205PHASE2TERMINATEDStudy of Induction Docetaxel, Cisplatin and 5-Fluorouracil