FHL1

gene
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Also known as SLIM1KYO-TbA535K18.1FHL1BXMPMAFLH1AMGC111107

Summary

FHL1 (four and a half LIM domains 1, HGNC:3702) is a protein-coding gene on chromosome Xq26.3, encoding Four and a half LIM domains protein 1 (Q13642). May have an involvement in muscle development or hypertrophy.

This gene encodes a member of the four-and-a-half-LIM-only protein family. Family members contain two highly conserved, tandemly arranged, zinc finger domains with four highly conserved cysteines binding a zinc atom in each zinc finger. Expression of these family members occurs in a cell- and tissue-specific mode and these proteins are involved in many cellular processes. Mutations in this gene have been found in patients with Emery-Dreifuss muscular dystrophy. Multiple alternately spliced transcript variants which encode different protein isoforms have been described.

Source: NCBI Gene 2273 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): X-linked myopathy with postural muscle atrophy (Definitive, GenCC) — +5 more curated relationships
  • Clinical variants (ClinVar): 673 total — 75 pathogenic, 22 likely-pathogenic
  • Phenotypes (HPO): 120
  • MANE Select transcript: NM_001159699

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3702
Approved symbolFHL1
Namefour and a half LIM domains 1
LocationXq26.3
Locus typegene with protein product
StatusApproved
AliasesSLIM1, KYO-T, bA535K18.1, FHL1B, XMPMA, FLH1A, MGC111107
Ensembl geneENSG00000022267
Ensembl biotypeprotein_coding
OMIM300163
Entrez2273

Gene structure

Transcript identifiers

Ensembl transcripts: 41 — 36 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined

ENST00000370674, ENST00000370676, ENST00000370683, ENST00000394153, ENST00000394155, ENST00000420362, ENST00000434885, ENST00000449474, ENST00000452016, ENST00000456445, ENST00000458357, ENST00000477080, ENST00000477204, ENST00000535737, ENST00000539015, ENST00000543669, ENST00000618438, ENST00000625935, ENST00000626004, ENST00000627383, ENST00000627578, ENST00000627812, ENST00000628032, ENST00000628443, ENST00000628568, ENST00000628919, ENST00000629039, ENST00000630084, ENST00000630278, ENST00000630677, ENST00000630684, ENST00000651089, ENST00000651256, ENST00000651929, ENST00000652457, ENST00000652745, ENST00000862283, ENST00000862284, ENST00000862285, ENST00000862286, ENST00000952767

RefSeq mRNA: 15 — MANE Select: NM_001159699 NM_001159699, NM_001159700, NM_001159701, NM_001159702, NM_001159703, NM_001159704, NM_001167819, NM_001330659, NM_001369326, NM_001369327, NM_001369328, NM_001369329, NM_001369330, NM_001369331, NM_001449

CCDS: CCDS14655, CCDS55505, CCDS55506, CCDS55507, CCDS76036, CCDS83493

Canonical transcript exons

ENST00000370683 — 6 exons

ExonStartEnd
ENSE00000676980136208455136208641
ENSE00000890595136207016136207190
ENSE00000890598136207792136207961
ENSE00001453299136197047136197134
ENSE00003570762136206407136206588
ENSE00003764342136209871136211354

Expression profiles

Bgee: expression breadth ubiquitous, 291 present calls, max score 99.99.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 58.5651 / max 5480.9512, expressed in 1571 samples.

FANTOM5 promoters (29 alternative TSS)

Promoter IDTPM avgSamples expressed
19766919.8255424
19765213.19201391
1976518.89571480
1976716.3772279
1976683.8050250
1976501.71761020
1976530.9799480
1976490.4247201
2098260.4000161
1976590.3955166

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
skeletal muscle tissue of rectus abdominisUBERON:000451199.99gold quality
biceps brachiiUBERON:000150799.98gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450299.96gold quality
body of tongueUBERON:001187699.96gold quality
vastus lateralisUBERON:000137999.95gold quality
deltoidUBERON:000147699.95gold quality
diaphragmUBERON:000110399.94gold quality
skeletal muscle tissueUBERON:000113499.94gold quality
quadriceps femorisUBERON:000137799.94gold quality
urethraUBERON:000005799.93gold quality
tibialis anteriorUBERON:000138599.93gold quality
triceps brachiiUBERON:000150999.93gold quality
synovial jointUBERON:000221799.92gold quality
hindlimb stylopod muscleUBERON:000425299.92gold quality
gastrocnemiusUBERON:000138899.90gold quality
muscle organUBERON:000163099.90gold quality
gluteal muscleUBERON:000200099.89gold quality
blood vessel layerUBERON:000479799.89gold quality
saphenous veinUBERON:000731899.89gold quality
muscle of legUBERON:000138399.88gold quality
heart right ventricleUBERON:000208099.87gold quality
mucosa of stomachUBERON:000119999.84gold quality
right coronary arteryUBERON:000162599.83gold quality
vena cavaUBERON:000408799.82gold quality
skin of hipUBERON:000155499.80gold quality
ascending aortaUBERON:000149699.79gold quality
thoracic aortaUBERON:000151599.79gold quality
aortaUBERON:000094799.78gold quality
popliteal arteryUBERON:000225099.78gold quality
tibial arteryUBERON:000761099.78gold quality

Single-cell (SCXA)

Detected in 15 experiment(s), a significant marker in 15.

ExperimentMarker?Max mean expression
E-HCAD-13yes1407.22
E-GEOD-135922yes894.95
E-HCAD-1yes80.14
E-MTAB-10287yes67.38
E-MTAB-8410yes52.42
E-HCAD-11yes43.89
E-HCAD-10yes36.57
E-CURD-46yes25.25
E-GEOD-84465yes22.27
E-HCAD-5yes16.78
E-CURD-112yes10.65
E-MTAB-10553yes6.14
E-HCAD-9yes5.03
E-GEOD-130148yes4.19
E-ANND-3no0.00

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

72 targeting FHL1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-477599.9875.006394
HSA-MIR-6835-3P99.9370.492904
HSA-MIR-374A-5P99.9071.342923
HSA-MIR-374B-5P99.9069.982734
HSA-MIR-367199.9073.043897
HSA-MIR-153-5P99.8973.866317
HSA-MIR-544A99.8468.661965
HSA-MIR-808099.8267.521342
HSA-MIR-313399.8170.923506
HSA-MIR-451799.7669.191867
HSA-MIR-808499.7369.571760
HSA-MIR-119799.7067.751027
HSA-MIR-3059-5P99.7069.932491
HSA-MIR-120899.7068.281533
HSA-MIR-120599.6566.761826
HSA-MIR-10394-5P99.6566.831852
HSA-MIR-4666B99.6468.691282
HSA-MIR-29899.6367.561916
HSA-MIR-5003-5P99.6169.131624
HSA-MIR-3682-3P99.5867.63865
HSA-MIR-4649-3P99.5666.901783
HSA-MIR-7844-5P99.5568.561428
HSA-MIR-105-5P99.5469.242060
HSA-MIR-7853-5P99.5469.302055
HSA-MIR-1212399.5271.792990
HSA-MIR-608199.4866.071446
HSA-MIR-4728-3P99.4768.94981

Literature-anchored findings (GeneRIF, showing 40)

  • SLIM1 may play an important role during the early stages of skeletal muscle differentiation, specifically in alpha5beta1-integrin-mediated signaling pathways (PMID:12917103)
  • FHL1 is a novel regulator of myosin-binding protein C activity that may have a role in sarcomere assembly (PMID:16407297)
  • Fasting insulin and insulin sensitivity index responses to exercise training were associated with DNA sequence variation in FHL1 in white men. (PMID:17589823)
  • These results characterize TLX1 as a dual function regulator whose activity in respect to FHL1 is critically dependent upon its cellular concentration, as well as cell type and promoter context. (PMID:18073142)
  • Study characterized a new disorder, X-linked myopathy with postural muscle atrophy (XMPMA), and identified FHL1 as the causative gene. (PMID:18179888)
  • In a large Italian-American pedigree with dominant Scapuloperoneal syndrome all of the affected individuals have a missense change (c.365G–>C) in the FHL1 gene encoding FHL1. (PMID:18179901)
  • The results shows that HOXD13 gene mutation was not involved in outbreak in idiopathic congenital talipes equinovarus, but changes of HOXD13 and FHL1 gene expression related to the development of talipes equinovarus malformation. (PMID:18244901)
  • a novel laser microdissection/proteomics approach has helped identify both inherited and de novo mutations in FHL1, thereby defining a new X-linked protein aggregation disorder of muscle. (PMID:18274675)
  • Results support a role of FHL1 as a key molecular component in the I(Kur) complex in human atrium, where it likely regulates functional expression of KCNA5. (PMID:18281375)
  • Fhl1 gene was underexpressed in clinical gastric cancer. (PMID:18465173)
  • upregulated in various forms of PH, including idiopathic pulmonary arterial hypertension (PMID:18725486)
  • Hoxd13 and Fhl1 were expressed in the interdigital tissues of E12.5 rat embryo. Luciferase assay and EMSA identified a novel promoter region of Fhl1 that directly interacts with Hoxd13 (PMID:18758158)
  • FHL1 appears to modulate muscle mass and strength enhancement. (PMID:19075112)
  • Human four-and-a-half LIM family members suppress tumor cell growth through a TGF-beta-like signaling pathway. (PMID:19139564)
  • Four novel mutations are identified in FHL1: heterozygous missense mutations in patients 1 and 2 (fatal infantile form), in-frame deletion in patient 3, and hemizygous mutation in patient 4. All mutations are located in the second LIM domain of FHL1. (PMID:19171836)
  • The mutations detected were exclusive to the second LIM domain of FHL1 and were found in both sporadic as well as familial cases of reducing body myopathy. (PMID:19181672)
  • The results presented here suggested the cooperative transcriptional regulation of estrogen signaling by FHL1 and RIP140. (PMID:19401155)
  • As a consequence of C terminal FHL1 gene mutations, the X-linked myopathy characterized by postural muscle atrophy (XMPMA) phenotype and morphotype with cytoplasmic bodies are found. (PMID:19687455)
  • FHL1 should be considered as a gene associated with the X-linked Emery-Dreifuss muscular dystrophy phenotype, as well as with hypertrophic cardiomyopathy. (PMID:19716112)
  • The pH-regulated antigen 1 (Pra1) protein was identified as a novel Factor H and FHL-1 binding protein. (PMID:19850343)
  • Our finding expands the phenotypic spectrum of the recently identified FHL1-associated myopathies and widens the differential diagnosis of Emery-Dreifuss-like syndromes. (PMID:20186852)
  • This study reported a novel LIM2 domain mutation in FHL1 in a family with Reducing body myopathy with cytoplasmic bodies and spinal rigidity. (PMID:20571991)
  • Expression levels of FHL1 mRNA increased in all cell lines tested, as shown by RT-PCR. The methylation index of FHL1 in our samples was significantly higher in 70 BC specimens than in 10 normal bladder epithelium specimens. (PMID:20596604)
  • A novel missense mutation in the LIM2 domain of FHL1 co-segregated with X-linked scapuloperoneal myopathy in the family (PMID:20633900)
  • FHL1B/PP2A(Cbeta) interaction may illustrate a novel cell-cycle regulatory pathway. (PMID:20969868)
  • FHL1 protein expression is downregulated in thoracic aortic dissection. (PMID:21126853)
  • These results indicate that USP15 is involved in the regulation of hypertrophic responses in cardiac muscle through transcriptional and post-translational modulation of SLIM1. (PMID:21219870)
  • This review will profile each of the FHL1, with a comprehensive analysis of mutations, a comparison of the clinical and histopathological features and will present several hypotheses for the possible disease mechanism(s)–{REVIEW} (PMID:21310615)
  • We report on three British families with a heterogeneous myopathy clinical presentation segregating a single FHL1 gene mutation and haplotype, suggesting that this represents a founder mutation. (PMID:21629301)
  • reduced expression of FHL1 may play an important role in the development and progression of lung cancer. (PMID:21702045)
  • In order to substantiate a possible relation between K(v1.5) and FHL1C, a pull-down assay was performed. (PMID:22053194)
  • FHL-1 may regulate estrogen receptor signaling function through regulation of AKT activation besides the physical and functional interaction with Estrogen receptor alpha. (PMID:22094188)
  • FHL1 dystrophies are associated with myofibrillar myopathies pathology; mutations in the LIM2 domain are associated with reducing bodies composed of distinct tubulofilaments. (PMID:22094483)
  • The decrease in or loss of FHL1 expression may be related to the incidence, progression, invasiveness, and metastatic potential of gastric cancer. (PMID:22143536)
  • FHL1-3 inhibit HIF-1 transcriptional activity and HIF-1alpha transactivation domain function by oxygen-independent mechanisms. (PMID:22219185)
  • FHL1 is a novel disease gene for hypertrophic cardiomyopathy. (PMID:22523091)
  • A mother, daughter, and son suffering from FHL1 myopathy have a mutation in the second LIM domain of fhl1 with musculoskeletal involvement. (PMID:22541254)
  • FHL1 is a methylation-silenced tumor-suppressor gene on chromosome X in gastrointestinal cancers, and that its silencing contributes to the formation of an epigenetic field for cancerization. (PMID:22689052)
  • A novel mechanism involving four-and-a-half LIM domain protein-1 and extracellular signal-regulated kinase-2 regulates titin phosphorylation and mechanics. (PMID:22778266)
  • C224W mutation of FHLi protein had slightly elevated pulmonary artery pressure (PMID:22923418)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriofhl1bENSDARG00000056653
danio_reriofhl1aENSDARG00000071498
mus_musculusFhl1ENSMUSG00000023092
mus_musculusFhl4ENSMUSG00000050035
rattus_norvegicusFhl4ENSRNOG00000006998

Paralogs (20): LMO3 (ENSG00000048540), LHX5 (ENSG00000089116), ZFHX4 (ENSG00000091656), LHX2 (ENSG00000106689), LHX6 (ENSG00000106852), LHX3 (ENSG00000107187), LHX4 (ENSG00000121454), LMO2 (ENSG00000135363), ZFHX2 (ENSG00000136367), LMX1B (ENSG00000136944), ZFHX3 (ENSG00000140836), LMO4 (ENSG00000143013), LHX9 (ENSG00000143355), CRIP3 (ENSG00000146215), LHX8 (ENSG00000162624), LMX1A (ENSG00000162761), LMO1 (ENSG00000166407), CRIP2 (ENSG00000182809), CRIP1 (ENSG00000213145), LHX1 (ENSG00000273706)

Protein

Protein identifiers

Four and a half LIM domains protein 1Q13642 (reviewed: Q13642)

Alternative names: Skeletal muscle LIM-protein 1

All UniProt accessions (18): A0A0D9SEY7, A0A0D9SFB0, A0A0D9SFI6, A0A0D9SFZ9, A0A0D9SGB2, A0A0D9SGC5, A0A0D9SGD1, A0A494C0D6, A0A494C0J3, A0A494C1G1, Q13642, Q5JXH7, Q5JXH8, Q5JXH9, Q5JXI0, Q5JXI2, Q5JXI3, Q5JXI8

UniProt curated annotations — full annotation on UniProt →

Function. May have an involvement in muscle development or hypertrophy.

Subunit / interactions. (Microbial infection) Interacts (via LIM domain 1) with Chikungunya virus non-structural protein 3 (via C-terminus); this interaction is required for viral RNA replication.

Subcellular location. Cytoplasm Cytoplasm. Nucleus Nucleus. Cytoplasm. Cytosol.

Tissue specificity. Isoform 1 is highly expressed in skeletal muscle and to a lesser extent in heart, placenta, ovary, prostate, testis, small intestine, colon and spleen. Expression is barely detectable in brain, lung, liver, kidney, pancreas, thymus and peripheral blood leukocytes. Isoform 2 is expressed in brain, skeletal muscle and to a lesser extent in heart, colon, prostate and small intestine. Isoform 3 is expressed in testis, heart and skeletal muscle.

Disease relevance. Emery-Dreifuss muscular dystrophy 6, X-linked (EDMD6) [MIM:300696] A form of Emery-Dreifuss muscular dystrophy, a degenerative myopathy characterized by weakness and atrophy of muscle without involvement of the nervous system, early contractures of the elbows, Achilles tendons and spine, and cardiomyopathy associated with cardiac conduction defects. The disease is caused by variants affecting distinct genetic loci, including the gene represented in this entry. Scapuloperoneal myopathy, X-linked dominant (SPM) [MIM:300695] A disease characterized by progressive muscle weakness and wasting, upper and lower limbs weakness, foot drop, scapular winging, and myopathic changes on muscle biopsy. Most affected individuals become wheelchair-bound. The disease is caused by variants affecting the gene represented in this entry. Myopathy, X-linked, with postural muscle atrophy (XMPMA) [MIM:300696] A progressive muscular dystrophy with onset in adulthood. Affected individuals develop a proximal myopathy characterized by specific atrophy of postural muscles, limited neck flexion, bent spine, contractures of the Achilles tendon, respiratory problems, and cardiomyopathy. Patients may show muscle hypertrophy in the early stages of the disorder. The disease is caused by variants affecting the gene represented in this entry. Reducing body myopathy, X-linked 1A, severe, with infantile or early childhood onset (RBMX1A) [MIM:300717] A rare myopathy clinically characterized by rapidly progressive muscular weakness, and pathologically by the presence of intracytoplasmic inclusion bodies strongly stained by menadione-linked alpha-glycerophosphate dehydrogenase in the absence of substrate, alpha-glycerophosphate. The term ‘reducing body’ refers to the reducing activity of the inclusions to nitroblue tetrazolium in the absence of substrate. This condition is also commonly associated with rimmed vacuoles and cytoplasmic bodies. Death in childhood is frequent in the severe form of the disease, due to respiratory failure. The disease is caused by variants affecting the gene represented in this entry. Reducing body myopathy, X-linked 1B, with late childhood or adult onset (RBMX1B) [MIM:300718] A rare myopathy clinically characterized by rapidly progressive muscular weakness, and pathologically by the presence of intracytoplasmic inclusion bodies strongly stained by menadione-linked alpha-glycerophosphate dehydrogenase in the absence of substrate, alpha-glycerophosphate. The term ‘reducing body’ refers to the reducing activity of the inclusions to nitroblue tetrazolium in the absence of substrate. This condition is also commonly associated with rimmed vacuoles and cytoplasmic bodies. The disease is caused by variants affecting the gene represented in this entry. Uruguay faciocardiomusculoskeletal syndrome (FCMSU) [MIM:300280] An X-linked recessive syndrome characterized by brachyturricephaly, pugilistic coarse facies, a muffled voice, cardiomyopathy, muscular hypertrophy, broad hands, wide feet with progressive pes cavus deformities, dislocation of toes, variable congenital hip dislocation, and scoliosis. The disease is caused by variants affecting the gene represented in this entry.

Isoforms (5)

UniProt IDNamesCanonical?
Q13642-22, FHL1B, SLIMMERyes
Q13642-11, FHL1, FHL1A, SLIM1
Q13642-33, FHL1C
Q13642-44
Q13642-55

RefSeq proteins (15): NP_001153171, NP_001153172, NP_001153173, NP_001153174, NP_001153175, NP_001153176, NP_001161291, NP_001317588, NP_001356255, NP_001356256, NP_001356257, NP_001356258, NP_001356259, NP_001356260, NP_001440 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001781Znf_LIMDomain
IPR042997Fhl1Family
IPR056807LIM_FHL1/2/3/5_NDomain

Pfam: PF00412, PF25076

UniProt features (63 total): sequence variant 20, strand 19, sequence conflict 5, splice variant 4, turn 4, domain 3, helix 3, initiator methionine 1, chain 1, zinc finger region 1, modified residue 1, cross-link 1

Structure

Experimental structures (PDB)

4 structures.

PDBMethodResolution (Å)
1X63SOLUTION NMR
2CUPSOLUTION NMR
2CURSOLUTION NMR
2EGQSOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q13642-F173.110.40

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (2): 4, 86

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 594 (showing top): GOBP_POTASSIUM_ION_TRANSPORT, VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_MEMBRANE_DEPOLARIZATION, ZHAN_LATE_DIFFERENTIATION_GENES_UP, CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN, TSENG_IRS1_TARGETS_UP, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, CHIARETTI_T_ALL_REFRACTORY_TO_THERAPY, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_GROWTH, HSIAO_HOUSEKEEPING_GENES, MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP, TGACCTY_ERR1_Q2, GOBP_REGULATION_OF_MEMBRANE_DEPOLARIZATION

GO Biological Process (8): muscle organ development (GO:0007517), animal organ morphogenesis (GO:0009887), negative regulation of G2/M transition of mitotic cell cycle (GO:0010972), cell differentiation (GO:0030154), negative regulation of cell growth (GO:0030308), regulation of atrial cardiac muscle cell membrane depolarization (GO:0060371), positive regulation of potassium ion transmembrane transport (GO:1901381), negative regulation of G1/S transition of mitotic cell cycle (GO:2000134)

GO Molecular Function (6): zinc ion binding (GO:0008270), transmembrane transporter binding (GO:0044325), channel activator activity (GO:0099103), potassium channel activator activity (GO:0099104), protein binding (GO:0005515), metal ion binding (GO:0046872)

GO Cellular Component (5): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
animal organ development2
negative regulation of mitotic cell cycle phase transition2
cellular anatomical structure2
muscle structure development1
anatomical structure morphogenesis1
G2/M transition of mitotic cell cycle1
regulation of G2/M transition of mitotic cell cycle1
negative regulation of cell cycle G2/M phase transition1
cellular developmental process1
regulation of cell growth1
cell growth1
negative regulation of growth1
negative regulation of cellular process1
regulation of membrane depolarization1
positive regulation of potassium ion transport1
potassium ion transmembrane transport1
regulation of potassium ion transmembrane transport1
positive regulation of cation transmembrane transport1
G1/S transition of mitotic cell cycle1
negative regulation of cell cycle G1/S phase transition1
regulation of G1/S transition of mitotic cell cycle1
transition metal ion binding1
protein binding1
channel activity1
channel regulator activity1
transporter activator activity1
potassium channel activity1
potassium channel regulator activity1
channel activator activity1
binding1
cation binding1
intracellular membrane-bounded organelle1
intracellular anatomical structure1
cytoplasm1
membrane1
cell periphery1
cell-substrate junction1

Protein interactions and networks

STRING

1092 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
FHL1RBPJQ06330846
FHL1INPP5AQ14642762
FHL1EMDP50402707
FHL1MYBPC3Q14896690
FHL1TTNQ8WZ42688
FHL1MYBPC2Q14324591
FHL1IGFBP5P24593588
FHL1ENO1P06733500
FHL1MYOD1P15172496
FHL1FHL2Q14192480
FHL1DCUN1D5Q9BTE7461
FHL1MYOTQ9UBF9450
FHL1GRIN2DO15399433
FHL1TMEM43Q9BTV4417
FHL1PXNP49023411

IntAct

94 interactions, top by confidence:

ABTypeScore
PDLIM7BAG3psi-mi:“MI:0914”(association)0.800
MAPK14OBSL1psi-mi:“MI:0914”(association)0.790
CNOT3CNOT1psi-mi:“MI:0914”(association)0.740
RHOACTSApsi-mi:“MI:0914”(association)0.730
CFTRESYT2psi-mi:“MI:0914”(association)0.710
AKAP12FHL1psi-mi:“MI:0915”(physical association)0.670
FHL1NRIP1psi-mi:“MI:0915”(physical association)0.630
NRIP1FHL1psi-mi:“MI:0407”(direct interaction)0.630
NRIP1FHL1psi-mi:“MI:0915”(physical association)0.630
AKAP12HSPA12Apsi-mi:“MI:0914”(association)0.530
ZNF71DKC1psi-mi:“MI:0914”(association)0.530
GPS1PXDNLpsi-mi:“MI:0914”(association)0.530
MANSC1SMPD2psi-mi:“MI:0914”(association)0.530
FHL1SRPK1psi-mi:“MI:0217”(phosphorylation reaction)0.440
FHL1ESR1psi-mi:“MI:0915”(physical association)0.400
FHL1ZNF16psi-mi:“MI:0915”(physical association)0.370
FHL1DBN1psi-mi:“MI:0915”(physical association)0.370
FHL1DEAF1psi-mi:“MI:0915”(physical association)0.370
EEDFHL1psi-mi:“MI:0915”(physical association)0.370
HES1FHL1psi-mi:“MI:0915”(physical association)0.370
PDE4DIPFHL1psi-mi:“MI:0915”(physical association)0.370
TXNIPFHL1psi-mi:“MI:0915”(physical association)0.370
CFHL1psi-mi:“MI:0915”(physical association)0.370
RBPJSAMD1psi-mi:“MI:0914”(association)0.350
RBPJRPA2psi-mi:“MI:0914”(association)0.350
JUNpsi-mi:“MI:0914”(association)0.350
JUNTPM3psi-mi:“MI:0914”(association)0.350
TANKCNOT1psi-mi:“MI:0914”(association)0.350

BioGRID (245): SRF (Reconstituted Complex), EP300 (Affinity Capture-Western), CREBBP (Affinity Capture-Western), Nfatc1 (Reconstituted Complex), Nfatc1 (Affinity Capture-Western), Nfatc1 (Co-localization), TTN (Two-hybrid), FHL1 (Two-hybrid), MYBPC1 (Two-hybrid), MYBPC1 (Affinity Capture-Western), FHL1 (Reconstituted Complex), ESR1 (Affinity Capture-Western), AKT1 (Affinity Capture-Western), FHL1 (Affinity Capture-MS), FHL1 (Affinity Capture-MS)

ESM2 similar proteins: A0M8R4, O04193, O35115, O70433, O80839, P21291, P29675, P47875, P50238, P50461, P50462, P50463, P50464, P53777, P63254, P63255, P67966, P67967, P97315, P97447, Q07DY3, Q07DZ4, Q09YI0, Q13642, Q13643, Q14192, Q16527, Q1ECF5, Q2IBA3, Q2KI95, Q2QLF4, Q2YDK0, Q32LE9, Q3MHY1, Q3ZBI6, Q4R7A4, Q4U0T9, Q500W4, Q56K04, Q5RC52

Diamond homologs: A0A1L8F1M4, A0M8R4, A0M8S5, A0M8U6, A1Z6W3, A8WH69, O35115, O43294, O43900, O60711, O70433, O94929, P47226, P48059, P49023, P49024, P50464, P97447, Q00PK1, Q07DW1, Q07DX3, Q07DY3, Q07DZ4, Q07E27, Q07E40, Q07E51, Q09476, Q09YI0, Q09YJ2, Q09YK3, Q09YL5, Q09YN8, Q108U9, Q13642, Q13643, Q14192, Q174I2, Q17QE2, Q28FG2, Q292U2

SIGNOR signaling

5 interactions.

AEffectBMechanism
RING1up-regulatesFHL1binding
PIAS1down-regulatesFHL1sumoylation
SRC“up-regulates activity”FHL1phosphorylation
FHL1down-regulatesRBPJbinding

Disease & clinical

Clinical variants and AI predictions

ClinVar

673 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic75
Likely pathogenic22
Uncertain significance263
Likely benign186
Benign17

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1071343NM_001159699.2(FHL1):c.243C>A (p.Cys81Ter)Pathogenic
1071860NC_000023.10:g.(?135288556)(135293528_?)delPathogenic
1074316NM_001159699.2(FHL1):c.590G>A (p.Trp197Ter)Pathogenic
11547NM_001159699.2(FHL1):c.413G>C (p.Trp138Ser)Pathogenic
11549NM_001159699.2(FHL1):c.428_430dup (p.Phe143_Thr144insIle)Pathogenic
11550NM_001159699.2(FHL1):c.415C>T (p.His139Tyr)Pathogenic
11551NM_001159699.2(FHL1):c.443G>T (p.Cys148Phe)Pathogenic
11554NM_001159699.2(FHL1):c.497G>A (p.Cys166Tyr)Pathogenic
11555NM_001159699.2(FHL1):c.358T>C (p.Cys120Arg)Pathogenic
11556NM_001159699.2(FHL1):c.889T>G (p.Ter297Glu)Pathogenic
11557NM_001159699.2(FHL1):c.673T>C (p.Cys225Arg)Pathogenic
11558NM_001159699.2(FHL1):c.865dup (p.Cys289fs)Pathogenic
11559NM_001159702.3(FHL1):c.838G>A (p.Val280Met)Pathogenic
11560NM_001159699.2(FHL1):c.736+1G>APathogenic
11561NM_001159699.2(FHL1):c.416A>T (p.His139Leu)Pathogenic
11562NM_001159699.2(FHL1):c.417C>G (p.His139Gln)Pathogenic
11563NM_001159699.2(FHL1):c.499_507del (p.Val167_Cys169del)Pathogenic
1184470NM_001159699.2(FHL1):c.708_736+22delPathogenic
1322915NM_001159699.2(FHL1):c.519dup (p.Phe174fs)Pathogenic
1359487NM_001159699.2(FHL1):c.55G>T (p.Glu19Ter)Pathogenic
1363228NM_001159699.2(FHL1):c.414del (p.Trp138fs)Pathogenic
1392309NM_001159699.2(FHL1):c.417C>A (p.His139Gln)Pathogenic
1404846NM_001159699.2(FHL1):c.505T>A (p.Cys169Ser)Pathogenic
1457116NM_001159699.2(FHL1):c.618del (p.Cys207fs)Pathogenic
1457827NM_001159699.2(FHL1):c.288del (p.Phe96fs)Pathogenic
1458011NM_001159699.2(FHL1):c.441del (p.Cys148fs)Pathogenic
1459000NM_001159699.2(FHL1):c.875G>A (p.Cys292Tyr)Pathogenic
1500210NM_001159699.2(FHL1):c.736+1G>CPathogenic
1506742NM_001159699.2(FHL1):c.863_864dup (p.Cys289fs)Pathogenic
1958260NM_001159699.2(FHL1):c.801delinsAA (p.His267fs)Pathogenic

SpliceAI

1036 predictions. Top by Δscore:

VariantEffectΔscore
X:136206404:CAGGT:Cacceptor_loss1.0000
X:136206405:A:AGacceptor_gain1.0000
X:136206405:A:Cacceptor_loss1.0000
X:136206406:G:GAacceptor_gain1.0000
X:136206406:GGT:Gacceptor_gain1.0000
X:136206406:GGTC:Gacceptor_gain1.0000
X:136206588:GGTA:Gdonor_loss1.0000
X:136206589:GTA:Gdonor_loss1.0000
X:136206590:T:Adonor_loss1.0000
X:136207006:T:TAacceptor_gain1.0000
X:136207007:G:Aacceptor_gain1.0000
X:136207011:TCCA:Tacceptor_loss1.0000
X:136207014:A:AGacceptor_gain1.0000
X:136207014:AG:Aacceptor_gain1.0000
X:136207014:AGGAG:Aacceptor_gain1.0000
X:136207015:G:GTacceptor_gain1.0000
X:136207015:GG:Gacceptor_gain1.0000
X:136207015:GGA:Gacceptor_gain1.0000
X:136207015:GGAGG:Gacceptor_gain1.0000
X:136207188:CAG:Cdonor_loss1.0000
X:136207189:AG:Adonor_loss1.0000
X:136207191:G:GAdonor_loss1.0000
X:136207192:T:Adonor_loss1.0000
X:136207787:T:TAacceptor_gain1.0000
X:136207788:GCA:Gacceptor_loss1.0000
X:136207789:CA:Cacceptor_loss1.0000
X:136207790:A:ACacceptor_loss1.0000
X:136207790:A:AGacceptor_gain1.0000
X:136207791:G:GTacceptor_gain1.0000
X:136207791:GGA:Gacceptor_gain1.0000

AlphaMissense

1998 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
X:136206552:T:GC40W1.000
X:136208515:T:CC188R1.000
X:136208517:T:GC188W1.000
X:136208551:T:CF200L1.000
X:136208553:C:AF200L1.000
X:136208553:C:GF200L1.000
X:136206451:T:AC7S0.999
X:136206451:T:CC7R0.999
X:136206452:G:CC7S0.999
X:136206453:C:GC7W0.999
X:136206514:T:CC28R0.999
X:136206523:T:AC31S0.999
X:136206523:T:CC31R0.999
X:136206524:G:CC31S0.999
X:136206525:C:GC31W0.999
X:136206526:T:CF32L0.999
X:136206528:T:AF32L0.999
X:136206528:T:GF32L0.999
X:136206550:T:AC40S0.999
X:136206550:T:CC40R0.999
X:136206551:G:AC40Y0.999
X:136206551:G:CC40S0.999
X:136206551:G:TC40F0.999
X:136206559:T:AC43S0.999
X:136206559:T:CC43R0.999
X:136206560:G:CC43S0.999
X:136207040:T:AW61R0.999
X:136207040:T:CW61R0.999
X:136207052:T:CC65R0.999
X:136207053:G:AC65Y0.999

dbSNP variants (sampled 300 via entrez): RS1000001684 (X:136167626 T>G), RS1000063544 (X:136150756 C>T), RS1000095235 (X:136160748 A>C,G), RS1000169066 (X:136160299 C>T), RS1000224196 (X:136173751 T>G), RS1000246296 (X:136186274 C>G), RS1000284030 (X:136171945 C>T), RS1000365223 (X:136178034 T>A,G), RS1000369998 (X:136182935 A>G), RS1000419246 (X:136177568 T>C), RS1000552873 (X:136147686 C>T), RS1000596854 (X:136186669 A>G), RS1000637400 (X:136196279 C>T), RS1000689875 (X:136195430 G>A), RS1000736016 (X:136169269 G>A)

Disease associations

OMIM: gene MIM:300163 | disease phenotypes: MIM:300696, MIM:300280, MIM:300695, MIM:300717, MIM:300718, MIM:300243, MIM:160150, MIM:267700, MIM:192600, MIM:310300

GenCC curated gene-disease

DiseaseClassificationInheritance
X-linked myopathy with postural muscle atrophyDefinitiveX-linked
myopathy, reducing body, X-linked, early-onset, severeStrongX-linked
FHL1-related myopathyStrongX-linked
X-linked scapuloperoneal muscular dystrophySupportiveX-linked
reducing body myopathySupportiveX-linked
X-linked Emery-Dreifuss muscular dystrophySupportiveX-linked

Mondo (15): X-linked myopathy with postural muscle atrophy (MONDO:0010401), Uruguay Faciocardiomusculoskeletal syndrome (MONDO:0010292), X-linked scapuloperoneal muscular dystrophy (MONDO:0010400), myopathy, reducing body, X-linked, early-onset, severe (MONDO:0010414), myopathy, reducing body, X-linked, childhood-onset (MONDO:0010415), Christianson syndrome (MONDO:0010278), centronuclear myopathy (MONDO:0018947), Emery-Dreifuss muscular dystrophy 6, X-linked (MONDO:0800318), familial hemophagocytic lymphohistiocytosis type 1 (MONDO:0009974), familial hypertrophic cardiomyopathy (MONDO:0024573), Emery-Dreifuss muscular dystrophy (MONDO:0016830), hypertrophic cardiomyopathy (MONDO:0005045), reducing body myopathy (MONDO:0019948), X-linked Emery-Dreifuss muscular dystrophy (MONDO:0010680), FHL1-related myopathy (MONDO:0800462)

Orphanet (10): X-linked myopathy with postural muscle atrophy (Orphanet:178461), X-linked scapuloperoneal muscular dystrophy (Orphanet:431272), Reducing body myopathy (Orphanet:97239), Christianson syndrome (Orphanet:85278), Centronuclear myopathy (Orphanet:595), Familial hemophagocytic lymphohistiocytosis (Orphanet:540), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Emery-Dreifuss muscular dystrophy (Orphanet:261), Rare hypertrophic cardiomyopathy (Orphanet:217569), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155)

HPO phenotypes

120 total (30 of 120 shown, HPO-id order):

HPOTerm
HP:0000232Everted lower lip vermilion
HP:0000244Brachyturricephaly
HP:0000278Retrognathia
HP:0000336Prominent supraorbital ridges
HP:0000339Pugilistic facies
HP:0000358Posteriorly rotated ears
HP:0000369Low-set ears
HP:0000445Wide nose
HP:0000448Prominent nose
HP:0000470Short neck
HP:0000475Broad neck
HP:0000494Downslanted palpebral fissures
HP:0000508Ptosis
HP:0000574Thick eyebrow
HP:0000664Synophrys
HP:0000767Pectus excavatum
HP:0000912Sprengel anomaly
HP:0001169Broad palm
HP:0001249Intellectual disability
HP:0001252Hypotonia
HP:0001265Hyporeflexia
HP:0001284Areflexia
HP:0001288Gait disturbance
HP:0001315Reduced tendon reflexes
HP:0001371Flexion contracture
HP:0001374Congenital hip dislocation
HP:0001387Joint stiffness
HP:0001417X-linked inheritance
HP:0001419X-linked recessive inheritance
HP:0001423X-linked dominant inheritance

GWAS associations

0 associations (top):

MeSH disease descriptors (8)

DescriptorNameTree numbers
D002312Cardiomyopathy, HypertrophicC14.280.238.100; C14.280.484.048.750.070.160
D024741Cardiomyopathy, Hypertrophic, FamilialC14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160
D020389Muscular Dystrophy, Emery-DreifussC05.651.534.500.350; C10.668.491.175.500.350; C16.320.322.625; C16.320.577.350
D000083143X-Linked Emery-Dreifuss Muscular DystrophyC05.651.534.500.350.500; C10.668.491.175.500.350.500; C16.320.322.625.500; C16.320.577.350.500
C567484Mental Retardation, X-Linked, Syndromic, Christianson Type (supp.)
C567468Myopathy, Reducing Body, X-Linked, Childhood-Onset (supp.)
C567469Myopathy, Reducing Body, X-Linked, Early-Onset, Severe (supp.)
C564544Uruguay Faciocardiomusculoskeletal Syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

79 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Adecreases expression, increases methylation4
Valproic Acidaffects expression, decreases methylation, increases expression4
bisphenol Sdecreases methylation, increases expression2
Doxorubicindecreases expression, affects expression2
Estradiolaffects cotreatment, decreases expression, increases expression, decreases reaction2
Nickeldecreases expression2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
aristolochic acid Idecreases expression1
FR900359increases phosphorylation1
2,4,6-tribromophenoldecreases expression1
triphenyl phosphateaffects expression1
6-hydroxy-5-((p- sulfophenyl)azo)-2-naphthalenesulfonic acid disodium saltaffects cotreatment, increases expression1
pirinixic acidaffects binding, increases activity, increases expression1
decabromobiphenyl etherdecreases expression1
beta-lapachoneincreases expression1
sulforaphanedecreases expression1
tetrabromobisphenol Adecreases expression1
perfluorooctanoic acidincreases expression1
doxifluridinedecreases response to substance1
manganese chloridedecreases expression1
potassium chromate(VI)decreases expression1
1-UFT protocoldecreases response to substance1
S-(1,2-dichlorovinyl)cysteinedecreases expression, affects cotreatment1
S 1 (combination)decreases response to substance1
CGP 52608increases reaction, affects binding1
chloropicrindecreases expression1
entinostatincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
bisphenol Bincreases expression1
abrinedecreases expression1

Cellosaurus cell lines

7 cell lines: 4 cancer cell line, 2 induced pluripotent stem cell, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1S4Abcam HeLa FHL1 KOCancer cell lineFemale
CVCL_C9LIINEUi003-AInduced pluripotent stem cellMale
CVCL_C9LJINEUi004-AInduced pluripotent stem cellFemale
CVCL_D7PWUbigene A-549 FHL1 KOCancer cell lineMale
CVCL_D8LEUbigene HCT 116 FHL1 KOCancer cell lineMale
CVCL_D9EWUbigene HEK293 FHL1 KOTransformed cell lineFemale
CVCL_E0D3Ubigene HeLa FHL1 KOCancer cell lineFemale

Clinical trials (associated diseases)

243 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00879060PHASE4COMPLETEDClinical and Therapeutic Implications of Fibrosis in Hypertrophic Cardiomyopathy
NCT01721967PHASE4COMPLETEDRanolazine for the Treatment of Chest Pain in HCM Patients
NCT02948998PHASE4UNKNOWNEvaluating the Effect of Spironolactone on Hypertrophic Cardiomyopathy
NCT03249272PHASE4TERMINATEDMicrovascular Dysfunction in Nonischemic Cardiomyopathy: Insights From CMR Assessment of Coronary Flow Reserve
NCT04133532PHASE4COMPLETEDEffect of Metoprolol in Post Alcohol Septal Ablation Patients With Hypertrophic Cardiomyopathy
NCT06401343PHASE4RECRUITINGUse of SGLT2i in noHCM With HFpEF
NCT07103655PHASE4NOT_YET_RECRUITINGThe Therapeutic Value of Mavacamten in Hypertrophic Cardiomyopathy With Mid-to-Apical Left Ventricular Obstruction
NCT07600177PHASE4RECRUITINGMavacamten to Aficamten Transition in Patients With Obstructive Hypertrophic Cardiomyopathy
NCT00317967PHASE3COMPLETEDStudy to Determine if Atorvastatin Reduces Size and Stiffness of Muscle in the Left Ventricle of the Heart
NCT00698074PHASE3UNKNOWNDiastolic Ventricular Interaction and the Effects of Biventricular Pacing in Hypertrophic Cardiomyopathy
NCT00821353PHASE3COMPLETEDAntiarrhythmic Therapy Versus Catheter Ablation for Atrial Fibrillation in Hypertrophic Cardiomyopathy
NCT02431221PHASE3WITHDRAWNEfficacy, Safety, and Tolerability of Perhexiline in Subjects With Hypertrophic Cardiomyopathy and Heart Failure
NCT03470545PHASE3COMPLETEDClinical Study to Evaluate Mavacamten (MYK-461) in Adults With Symptomatic Obstructive Hypertrophic Cardiomyopathy
NCT05174416PHASE3COMPLETEDA Study to Evaluate the Efficacy and Safety of Mavacamten in Chinese Adults With Symptomatic Obstructive HCM
NCT05182658PHASE3ACTIVE_NOT_RECRUITINGEmpagliflozin in Hypertrophic Cardiomyopathy
NCT05186818PHASE3COMPLETEDPhase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Placebo in Adults With Symptomatic oHCM
NCT05767346PHASE3COMPLETEDPhase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Metoprolol Succinate in Adults With Symptomatic oHCM
NCT06116968PHASE3COMPLETEDAn Open-Label Study of Aficamten for Chinese Patients With Symptomatic oHCM
NCT06873828PHASE3NOT_YET_RECRUITINGEvaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter MonitoringEvaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter Monitoring
NCT07021976PHASE3RECRUITINGA Phase III Trial of HRS-1893 in Patients With Obstructive Hypertrophic Cardiomyopathy
NCT07023341PHASE3ACTIVE_NOT_RECRUITINGA Study to Learn More About How Well Aficamten Works in Japanese Participants With Symptomatic Obstructive Hypertrophic Cardiomyopathy
NCT07202897PHASE3NOT_YET_RECRUITINGLA-HCM Study : Rivaroxaban for Antithrombotic Prevention in Hypertrophic Cardiomyopathy Patients With Abnormal Left Atrial Strain.
NCT00368355PHASE2COMPLETEDT Cell Depletion for Recipients of HLA Haploidentical Related Donor Stem Cell Grafts
NCT00001631PHASE2COMPLETEDStudy of Blood Flow in Heart Muscle
NCT00001894PHASE2COMPLETEDA Comparison of Two Treatments: Pacemaker and Percutaneous Transluminal Septal Ablation for Hypertrophic Cardiomyopathy
NCT00001960PHASE2COMPLETEDStudying the Effectiveness of Pacemaker Therapy in Children Who Have Thickened Heart Muscle
NCT00011076PHASE2COMPLETEDPirfenidone to Treat Hypertrophic Cardiomyopathy
NCT00035386PHASE2COMPLETEDAlcohol Septal Ablation in Obstructive Hypertrophic Cardiomyopathy: A Pilot Study
NCT00430833PHASE2UNKNOWNCHANCE - Candesartan in Hypertrophic Cardiomyopathy
NCT00500552PHASE2COMPLETEDPerhexiline Therapy in Patients With Hypertrophic Cardiomyopathy
NCT01150461PHASE2COMPLETEDEffect of Losartan in Patients With Nonobstructive Hypertrophic Cardiomyopathy
NCT01230918PHASE2TERMINATEDStudy to Develop a Non-invasive Marker for Monitoring Myocardial Fibrosis
NCT01447654PHASE2COMPLETEDInhibition of the Renin Angiotensin System With Losartan in Patients With Hypertrophic Cardiomyopathy
NCT01696370PHASE2UNKNOWNTrimetazidine Therapy in Hypertrophic Cardiomyopathy
NCT01912534PHASE2COMPLETEDValsartan for Attenuating Disease Evolution In Early Sarcomeric HCM
NCT02590809PHASE2COMPLETEDHypertrophic Cardiomyopathy Symptom Release by BX1514M
NCT03496168PHASE2COMPLETEDExtension Study of Mavacamten (MYK-461) in Adults With Symptomatic Obstructive Hypertrophic Cardiomyopathy Previously Enrolled in PIONEER
NCT03532802PHASE2COMPLETEDThe Effect of Metoprolol in Patients With Hypertrophic Obstructive Cardiomyopathy.
NCT03832660PHASE2COMPLETEDSacubitril/Valsartan vs Lifestyle in Hypertrophic Cardiomyopathy
NCT04219826PHASE2COMPLETEDDose-finding Study to Evaluate the Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of CK-3773274 in Adults With Hypertrophic Cardiomyopathy