FILIP1L

gene
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Also known as DOC-1GIP130

Summary

FILIP1L (filamin A interacting protein 1 like, HGNC:24589) is a protein-coding gene on chromosome 3q12.1, encoding Filamin A-interacting protein 1-like (Q4L180). Acts as a regulator of the antiangiogenic activity on endothelial cells.

Predicted to be involved in protein localization to actin cytoskeleton. Predicted to act upstream of or within several processes, including hindgut development; proteasomal protein catabolic process; and protein secretion. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be active in actin cytoskeleton and centrosome.

Source: NCBI Gene 11259 — RefSeq curated summary.

At a glance

  • GWAS associations: 11
  • Clinical variants (ClinVar): 11 total
  • MANE Select transcript: NM_001387850

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:24589
Approved symbolFILIP1L
Namefilamin A interacting protein 1 like
Location3q12.1
Locus typegene with protein product
StatusApproved
AliasesDOC-1, GIP130
Ensembl geneENSG00000168386
Ensembl biotypeprotein_coding
OMIM612993
Entrez11259

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 8 protein_coding, 2 protein_coding_CDS_not_defined

ENST00000331335, ENST00000354552, ENST00000383694, ENST00000398326, ENST00000468533, ENST00000471562, ENST00000476723, ENST00000477258, ENST00000487087, ENST00000495625

RefSeq mRNA: 8 — MANE Select: NM_001387850 NM_001042459, NM_001282793, NM_001282794, NM_001370247, NM_001387850, NM_001387852, NM_014890, NM_182909

CCDS: CCDS43117, CCDS43118, CCDS43119, CCDS63700, CCDS74969, CCDS93331

Canonical transcript exons

ENST00000477258 — 6 exons

ExonStartEnd
ENSE000018223559982881199830605
ENSE000022553509993076999931030
ENSE000022733239992985699930029
ENSE000022924719992423099924408
ENSE000035196509984829599851070
ENSE00003920901100114053100114501

Expression profiles

Bgee: expression breadth ubiquitous, 269 present calls, max score 99.48.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 38.9712 / max 6072.6070, expressed in 1572 samples.

FANTOM5 promoters (13 alternative TSS)

Promoter IDTPM avgSamples expressed
4347324.71511544
434745.8787661
434723.6736796
434603.0016288
434800.334630
434630.291084
434590.241274
434810.238531
434620.227163
434610.204662

Top tissues by expression

287 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
saphenous veinUBERON:000731899.48gold quality
cauda epididymisUBERON:000436099.19gold quality
blood vessel layerUBERON:000479798.76gold quality
vena cavaUBERON:000408798.68gold quality
urethraUBERON:000005798.59gold quality
descending thoracic aortaUBERON:000234598.36gold quality
superficial temporal arteryUBERON:000161498.27gold quality
thoracic aortaUBERON:000151598.06gold quality
ascending aortaUBERON:000149698.00gold quality
right coronary arteryUBERON:000162597.99gold quality
aortaUBERON:000094797.67gold quality
popliteal arteryUBERON:000225097.38gold quality
tibial arteryUBERON:000761097.36gold quality
hindlimb stylopod muscleUBERON:000425297.08gold quality
gall bladderUBERON:000211096.99gold quality
colonic epitheliumUBERON:000039796.53gold quality
triceps brachiiUBERON:000150996.22gold quality
calcaneal tendonUBERON:000370196.22gold quality
left coronary arteryUBERON:000162696.12gold quality
coronary arteryUBERON:000162196.04gold quality
biceps brachiiUBERON:000150795.84gold quality
spermCL:000001995.83gold quality
lower esophagus muscularis layerUBERON:003583395.73gold quality
diaphragmUBERON:000110395.70gold quality
lower esophagusUBERON:001347395.66gold quality
gluteal muscleUBERON:000200095.59gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450295.59gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451195.49gold quality
smooth muscle tissueUBERON:000113595.43gold quality
mucosa of stomachUBERON:000119995.43gold quality

Single-cell (SCXA)

Detected in 9 experiment(s), a significant marker in 8.

ExperimentMarker?Max mean expression
E-GEOD-135922yes29.76
E-CURD-46yes24.42
E-MTAB-8410yes19.86
E-CURD-112yes13.28
E-MTAB-10553yes7.13
E-HCAD-9yes5.18
E-GEOD-130148yes4.84
E-MTAB-6678no3.73
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): CREB1

miRNA regulators (miRDB)

47 targeting FILIP1L, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3646100.0073.565283
HSA-MIR-548AW99.9972.573559
HSA-MIR-1185-1-3P99.9871.042593
HSA-MIR-1185-2-3P99.9871.042593
HSA-LET-7F-2-3P99.9870.982588
HSA-MIR-3688-3P99.9772.022834
HSA-MIR-452599.9464.38675
HSA-MIR-5010-5P99.9464.11705
HSA-MIR-381-3P99.9371.872854
HSA-MIR-30099.9271.762856
HSA-MIR-7-1-3P99.9171.534384
HSA-MIR-7-2-3P99.9171.404394
HSA-MIR-449599.8272.083080
HSA-MIR-1255A99.7468.09744
HSA-MIR-1255B-5P99.7468.16741
HSA-MIR-4699-3P99.7170.153142
HSA-MIR-452-5P99.6569.631762
HSA-MIR-4676-3P99.6569.311733
HSA-MIR-892C-3P99.6569.381745
HSA-MIR-58799.6470.862611
HSA-MIR-1249-5P99.6166.552049
HSA-MIR-6797-5P99.6166.552084
HSA-MIR-3942-3P99.5769.032854
HSA-MIR-360999.5269.892587
HSA-MIR-548AH-5P99.5269.732626
HSA-MIR-186-3P99.5166.241685
HSA-MIR-317199.4969.06776
HSA-MIR-127599.4767.902749
HSA-MIR-806499.4566.92875
HSA-MIR-6882-5P99.3571.131206

Literature-anchored findings (GeneRIF, showing 12)

  • DOC1 might play a role in mediating some of the effects of EMAP-II on endothelial cells (PMID:15935955)
  • these findings suggest that downregulation of FILIP1L associated with DNA methylation is related with the invasive phenotype in ovarian cancer and that modulation of FILIP1L expression has the potential to be a target for ovarian cancer therapy. (PMID:21693594)
  • a novel function for FILIP-1L and a pathway for Hsf1 degradation through the ubiquitin-proteasome system. (PMID:21784850)
  • GPBP directs myofibril formation through interaction with intracellular downstream effector 130-kDa GPBP-interacting protein (PMID:21832087)
  • In addition, eight genes classified as ‘second tier’ hits in the original study (PAX7, THADA, COL8A1/FILIP1L, DCAF4L2, GADD45G, NTN1, RBFOX3 and FOXE1) showed evidence of linkage and association in this replication sample. (PMID:23512105)
  • these findings suggest that FILIP1L reduces beta-catenin levels, which may lead to the transcriptional downregulation of WNT target genes such as MMPs, resulting in inhibition of metastasis (PMID:24327474)
  • down-regulation of FILIP1L associated with DNA methylation is related with the invasive phenotype in various cancers. (PMID:24340050)
  • FILIP1L inhibits progression in colorectal cancer by inhibiting tumor cell proliferation and angiogenesis. (PMID:27750216)
  • Studies have shown that FILIP1L expression is related with inhibition of metastases and chemoresistance of ovarian neoplasm, which is associated with downregulation of EMT through beta-catenin degradation. FILIP1L expression correlates with significantly improved overall survival. (PMID:27776341)
  • FILIP1L Loss Is a Driver of Aggressive Mucinous Colorectal Adenocarcinoma and Mediates Cytokinesis Defects through PFDN1. (PMID:34417201)
  • FILIP1L-mediated cell apoptosis, epithelial-mesenchymal transition and extracellular matrix synthesis aggravate posterior capsular opacification. (PMID:34666037)
  • Long-chain noncoding RNA LINC01569 upregulates filamin A-interacting protein 1-like to prevent metastasis of triple-negative breast cancer via sponging miR-300. (PMID:37955081)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
mus_musculusFilip1lENSMUSG00000043336
rattus_norvegicusFilip1lENSRNOG00000001645
caenorhabditis_elegansWBGENE00016792

Paralogs (3): FILIP1 (ENSG00000118407), CTTNBP2NL (ENSG00000143079), LUZP1 (ENSG00000169641)

Protein

Protein identifiers

Filamin A-interacting protein 1-likeQ4L180 (reviewed: Q4L180)

Alternative names: 130 kDa GPBP-interacting protein, 90 kDa GPBP-interacting protein, Protein down-regulated in ovarian cancer 1

All UniProt accessions (3): Q4L180, C9JYJ6, H7C4M0

UniProt curated annotations — full annotation on UniProt →

Function. Acts as a regulator of the antiangiogenic activity on endothelial cells. When overexpressed in endothelial cells, leads to inhibition of cell proliferation and migration and an increase in apoptosis. Inhibits melanoma growth When expressed in tumor-associated vasculature.

Subcellular location. Cytoplasm. Membrane. Nucleus.

Tissue specificity. Expressed in endothelial cells, colon and colon cancers. In the colon, expressed in the vasculature and muscularis mucosa. In colon cancer, strongly expressed in tumor stroma and the vasculature (at protein level). Expressed in ovarian epithelial cells. Down-regulated in ovarian cancer.

Induction. Up-regulated in endothelial cells with the angiogenesis inhibitors endostatin and fumagillin. By endothelial monocyte-activating polypeptide II in endothelial cells.

Similarity. Belongs to the FILIP1 family.

Isoforms (7)

UniProt IDNamesCanonical?
Q4L180-11, a, dyes
Q4L180-22, b, c
Q4L180-33
Q4L180-44
Q4L180-55
Q4L180-66
Q4L180-77

RefSeq proteins (8): NP_001035924, NP_001269722, NP_001269723, NP_001357176, NP_001374779, NP_001374781, NP_055705, NP_878913 (=MANE)

Domains & families (InterPro)

IDNameType
IPR019131Cortactin-binding_p2_NDomain
IPR050719Cortactin-Actin_RegFamily

Pfam: PF09727

UniProt features (22 total): splice variant 7, sequence conflict 5, modified residue 4, sequence variant 2, chain 1, region of interest 1, coiled-coil region 1, compositionally biased region 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q4L180-F168.640.39

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (4): 791, 986, 994, 1052

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 264 (showing top): MODULE_52, GOBP_PROTEIN_LOCALIZATION_TO_CYTOSKELETON, HERNANDEZ_ABERRANT_MITOSIS_BY_DOCETACEL_2NM_UP, RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP, FOSTER_TOLERANT_MACROPHAGE_UP, MAINA_VHL_TARGETS_UP, INGRAM_SHH_TARGETS_UP, RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN, MODULE_99, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN, GENTILE_UV_HIGH_DOSE_DN, COATES_MACROPHAGE_M1_VS_M2_UP, WANG_CISPLATIN_RESPONSE_AND_XPC_DN, GOBP_PROTEIN_LOCALIZATION_TO_ORGANELLE

GO Biological Process (1): protein localization to actin cytoskeleton (GO:1903119)

GO Molecular Function (1): protein binding (GO:0005515)

GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), actin cytoskeleton (GO:0015629), membrane (GO:0016020)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure2
protein localization to cytoskeleton1
binding1
intracellular membrane-bounded organelle1
intracellular anatomical structure1
cytoskeleton1

Protein interactions and networks

STRING

1239 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
FILIP1LSLC16A8O95907668
FILIP1LRAD51BO15315607
FILIP1LB3GLCTQ6Y288581
FILIP1LADAMTS9Q9P2N4566
FILIP1LERVW-1Q9UQF0550
FILIP1LCOL8A1P27658505
FILIP1LH3BT92H3BT92472
FILIP1LIER3P46695459
FILIP1LFLNCQ14315448
FILIP1LDDR1Q08345443
FILIP1LTGFBR1P36897439
FILIP1LCMSS1Q9BQ75435
FILIP1LHMCN1Q96RW7416
FILIP1LSIRAL2Q9NWS6406
FILIP1LFRKP42685401

IntAct

8 interactions, top by confidence:

ABTypeScore
FILIP1LPDIA3psi-mi:“MI:0915”(physical association)0.400
FILIP1LPCNApsi-mi:“MI:0915”(physical association)0.370
BVLF1VWA8psi-mi:“MI:0914”(association)0.350
SOX4SEC16Apsi-mi:“MI:2364”(proximity)0.270
SP7IGF2BP3psi-mi:“MI:2364”(proximity)0.270
FILIP1LnusBpsi-mi:“MI:0915”(physical association)0.000
FILIP1LgrpEpsi-mi:“MI:0915”(physical association)0.000

BioGRID (21): FILIP1L (Affinity Capture-MS), FILIP1L (Affinity Capture-RNA), SMTN (Two-hybrid), FILIP1L (Two-hybrid), FILIP1L (Proximity Label-MS), FILIP1L (Proximity Label-MS), FILIP1L (Proximity Label-MS), FILIP1L (Proximity Label-MS), FILIP1L (Affinity Capture-MS), FILIP1L (Affinity Capture-MS), FILIP1L (Proximity Label-MS), FILIP1L (Cross-Linking-MS (XL-MS)), FILIP1L (Cross-Linking-MS (XL-MS)), SMC1A (Cross-Linking-MS (XL-MS)), FILIP1L (Cross-Linking-MS (XL-MS))

ESM2 similar proteins: A0MZ66, A0MZ67, A6PWD2, A7MD70, B3DLE8, B9EKI3, F7DP49, O35550, O35551, O45420, P82094, Q05D60, Q08DR9, Q15276, Q28IH8, Q3KR99, Q3UIJ9, Q4L180, Q4R7H3, Q4V7C8, Q53EZ4, Q5BIX7, Q5R923, Q5RA03, Q5RI56, Q5U3Z6, Q6NRC9, Q6NRW2, Q6P0R8, Q6P402, Q6P6L0, Q7YS99, Q7Z7B0, Q861Q8, Q8BT07, Q8BVC4, Q8K2Q9, Q8K3K8, Q8K4T4, Q8R5M4

Diamond homologs: A0M8S4, A0M8T5, A1X157, B9EJA2, Q00PJ1, Q07DV1, Q07DW4, Q07DX4, Q07DY4, Q07DZ5, Q07E15, Q07E28, Q07E41, Q09YG9, Q09YI1, Q09YJ3, Q09YK4, Q09YM8, Q108T9, Q2IBA2, Q2IBB2, Q2IBD4, Q2IBE6, Q2IBF7, Q2IBF8, Q2QL82, Q2QLA2, Q2QLB3, Q2QLF8, Q2QLG9, Q4L180, Q5RDH2, Q6P6L0, Q8SX68, Q8WZ74, Q99LJ0, Q9P2B4, A3KNA5, Q7Z7B0, Q8K4T4

SIGNOR signaling

1 interactions.

AEffectBMechanism
FILIP1L“down-regulates quantity by destabilization”FLNCbinding

Disease & clinical

Clinical variants and AI predictions

ClinVar

11 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance11
Likely benign0
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

4860 predictions. Top by Δscore:

VariantEffectΔscore
3:100051302:GAGTA:Gdonor_gain1.0000
3:100051304:GTA:Gdonor_gain1.0000
3:99986345:CAT:Cacceptor_gain1.0000
3:99986347:T:TCacceptor_gain1.0000
3:100003230:CA:Cacceptor_gain0.9900
3:100003231:A:Cacceptor_gain0.9900
3:100004501:GAT:Gdonor_gain0.9900
3:100010130:GGTAA:Gacceptor_gain0.9900
3:100011374:T:TAdonor_gain0.9900
3:100011375:A:AAdonor_gain0.9900
3:100019783:GGA:Gdonor_gain0.9900
3:100019784:GAG:Gdonor_gain0.9900
3:100019786:G:GGdonor_gain0.9900
3:100033382:G:GTdonor_gain0.9900
3:100051305:T:TAdonor_gain0.9900
3:100051306:A:AAdonor_gain0.9900
3:100109212:A:AGacceptor_gain0.9900
3:99836675:A:Gdonor_gain0.9900
3:99841060:G:GGdonor_gain0.9900
3:99851067:TAAT:Tacceptor_gain0.9900
3:99851068:AATC:Aacceptor_loss0.9900
3:99851069:ATCT:Aacceptor_loss0.9900
3:99851070:TC:Tacceptor_loss0.9900
3:99851071:C:CCacceptor_gain0.9900
3:99851071:C:Tacceptor_loss0.9900
3:99851072:T:Gacceptor_loss0.9900
3:99876375:GGAA:Gdonor_gain0.9900
3:99878677:GGC:Gdonor_gain0.9900
3:99882237:C:Adonor_gain0.9900
3:99924405:CCAA:Cacceptor_gain0.9900

AlphaMissense

7899 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
3:99848485:A:GI1064T0.998
3:99848491:A:GI1062T0.998
3:99848926:A:TL917H0.998
3:99848965:A:GI904T0.998
3:99848965:A:TI904K0.998
3:99848833:A:GI948T0.997
3:99848839:A:GI946T0.997
3:99848926:A:GL917P0.997
3:99848491:A:CI1062S0.996
3:99848833:A:TI948N0.996
3:99848932:G:TA915D0.996
3:99848959:A:TV906D0.996
3:99848485:A:CI1064S0.995
3:99848485:A:TI1064N0.995
3:99848920:A:GI919T0.995
3:99848833:A:CI948S0.994
3:99848920:A:CI919S0.994
3:99848965:A:CI904R0.994
3:99849376:A:GL767P0.994
3:99848880:A:CS932R0.993
3:99848880:A:TS932R0.993
3:99848882:T:GS932R0.993
3:99848349:G:CS1109R0.992
3:99848349:G:TS1109R0.992
3:99848351:T:GS1109R0.992
3:99848839:A:TI946K0.991
3:99848959:A:GV906A0.991
3:99850198:A:GL493P0.991
3:99850972:A:GL235P0.991
3:99848491:A:TI1062N0.990

dbSNP variants (sampled 300 via entrez): RS1000004816 (3:99904708 A>G), RS1000048422 (3:100027567 C>T), RS1000049619 (3:99833364 C>T), RS1000053667 (3:99889444 A>C), RS1000054268 (3:99890725 G>A,T), RS1000075081 (3:100093441 T>A,C), RS1000098534 (3:99944169 C>T), RS1000108258 (3:99882293 T>C), RS1000112198 (3:99988877 T>G), RS1000115249 (3:99897848 T>G), RS1000129984 (3:99944413 C>A,T), RS1000136078 (3:99853285 A>G), RS1000144746 (3:100080095 T>C), RS1000149869 (3:99833887 T>A), RS1000150773 (3:100007368 A>G)

Disease associations

OMIM: gene MIM:612993 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

11 associations (top):

StudyTraitp-value
GCST001884_18Age-related macular degeneration4.000000e-13
GCST002115_7Axial length5.000000e-11
GCST004988_436Breast cancer5.000000e-10
GCST009462_49Optic disc size2.000000e-08
GCST010002_434Refractive error5.000000e-25
GCST012228_65Waist-hip index3.000000e-08
GCST012228_67Waist-hip index3.000000e-10
GCST012230_264Waist-to-hip ratio adjusted for BMI4.000000e-08
GCST012230_265Waist-to-hip ratio adjusted for BMI5.000000e-08
GCST012230_267Waist-to-hip ratio adjusted for BMI5.000000e-10
GCST012231_187A body shape index1.000000e-08

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0005318axial length measurement
EFO:0007788BMI-adjusted waist-hip ratio
EFO:0007789BMI-adjusted waist circumference

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

78 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Estradiolaffects cotreatment, decreases expression, increases expression6
Tetrachlorodibenzodioxinaffects cotreatment, decreases expression, affects expression4
Valproic Acidincreases expression, affects expression, decreases expression4
sodium arsenitedecreases expression3
Air Pollutantsaffects cotreatment, increases abundance, increases expression, decreases expression3
Cadmium Chloridedecreases expression, increases abundance, increases expression3
Particulate Matterincreases abundance, decreases expression3
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, decreases expression2
Acetaminophendecreases expression, increases expression2
Benzo(a)pyreneincreases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Tretinoinincreases expression2
Cyclosporinedecreases expression2
ethylbenzeneincreases expression1
methylmercuric chlorideincreases expression1
methyleugenolincreases expression1
alpha-pineneincreases abundance, affects cotreatment, increases expression1
bisphenol Adecreases expression1
sodium arsenatedecreases expression, increases abundance1
tris(2-butoxyethyl) phosphateaffects expression1
beta-lapachonedecreases expression1
arseniteaffects expression1
perfluorooctanoic acidincreases expression1
manganese chlorideincreases abundance, increases expression1
2-xyleneincreases expression1
benzo(e)pyreneincreases methylation1
2,3-bis(3’-hydroxybenzyl)butyrolactonedecreases expression, affects cotreatment1
aflatoxin B2increases methylation1
nickel sulfatedecreases expression1
methacrylaldehydeaffects cotreatment, increases expression, increases abundance1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): age-related macular degeneration