FKBP6
gene geneOn this page
Also known as PPIaseFKBP36
Summary
FKBP6 (FKBP prolyl isomerase family member 6 (inactive), HGNC:3722) is a protein-coding gene on chromosome 7q11.23, encoding Inactive peptidyl-prolyl cis-trans isomerase FKBP6 (O75344). Has an essential role in spermatogenesis.
The protein encoded by this gene is a cis-trans peptidyl-prolyl isomerase that may function in immunoregulation and basic cellular processes involving protein folding and trafficking. This gene is located in a chromosomal region that is deleted in Williams-Beuren syndrome. Defects in this gene may cause male infertility. There are multiple pseudogenes for this gene located nearby on chromosome 7. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 8468 — RefSeq curated summary.
At a glance
- Gene–disease (curated): spermatogenic failure 77 (Strong, GenCC)
- Clinical variants (ClinVar): 53 total — 3 pathogenic, 3 likely-pathogenic
- MANE Select transcript:
NM_003602
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3722 |
| Approved symbol | FKBP6 |
| Name | FKBP prolyl isomerase family member 6 (inactive) |
| Location | 7q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PPIase, FKBP36 |
| Ensembl gene | ENSG00000077800 |
| Ensembl biotype | protein_coding |
| OMIM | 604839 |
| Entrez | 8468 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 4 protein_coding, 3 nonsense_mediated_decay, 1 retained_intron
ENST00000252037, ENST00000413573, ENST00000429879, ENST00000431982, ENST00000437013, ENST00000442793, ENST00000445032, ENST00000648538
RefSeq mRNA: 4 — MANE Select: NM_003602
NM_001135211, NM_001281304, NM_001362789, NM_003602
CCDS: CCDS43595, CCDS47604, CCDS64670
Canonical transcript exons
ENST00000252037 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001709106 | 73328161 | 73328485 |
| ENSE00001789798 | 73358181 | 73358625 |
| ENSE00002464127 | 73329360 | 73329449 |
| ENSE00002488357 | 73328575 | 73328692 |
| ENSE00003480137 | 73330150 | 73330352 |
| ENSE00003584836 | 73331657 | 73331776 |
| ENSE00003614977 | 73342807 | 73342899 |
| ENSE00003621661 | 73340638 | 73340832 |
| ENSE00003791155 | 73341273 | 73341382 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 94.47.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0378 / max 42.4020, expressed in 4 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79007 | 0.0248 | 4 |
| 79006 | 0.0130 | 3 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 94.47 | gold quality |
| right testis | UBERON:0004534 | 94.37 | gold quality |
| testis | UBERON:0000473 | 91.77 | gold quality |
| sperm | CL:0000019 | 87.32 | gold quality |
| male germ cell | CL:0000015 | 87.31 | gold quality |
| oocyte | CL:0000023 | 87.14 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.61 | gold quality |
| type B pancreatic cell | CL:0000169 | 85.03 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.67 | gold quality |
| secondary oocyte | CL:0000655 | 83.52 | gold quality |
| olfactory bulb | UBERON:0002264 | 81.51 | gold quality |
| diaphragm | UBERON:0001103 | 81.16 | gold quality |
| adult organism | UBERON:0007023 | 80.53 | gold quality |
| vena cava | UBERON:0004087 | 78.52 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 73.55 | gold quality |
| body of tongue | UBERON:0011876 | 72.78 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 72.71 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 72.06 | gold quality |
| myocardium | UBERON:0002349 | 71.97 | gold quality |
| tongue | UBERON:0001723 | 71.74 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 71.39 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 71.37 | gold quality |
| cardia of stomach | UBERON:0001162 | 71.29 | gold quality |
| ventral tegmental area | UBERON:0002691 | 70.94 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 70.91 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 70.85 | gold quality |
| nipple | UBERON:0002030 | 70.55 | gold quality |
| pericardium | UBERON:0002407 | 70.47 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 70.44 | gold quality |
| saphenous vein | UBERON:0007318 | 70.31 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.35 |
| E-GEOD-110499 | no | 24.17 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
20 targeting FKBP6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-6887-3P | 99.66 | 67.83 | 1778 |
| HSA-MIR-671-5P | 99.52 | 67.11 | 1277 |
| HSA-MIR-4519 | 99.48 | 66.10 | 859 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-3675-3P | 99.09 | 67.70 | 968 |
| HSA-MIR-5088-3P | 98.29 | 66.63 | 1310 |
| HSA-MIR-6826-3P | 98.19 | 66.32 | 1153 |
| HSA-MIR-211-3P | 98.14 | 66.77 | 1052 |
| HSA-MIR-216B-5P | 97.16 | 66.76 | 1126 |
| HSA-MIR-1243 | 97.07 | 65.44 | 719 |
| HSA-MIR-6795-3P | 91.86 | 63.00 | 218 |
Literature-anchored findings (GeneRIF, showing 6)
- 278A polymorphism of FKBP6 gene was associated with idiopathic azoospermia, while C/T, 370G/A, 430G/C, 467T/C, 468G/A polymorphisms might be very rare in Chinese population. (PMID:15696470)
- may play a role in modifying the susceptibility to idiopathic spermatogenic impairment in human; allele A of c.216C>A seems to be a protective factor for the development of male infertility (PMID:17307919)
- clathrin-FKBP36-Hsp72 complexes resulting from both identified interactions are bound to the matrices of clathrin-coated vesicles in spermatocytes, which indicates a possible role of FKBP36 and Hsp72 in the disassembly of clathrin coats (PMID:18529014)
- FKBP36 diminishes GAPDH activity by direct interaction and down-regulation of GAPDH (PMID:19001379)
- Genome wide DNA methylation assessment approach identified novel biomarkers that differentiate between cervical cancer and normal samples. In the Validation cohort FKBP6 promoter methylation had 73% sensitivity and 80% specificity (AUC = 0.80). (PMID:24241165)
- The piRNA-pathway factor FKBP6 is essential for spermatogenesis but dispensable for control of meiotic LINE-1 expression in humans. (PMID:36150389)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fkbp6 | ENSDARG00000030133 |
| ENSDARG00000102022 | ||
| mus_musculus | Fkbp6 | ENSMUSG00000040013 |
| rattus_norvegicus | Fkbp6 | ENSRNOG00000001451 |
| drosophila_melanogaster | shu | FBGN0003401 |
| caenorhabditis_elegans | WBGENE00001429 | |
| caenorhabditis_elegans | fkb-5 | WBGENE00001430 |
Paralogs (18): FKBP4 (ENSG00000004478), FKBP7 (ENSG00000079150), FKBP1A (ENSG00000088832), FKBP5 (ENSG00000096060), FKBP3 (ENSG00000100442), FKBP8 (ENSG00000105701), FKBP14 (ENSG00000106080), FKBP15 (ENSG00000119321), FKBP1B (ENSG00000119782), FKBP9 (ENSG00000122642), TTC9 (ENSG00000133985), FKBP11 (ENSG00000134285), FKBP10 (ENSG00000141756), TTC9C (ENSG00000162222), FKBP2 (ENSG00000173486), TTC9B (ENSG00000174521), FKBP1C (ENSG00000198225), FKBPL (ENSG00000204315)
Protein
Protein identifiers
Inactive peptidyl-prolyl cis-trans isomerase FKBP6 — O75344 (reviewed: O75344)
Alternative names: 36 kDa FK506-binding protein, FK506-binding protein 6, Immunophilin FKBP36
All UniProt accessions (5): O75344, A0A3B3IST2, C9JM01, F8WD36, F8WD38
UniProt curated annotations — full annotation on UniProt →
Function. Has an essential role in spermatogenesis. It is required to repress transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Acts as a co-chaperone via its interaction with HSP90 and is required for the piRNA amplification process, the secondary piRNA biogenesis. May be required together with HSP90 in removal of 16 nucleotide ping-pong by-products from Piwi complexes, possibly facilitating turnover of Piwi complexes.
Subunit / interactions. Interacts (via TPR repeats) with HSP90. Interacts with HSP72/HSPA2 and CLTC. Interacts with GAPDH; leading to inhibit GAPDH catalytic activity.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Detected in all tissues examined, with higher expression in testis, heart, skeletal muscle, liver, and kidney.
Disease relevance. FKBP6 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of FKBP6 may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease. A father and son with Williams-Beuren syndrome appear to have a common heterozygous deletion that includes FKBP6 gene. However, the haploinsufficiency for FKBP6 does not appear to preclude male fertility. Spermatogenic failure 77 (SPGF77) [MIM:620103] An autosomal recessive male infertility disorder characterized by oligozoospermia or azoospermia, and abnormally shaped spermatozoa in the semen of affected individuals. Sperm abnormalities include double and triple tails, with amorphous or fragmented and enlarged heads, as well as pinhead sperm. Testicular tissue shows arrest at the round spermatid stage. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the FKBP6 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75344-1 | 1 | yes |
| O75344-2 | 2 | |
| O75344-3 | 3 |
RefSeq proteins (4): NP_001128683, NP_001268233, NP_001349718, NP_003593* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001179 | PPIase_FKBP_dom | Domain |
| IPR011990 | TPR-like_helical_dom_sf | Homologous_superfamily |
| IPR019734 | TPR_rpt | Repeat |
| IPR042282 | FKBP6/shu | Family |
| IPR046357 | PPIase_dom_sf | Homologous_superfamily |
Pfam: PF00254
UniProt features (25 total): strand 6, sequence conflict 3, helix 3, turn 3, repeat 3, sequence variant 3, splice variant 2, chain 1, domain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3B7X | X-RAY DIFFRACTION | 2.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75344-F1 | 91.11 | 0.80 |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1221632 | Meiotic synapsis |
| R-HSA-5601884 | PIWI-interacting RNA (piRNA) biogenesis |
MSigDB gene sets: 545 (showing top):
YAGI_AML_WITH_INV_16_TRANSLOCATION, REACTOME_MEIOTIC_SYNAPSIS, GOBP_POSITIVE_REGULATION_OF_VIRAL_GENOME_REPLICATION, GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_GENE_EXPRESSION_EPIGENETIC, GOBP_DNA_METHYLATION_DEPENDENT_CONSTITUTIVE_HETEROCHROMATIN_FORMATION, GOBP_PROTEIN_MATURATION, MODULE_379, GOBP_VIRAL_GENOME_REPLICATION, GOBP_VIRAL_LIFE_CYCLE, GOBP_PROTEIN_FOLDING, GOBP_PIRNA_PROCESSING, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, chr7q11, MODULE_242
GO Biological Process (8): protein folding (GO:0006457), spermatogenesis (GO:0007283), cell differentiation (GO:0030154), regulatory ncRNA-mediated gene silencing (GO:0031047), piRNA processing (GO:0034587), positive regulation of viral genome replication (GO:0045070), meiotic cell cycle (GO:0051321), transposable element silencing by piRNA-mediated DNA methylation (GO:0141196)
GO Molecular Function (6): FK506 binding (GO:0005528), identical protein binding (GO:0042802), Hsp90 protein binding (GO:0051879), peptidyl-prolyl cis-trans isomerase activity (GO:0003755), protein binding (GO:0005515), isomerase activity (GO:0016853)
GO Cellular Component (7): synaptonemal complex (GO:0000795), fibrillar center (GO:0001650), cytoplasm (GO:0005737), cytosol (GO:0005829), microtubule cytoskeleton (GO:0015630), intercellular bridge (GO:0045171), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Meiosis | 1 |
| Gene Silencing by RNA | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cellular process | 1 |
| protein maturation | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| cellular developmental process | 1 |
| negative regulation of gene expression | 1 |
| regulatory ncRNA processing | 1 |
| viral genome replication | 1 |
| regulation of viral genome replication | 1 |
| positive regulation of viral process | 1 |
| cell cycle | 1 |
| sexual reproduction | 1 |
| reproductive process | 1 |
| meiotic nuclear division | 1 |
| transposable element silencing by heterochromatin formation | 1 |
| gene silencing by piRNA-directed DNA methylation | 1 |
| macrolide binding | 1 |
| protein binding | 1 |
| heat shock protein binding | 1 |
| cis-trans isomerase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| synaptonemal structure | 1 |
| nucleolus | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cytoskeleton | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2036 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FKBP6 | GTF2IRD1 | Q9UHL9 | 836 |
| FKBP6 | PPIL4 | Q8WUA2 | 826 |
| FKBP6 | TBL2 | Q9Y4P3 | 798 |
| FKBP6 | FZD9 | O00144 | 797 |
| FKBP6 | TRIM50 | Q86XT4 | 778 |
| FKBP6 | PPIB | P23284 | 751 |
| FKBP6 | GTF2I | P78347 | 748 |
| FKBP6 | CLIP2 | Q9UDT6 | 734 |
| FKBP6 | PPIF | P30405 | 731 |
| FKBP6 | BAZ1B | Q9UIG0 | 709 |
| FKBP6 | NSUN5 | Q96P11 | 708 |
| FKBP6 | EIF4H | Q15056 | 670 |
| FKBP6 | LIMK1 | P53667 | 643 |
| FKBP6 | BCL7B | Q9BQE9 | 626 |
| FKBP6 | ELN | P15502 | 614 |
IntAct
170 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDK5RAP3 | FKBP6 | psi-mi:“MI:0915”(physical association) | 0.860 |
| FKBP6 | CDK5RAP3 | psi-mi:“MI:0915”(physical association) | 0.860 |
| FKBP6 | IHO1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| IHO1 | FKBP6 | psi-mi:“MI:0915”(physical association) | 0.830 |
| LZTS2 | FKBP6 | psi-mi:“MI:0915”(physical association) | 0.780 |
| FKBP6 | LZTS2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SUMO1P1 | FKBP6 | psi-mi:“MI:0915”(physical association) | 0.720 |
| FKBP6 | SUMO1P1 | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (137): CDK5RAP3 (Two-hybrid), LZTS2 (Two-hybrid), CCDC36 (Two-hybrid), SUMO1P1 (Two-hybrid), FKBP6 (Two-hybrid), FKBP6 (Affinity Capture-Western), FKBP6 (Biochemical Activity), IK (Affinity Capture-MS), HSP90AA5P (Affinity Capture-MS), CDC37L1 (Affinity Capture-MS), RGPD5 (Affinity Capture-MS), PPP1R12B (Affinity Capture-MS), PPP1R12A (Affinity Capture-MS), OSBP (Affinity Capture-MS), PRMT3 (Affinity Capture-MS)
ESM2 similar proteins: A2ADA5, A4PCD4, A6H611, D3ZDM7, F6PHZ6, O75344, P04053, P09838, P17256, P36195, P47823, P55345, Q01992, Q03426, Q08602, Q0V8R7, Q13144, Q1L8I0, Q3MIT2, Q4KM92, Q4QQT0, Q5CZL1, Q5E9Z1, Q5I0L3, Q5M7T9, Q5M934, Q5RFE6, Q5XGM5, Q64350, Q6GQ53, Q7L3T8, Q80W22, Q86YJ6, Q8BYL4, Q8C0D0, Q8CHW4, Q8N0Z8, Q8WWH5, Q91XW8, Q92089
Diamond homologs: A6QQ71, D3ZQF4, F6PHZ6, O42123, O42993, O46638, O54998, O75344, O94746, P0A0W2, P0A0W3, P0C1J3, P0C1J4, P0C1J5, P0C1J6, P0CP94, P0CP95, P0CP96, P0CP97, P18203, P20080, P20081, P26883, P26884, P26885, P27124, P28870, P30416, P30417, P32472, P44760, P45523, P45878, P48375, P54397, P56989, P57599, P62942, P62943, P65764
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
53 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 3 |
| Uncertain significance | 39 |
| Likely benign | 5 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1684032 | NM_003602.5(FKBP6):c.589-2A>G | Pathogenic |
| 1684033 | NM_003602.5(FKBP6):c.508_529dup (p.Phe177fs) | Pathogenic |
| 2574694 | GRCh37/hg19 7q11.23(chr7:72664461-74162586) | Pathogenic |
| 1683495 | NM_003602.5(FKBP6):c.610C>T (p.Arg204Ter) | Likely pathogenic |
| 1684034 | NM_003602.5(FKBP6):c.832C>T (p.Arg278Ter) | Likely pathogenic |
| 1684035 | NM_003602.5(FKBP6):c.469-2A>T | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
2109 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:73328637:G:C | K40N | 0.995 |
| 7:73328637:G:T | K40N | 0.995 |
| 7:73331721:G:A | G178D | 0.995 |
| 7:73329398:T:C | F72L | 0.994 |
| 7:73329400:C:A | F72L | 0.994 |
| 7:73329400:C:G | F72L | 0.994 |
| 7:73330206:G:C | A108P | 0.994 |
| 7:73330282:T:A | V133D | 0.994 |
| 7:73329372:G:A | G63E | 0.992 |
| 7:73330213:T:C | F110S | 0.991 |
| 7:73340723:T:C | L225P | 0.991 |
| 7:73330164:G:C | G94R | 0.990 |
| 7:73331712:G:C | R175P | 0.990 |
| 7:73331757:C:A | A190D | 0.990 |
| 7:73331756:G:C | A190P | 0.989 |
| 7:73340828:G:A | G260E | 0.989 |
| 7:73341273:G:C | A262P | 0.989 |
| 7:73341324:G:C | A279P | 0.989 |
| 7:73330180:T:A | L99H | 0.988 |
| 7:73330287:T:C | F135L | 0.988 |
| 7:73330289:T:A | F135L | 0.988 |
| 7:73330289:T:G | F135L | 0.988 |
| 7:73331721:G:T | G178V | 0.988 |
| 7:73330165:G:A | G94D | 0.987 |
| 7:73330176:G:C | G98R | 0.987 |
| 7:73330234:C:A | A117D | 0.987 |
| 7:73331720:G:C | G178R | 0.987 |
| 7:73341325:C:A | A279D | 0.987 |
| 7:73330180:T:C | L99P | 0.986 |
| 7:73330285:T:C | L134P | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000207035 (7:73339813 A>G), RS1000207468 (7:73351903 T>C), RS1000372015 (7:73333077 G>C), RS1000487636 (7:73353776 C>T), RS1000585122 (7:73348335 G>A,C), RS1000814370 (7:73341766 C>T), RS1000881856 (7:73340209 T>C), RS1000931893 (7:73341451 C>A,G), RS1001640889 (7:73348137 A>T), RS1001973024 (7:73349893 T>C), RS1002131335 (7:73356470 C>A,T), RS1002196053 (7:73354994 C>G), RS1002201960 (7:73343148 T>G), RS1002382971 (7:73335954 C>A,T), RS1002483867 (7:73356770 C>T)
Disease associations
OMIM: gene MIM:604839 | disease phenotypes: MIM:620103, MIM:609757
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure 77 | Strong | Autosomal recessive |
Mondo (3): male infertility (MONDO:0005372), spermatogenic failure 77 (MONDO:0031083), 7q11.23 microduplication syndrome (MONDO:0012342)
Orphanet (1): 7q11.23 microduplication syndrome (Orphanet:96121)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007248 | Infertility, Male | C12.100.500.430; C12.100.750.700; C12.200.294.430 |
| C565723 | Williams-Beuren Region Duplication Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, decreases methylation, increases expression | 2 |
| testosterone undecanoate | affects cotreatment, increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| abrine | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Levonorgestrel | affects cotreatment, increases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Clinical trials (associated diseases)
125 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02202382 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Male Infertility |
| NCT02204826 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Semen Parameters in Male Infertility Patients: a Randomized, Placebo-controlled, Double-blind Clinical Study |
| NCT03802864 | PHASE4 | COMPLETED | Post-operative Pain Control of Testicular Sperm Extraction Using Liposomal Bupivacaine |
| NCT06100432 | PHASE4 | ACTIVE_NOT_RECRUITING | Effect of Eurycoma Longifolia (DLBS5055) and Multivitamins (Vitamin C+Vitamin E+ β-carotene) for Infertile Males |
| NCT07523022 | PHASE4 | ENROLLING_BY_INVITATION | Comparison of the Effect of Gonadotropin and Clomiphene Citrate Treatment on Sperm Parameters and the Outcome of Assisted Reproductive Procedures in Subfertile Men Based on the APHRODITE Groups |
| NCT00975117 | PHASE3 | COMPLETED | Spermotrend in the Treatment of Male Infertility |
| NCT01407432 | PHASE3 | COMPLETED | Impact of Folates in the Care of the Male Infertility |
| NCT01895816 | PHASE3 | COMPLETED | Herbal Tonic Fertile Supplement(ZO2C5) |
| NCT02605070 | PHASE3 | TERMINATED | Pilot Study on the Effects of FSH Treatment on the Epigenetic Characteristics of Spermatozoa in Infertile Patients With Severe Oligozoospermia |
| NCT07402759 | PHASE3 | ACTIVE_NOT_RECRUITING | Impact of tdrd9 Gene Mutations in the Therapeutic Response to L-carnitine in Oligoasthenozoospermic Men |
| NCT01880086 | PHASE2 | COMPLETED | Clomiphene Citrate for the Treatment of Low Testosterone Associated With Chronic Opioid Pain Medication Administration |
| NCT02061384 | PHASE2 | COMPLETED | RA-2 13-cis Retinoic Acid (Isotretinoin) |
| NCT02421887 | PHASE2 | COMPLETED | Males, Antioxidants, and Infertility Trial |
| NCT05200663 | PHASE2 | UNKNOWN | Efficacy Comparison of Tamoxifen and Tamoxifen With Antioxidants on Semen Quality of Male With Idiopathic Infertility |
| NCT05290558 | PHASE2 | ACTIVE_NOT_RECRUITING | The Therapeutic Effects of Bu Shen Yi Jing Pill on Semen Quality in Sub Fertile Males: a Randomized Controlled Trial |
| NCT06091969 | PHASE2 | NOT_YET_RECRUITING | Supplementation for Male Subfertility |
| NCT01595308 | PHASE1 | COMPLETED | A Pilot Study to Evaluate the Effect of Pomegranate Juice on Semen Parameters in Healthy Male Volunteers |
| NCT02122211 | PHASE1 | COMPLETED | Choline Dehydrogenase and Sperm Function: Effects of Betaine |
| NCT02575924 | PHASE1 | UNKNOWN | Influence of Culture Media on Clinical Outcomes in Poor Responders or Severe Male Infertility |
| NCT01304927 | PHASE2/PHASE3 | COMPLETED | Vitamin D Supplementation and Male Infertility: The CBG-study a Randomized Clinical Trial |
| NCT02349945 | PHASE2/PHASE3 | COMPLETED | FSH Receptor Polymorphism p.N680S and Efficacy of FSH Therapy |
| NCT05222841 | PHASE2/PHASE3 | COMPLETED | The Effectiveness of Spermotrend Food Supplement in the Treatment of Male Infertility |
| NCT05616598 | PHASE2/PHASE3 | COMPLETED | Effect of New Oral Treatment for Hepatitis C Virus on Seminal Parameters |
| NCT02025270 | PHASE1/PHASE2 | COMPLETED | MSCs For Treatment of Azoospermic Patients |
| NCT04541459 | EARLY_PHASE1 | UNKNOWN | Validation of New Devices Against Ambient Electromagnetic Radiation |
| NCT05792813 | EARLY_PHASE1 | UNKNOWN | Efficacy and Safety of Linggui Yangyuan Paste in Patients With Male Infertility |
| NCT06188936 | EARLY_PHASE1 | COMPLETED | Home Semen Analysis Tests As a Screening Tool for Fertility Patients |
| NCT00012480 | Not specified | COMPLETED | Effect of Environmental Exposures on the Egg Fertilizing Ability of Human Sperm |
| NCT00044369 | Not specified | COMPLETED | Role of the Toxic Metal Cadmium in the Mechanism Producing Infertility With a Varicocele |
| NCT00119925 | Not specified | UNKNOWN | ‘SPRING’-Study: Subfertility Guidelines: Patient Related Implementation in the Netherlands Among Gynaecologists |
| NCT00178516 | Not specified | COMPLETED | Vitamin E and Male Infertility |
| NCT00315029 | Not specified | COMPLETED | Patient-Centered Implementation Trial for Single Embryo Transfer |
| NCT00341120 | Not specified | COMPLETED | Genetic Causes of Male Infertility |
| NCT00481403 | Not specified | COMPLETED | Study of Sperm Molecular Factors Implicated in Male Fertility |
| NCT00548977 | Not specified | COMPLETED | Genetic Studies Spermatogenic Failure |
| NCT00596739 | Not specified | COMPLETED | A Study of the Pre- and Post-operative Semen Analyses and Reproductive Hormone Levels of Men Undergoing Weight-reduction Surgery |
| NCT00756561 | Not specified | COMPLETED | HOP-2A - Intratesticular Hormone Levels |
| NCT00961558 | Not specified | TERMINATED | Canadian Varicocelectomy Initiative (CVI): Effects on Male Fertility and Testicular Function of Varicocelectomy |
| NCT01075334 | Not specified | UNKNOWN | Is a Carnitine Based Food Supplement (PorimoreTM) for Infertile Men Superior to Folate and Zinc With Regard to Pregnancy Rates in Intrauterine Insemination Cycles? |
| NCT01178463 | Not specified | UNKNOWN | Spermatogonial Stem Cells in Azoospermic Patients: a Comparison Between Obstructive and Non-obstructive Azoospermia |
Related Atlas pages
- Associated diseases: spermatogenic failure 77
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): 7q11.23 microduplication syndrome, spermatogenic failure 77