FKRP
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Also known as LGMD2IMDC1CFKTR
Summary
FKRP (fukutin related protein, HGNC:17997) is a protein-coding gene on chromosome 19q13.32, encoding Ribitol 5-phosphate transferase FKRP (Q9H9S5). Catalyzes the transfer of a ribitol 5-phosphate from CDP-L-ribitol to the ribitol 5-phosphate previously attached by FKTN/fukutin to the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-6-)mannose), a carbohydrate struct….
This gene encodes a protein which is targeted to the medial Golgi apparatus and is necessary for posttranslational modification of dystroglycan. Mutations in this gene have been associated with congenital muscular dystrophy, cognitive disability, and cerebellar cysts. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.
Source: NCBI Gene 79147 — RefSeq curated summary.
At a glance
- Gene–disease (curated): myopathy caused by variation in FKRP (Definitive, ClinGen) — +9 more curated relationships
- Clinical variants (ClinVar): 1,250 total — 87 pathogenic, 87 likely-pathogenic
- Phenotypes (HPO): 201
- MANE Select transcript:
NM_024301
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17997 |
| Approved symbol | FKRP |
| Name | fukutin related protein |
| Location | 19q13.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LGMD2I, MDC1C, FKTR |
| Ensembl gene | ENSG00000181027 |
| Ensembl biotype | protein_coding |
| OMIM | 606596 |
| Entrez | 79147 |
Gene structure
Transcript identifiers
Ensembl transcripts: 41 — 33 protein_coding, 7 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000318584, ENST00000391909, ENST00000593800, ENST00000593875, ENST00000593877, ENST00000593902, ENST00000593995, ENST00000594467, ENST00000595570, ENST00000595868, ENST00000596460, ENST00000596974, ENST00000597313, ENST00000597339, ENST00000597403, ENST00000598271, ENST00000600005, ENST00000600227, ENST00000600629, ENST00000600646, ENST00000600681, ENST00000600834, ENST00000600872, ENST00000600977, ENST00000601299, ENST00000602181, ENST00000602250, ENST00000908841, ENST00000908842, ENST00000908843, ENST00000908844, ENST00000908845, ENST00000908846, ENST00000929288, ENST00000929289, ENST00000929290, ENST00000929291, ENST00000962124, ENST00000962125, ENST00000962126, ENST00000962127
RefSeq mRNA: 2 — MANE Select: NM_024301
NM_001039885, NM_024301
CCDS: CCDS12691
Canonical transcript exons
ENST00000318584 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001219421 | 46748515 | 46748665 |
| ENSE00001219430 | 46748027 | 46748088 |
| ENSE00003016176 | 46755412 | 46758575 |
| ENSE00003169980 | 46746057 | 46746090 |
Expression profiles
Bgee: expression breadth ubiquitous, 230 present calls, max score 91.41.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.9318 / max 54.2742, expressed in 1773 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 176602 | 7.9318 | 1773 |
Top tissues by expression
262 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ventricle myocardium | UBERON:0006566 | 91.41 | silver quality |
| cardiac muscle of right atrium | UBERON:0003379 | 90.69 | silver quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.63 | gold quality |
| sural nerve | UBERON:0015488 | 86.69 | gold quality |
| apex of heart | UBERON:0002098 | 86.67 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.48 | gold quality |
| muscle of leg | UBERON:0001383 | 86.18 | gold quality |
| left uterine tube | UBERON:0001303 | 85.70 | gold quality |
| adenohypophysis | UBERON:0002196 | 85.41 | gold quality |
| heart left ventricle | UBERON:0002084 | 85.27 | gold quality |
| right coronary artery | UBERON:0001625 | 85.09 | gold quality |
| cardiac ventricle | UBERON:0002082 | 85.09 | gold quality |
| pituitary gland | UBERON:0000007 | 85.07 | gold quality |
| stromal cell of endometrium | CL:0002255 | 85.01 | gold quality |
| tibialis anterior | UBERON:0001385 | 84.87 | silver quality |
| popliteal artery | UBERON:0002250 | 84.45 | gold quality |
| tibial artery | UBERON:0007610 | 84.45 | gold quality |
| granulocyte | CL:0000094 | 84.36 | gold quality |
| cardiac atrium | UBERON:0002081 | 84.29 | gold quality |
| body of uterus | UBERON:0009853 | 84.16 | gold quality |
| right atrium auricular region | UBERON:0006631 | 84.05 | gold quality |
| left coronary artery | UBERON:0001626 | 84.04 | gold quality |
| heart | UBERON:0000948 | 83.97 | gold quality |
| metanephros cortex | UBERON:0010533 | 83.81 | gold quality |
| lower esophagus | UBERON:0013473 | 83.78 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 83.78 | gold quality |
| coronary artery | UBERON:0001621 | 83.76 | gold quality |
| left ovary | UBERON:0002119 | 83.76 | gold quality |
| aorta | UBERON:0000947 | 83.75 | gold quality |
| right ovary | UBERON:0002118 | 83.55 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.25 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
44 targeting FKRP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-4694-3P | 99.79 | 69.53 | 2640 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-1296-3P | 99.72 | 64.04 | 636 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-892C-5P | 99.16 | 70.56 | 2116 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-2276-3P | 98.76 | 67.75 | 1384 |
| HSA-MIR-423-5P | 98.69 | 67.48 | 1522 |
| HSA-MIR-31-5P | 98.58 | 68.35 | 1239 |
| HSA-MIR-3184-5P | 98.56 | 67.13 | 1491 |
Literature-anchored findings (GeneRIF, showing 40)
- Limb girdle muscular dystrophy 2I is a milder allelic variant of MDC1C. (PMID:11741828)
- FKRP mutations can result in muscular dystrophy with mental retardation & cerebellar cysts, adding structural brain defects to the FKRP mutation spectrum. Depletion of alpha-dystroglycan expression suggests FKRP involvement in its processing. (PMID:12654965)
- patients with mutations in the fukutin-related protein (FKPR) gene had congenital muscular dystrophy (PMID:12666124)
- particular FKRP mutations in the homozygous state induce structural and clinical neurological lesions in addition to muscular dystrophy (PMID:14652796)
- Data suggest that fukutin and fukutin-related protein (FKRP) may be involved at different steps in O-mannosylglycan synthesis of alpha-dystroglycan, and FKRP is most likely involved in the initial step in this synthesis. (PMID:15213246)
- pathogenesis of congenital muscular dystrophies, severity is related to ability to transport protein to ER (PMID:15574464)
- a type of LGMD in the Hutterite population maps to chromosome 19q31-q33 and is due to homozygosity for the L276I mutation in FKRP. (PMID:15580560)
- Three siblings without clinical signs of muscle dystrophy, but with dilated cardiomyopathy have C826A Fukutin-related protein mutation. (PMID:15833432)
- A FKRP point mutation, L276I has been found in all patients with LGMD2I studied so far. The authors screened for this mutation in 102 sporadic cases of Duchenne/Becker mutation-negative patients and found 13 patients with LGMD2I. (PMID:15883334)
- Retention in the endoplasmic reticulum of FKRP is not the main mechanism of disease; this may instead relate to a disruption of the functional activity of this putative enzyme with its substrate(s) in the Golgi. (PMID:16055117)
- FKRP mutations are a frequent cause of limb-girdle muscular dystrophies. The degree of respiratory and cardiac insufficiency in patients did not correlate with the severity of muscle involvement. (PMID:16344347)
- A novel FKRP gene((c.823C>T (p.R275C) and c.948delC)mutation in a Taiwanese patient with limb-girdle muscular dystrophy 2I (PMID:17055682)
- We report a limb-girdle muscular dystrophy 2I family with three affected sisters and a highly variable clinical course. FKRP gene sequencing showed that all three sisters carried a nonsense paternal mutation (W225X). (PMID:17113772)
- two unrelated Mexican children with congenital muscular dystrophy who each have the identical, novel 1387A>G, N463D mutation. (PMID:17336067)
- 3 new FKRP mutations were identified: L322V, L489R and R275G. (PMID:17351538)
- Limb-girdle muscular dystrophy (LGMD) type 2I, caused by mutations in the fukutin-related protein gene (FKRP). (PMID:17446099)
- The unfolded protein response is activated in LGMD2I muscle biopsies in limb girdle muscular dystrophy type 2I. (PMID:17952692)
- severe dilated cardiomyopathy requiring heart transplantation in a homozygous p.Leu276Ile mutation in Fukutin-related protein gene (FKRP) (PMID:18060779)
- findings detected a homozygous mutation of the FKRP gene (826C>A) in two unrelated patients with limb-girdle muscular dystrophy 2I with necrotic myopathy with numerous rimmed vacuoles (PMID:18593008)
- In our population of LGMD2I patients, different mutations in the FKRP gene are associated with several secondary muscle protein reductions, and the deficiencies of alpha2-laminin and alpha-DG on sections are prevalent. (PMID:18645206)
- Data show that four sibs belonging to a second Tunisian LGMD2I family show variable cardiac involvement with FKRP gene mutations. (PMID:18671187)
- our study confirms that typical clinical symptoms (calf hypertrophy, cardiac involvement, mild LGMD) of LGMD2I due the homozygous c.826C[A mutation, are rather frequent in Germany (PMID:19820980)
- Alteration of the secretion pathway by different mutations may contribute to wide variations in phenotypes associated with FKRP-related diseases such as muscular dystrophy. (PMID:19900540)
- mutation spectrum associted with limb-girdle muscular dystrophy variability and serverity (PMID:19917824)
- Co-injection of fish or human FKRP mRNA along with the morpholino restored normal development and alpha-dystroglycan glycosylation. (PMID:19955119)
- two siblings carrying a homozygous mutation in the start codon of FKRP that is likely to result in a loss of functional FKRP protein. The clinical phenotype of the patients was consistent with Walker-Warburg syndrome (PMID:20236121)
- This study identified FKRP mutations on both alleles in 88 patients from 69 families with Limb Girdle Muscular Dystrophy Type 2I. (PMID:20961759)
- Study revealed a large homozygous block at the LGMD2I locus, and direct sequencing of FKRP encoding fukutin-related-protein detected the common homozygous c.826 C>A (p.Leu276Ile) mutation. (PMID:21172462)
- Two novel heterozygous mutations (c.208T>A and c.1030G>T) in the FKRP gene were identified in Chinese brothers with progressive shoulder and pelvic muscle weakness (PMID:21296577)
- Mutations in FKRP lead to a glycosylation defect and subsequently downregulation of alpha-dystroglycan which constitutes an essential component of the proteoglycan-dystrophin complex. (PMID:21311896)
- FKRP co-localises with the middle-to-trans-Golgi marker MG160, between the myofibrils in human rectus femoris muscle fibres. (PMID:21886772)
- This study demonistrated that the higher frequency of LGMD2I with cardiomyopathy in mutation of FKRP in Taiwanese patients. (PMID:23800702)
- This provide a new mouse model of Limb-Girdle Muscular Dystrophy Type 2I homozygous for the Common L276I Mutation. (PMID:26574668)
- Muscular dystrophies can present with rhabdomyolysis; FKRP mutations are particularly frequent in causing such complication. (PMID:26810512)
- Fukutin and fukutin-related protein are sequentially acting Rbo5P transferases that use cytidine diphosphate ribitol. (PMID:26923585)
- The 13 novel mutations of FKRP significantly expanded the mutation spectrum of MDC1C and LGMD2I, and the different founder mutations indicate the ethnic difference in FKRP mutations. (PMID:27439679)
- Dystrophic Pathology in Diaphragm and Impairment of Cardiac Function in FKRP P448L Mutant Mice (PMID:27711214)
- This study have demonstrated that the clinical heterogeneity in LGMD2I patients, homozygous for FKRP c.826C>A, cannot be explained by histopathological alterations, levels of alpha-DG hypoglycosylation or laminin alpha2 depletion. (PMID:28479227)
- Next generation and Sanger sequencing were performed for I-2. Heterozygous FKRP mutations were identified in exon 4: c.1167_1168delGC, p.Gly391Leufs *72 and c.501_502GT>CC, p.Arg167Ser, p.Cys168Arg (PMID:28629604)
- This literature review revealed that pathogenic mutations in the FKRP gene in Asian LGMD2I patients are compound heterozygous rather than homozygous. (PMID:28931339)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fkrp | ENSDARG00000100467 |
| mus_musculus | Fkrp | ENSMUSG00000048920 |
| rattus_norvegicus | Fkrp | ENSRNOG00000016055 |
| drosophila_melanogaster | CG15651 | FBGN0034567 |
Protein
Protein identifiers
Ribitol 5-phosphate transferase FKRP — Q9H9S5 (reviewed: Q9H9S5)
Alternative names: Fukutin-related protein, Ribitol-5-phosphate transferase
All UniProt accessions (17): Q9H9S5, M0QX03, M0QXT8, M0QYR2, M0QYV4, M0QYV8, M0QZ46, M0QZ68, M0R005, M0R016, M0R092, M0R0G0, M0R112, M0R1M1, M0R274, M0R2U3, M0R342
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the transfer of a ribitol 5-phosphate from CDP-L-ribitol to the ribitol 5-phosphate previously attached by FKTN/fukutin to the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-6-)mannose), a carbohydrate structure present in alpha-dystroglycan (DAG1). This constitutes the second step in the formation of the ribose 5-phosphate tandem repeat which links the phosphorylated O-mannosyl trisaccharide to the ligand binding moiety composed of repeats of 3-xylosyl-alpha-1,3-glucuronic acid-beta-1.
Subunit / interactions. Homodimer; disulfide-linked. Tetramer. Forms a complex composed of FKRP, FKTN/fukutin, and RXYLT1/TMEM5. Also exists as large multimeric protein complexes. May interact with the dystrophin-glycoprotein complex (DGC).
Subcellular location. Golgi apparatus membrane. Secreted. Cell membrane. Sarcolemma. Rough endoplasmic reticulum. Cytoplasm.
Tissue specificity. Expressed in the retina (at protein level). Expressed predominantly in skeletal muscle, placenta, and heart and relatively weakly in brain, lung, liver, kidney, and pancreas.
Post-translational modifications. N-glycosylated.
Disease relevance. Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A5 (MDDGA5) [MIM:613153] An autosomal recessive disorder characterized by congenital muscular dystrophy associated with cobblestone lissencephaly and other brain anomalies, eye malformations, profound intellectual disability, and death usually in the first years of life. Included diseases are the more severe Walker-Warburg syndrome and the slightly less severe muscle-eye-brain disease. The disease is caused by variants affecting the gene represented in this entry. Muscular dystrophy-dystroglycanopathy congenital with or without impaired intellectual development B5 (MDDGB5) [MIM:606612] A congenital muscular dystrophy characterized by a severe phenotype with inability to walk, muscle hypertrophy, marked elevation of serum creatine kinase, secondary deficiency of laminin alpha2, and a marked reduction in alpha-dystroglycan expression. Only a subset of affected individuals have brain involvements. The disease is caused by variants affecting the gene represented in this entry. Muscular dystrophy-dystroglycanopathy limb-girdle C5 (MDDGC5) [MIM:607155] An autosomal recessive degenerative myopathy with age of onset ranging from childhood to adult life, and variable severity. Clinical features include proximal muscle weakness, waddling gait, calf hypertrophy, cardiomyopathy and respiratory insufficiency. A reduction of alpha-dystroglycan and laminin alpha-2 expression can be observed on skeletal muscle biopsy from MDDGC5 patients. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein glycosylation.
Similarity. Belongs to the LicD transferase family.
RefSeq proteins (2): NP_001034974, NP_077277* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007074 | LicD/FKTN/FKRP_NTP_transf | Domain |
| IPR052613 | LicD_transferase | Family |
| IPR055105 | FKRP_N | Domain |
Pfam: PF04991, PF22921
Catalyzed reactions (Rhea), 1 shown:
- 3-O-[Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-(O-6-P-alpha-D-Man)]-Thr-[protein] + CDP-L-ribitol = 3-O-[Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-(O-6-P-alpha-D-Man)]-Thr-[protein] + CMP + H(+) (RHEA:39867)
UniProt features (101 total): sequence variant 34, strand 23, helix 15, binding site 12, mutagenesis site 5, turn 3, topological domain 2, glycosylation site 2, disulfide bond 2, chain 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6KAK | X-RAY DIFFRACTION | 2.06 |
| 6KAJ | X-RAY DIFFRACTION | 2.22 |
| 6L7U | X-RAY DIFFRACTION | 2.24 |
| 6KAN | X-RAY DIFFRACTION | 2.25 |
| 6L7S | X-RAY DIFFRACTION | 2.41 |
| 6L7T | X-RAY DIFFRACTION | 2.41 |
| 6KAM | X-RAY DIFFRACTION | 2.46 |
| 6KAL | X-RAY DIFFRACTION | 2.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H9S5-F1 | 94.08 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 352; 359–364; 360; 362; 364; 437–438; 480–482; 289; 296; 317; 318; 345
Disulfide bonds (2): 6, 168–191
Glycosylation sites (2): 172, 209
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 88 | affects the tetramer assembly. decreases the ribitol-5-phosphate transferase activity of about 80%. |
| 360 | does not affect protein expression. loss of ribitol-5-phosphate transferase activity. |
| 362 | decrease in ribitol-5-phosphate transferase activity. does not affect protein expression. loss of ribitol-5-phosphate tr |
| 364 | does not affect protein expression. loss of ribitol-5-phosphate transferase activity. |
| 416 | does not affect protein expression. loss of ribitol-5-phosphate transferase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9939291 | Matriglycan biosynthesis on DAG1 |
MSigDB gene sets: 552 (showing top):
GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, GOBP_RESPIRATORY_GASEOUS_EXCHANGE_BY_RESPIRATORY_SYSTEM, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_SKELETAL_MUSCLE_TISSUE_REGENERATION, GOBP_BEHAVIOR, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_CORTICOSTEROID, GOBP_ADULT_BEHAVIOR, GOBP_POLYOL_METABOLIC_PROCESS, GOBP_GROWTH, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, AREB6_01, GOBP_RESPIRATORY_SYSTEM_PROCESS
GO Biological Process (51): in utero embryonic development (GO:0001701), neuron migration (GO:0001764), heart morphogenesis (GO:0003007), respiratory system process (GO:0003016), glycolytic process (GO:0006096), creatine metabolic process (GO:0006600), lipid metabolic process (GO:0006629), muscle contraction (GO:0006936), inflammatory response (GO:0006954), brain development (GO:0007420), adult walking behavior (GO:0007628), response to xenobiotic stimulus (GO:0009410), glial cell differentiation (GO:0010001), response to activity (GO:0014823), protein processing (GO:0016485), protein import (GO:0017038), pentose metabolic process (GO:0019321), pentitol metabolic process (GO:0019519), bone mineralization (GO:0030282), protein O-linked glycosylation via mannose (GO:0035269), maintenance of protein localization in endoplasmic reticulum (GO:0035437), filtration diaphragm assembly (GO:0036058), reelin-mediated signaling pathway (GO:0038026), camera-type eye development (GO:0043010), skeletal muscle tissue regeneration (GO:0043403), phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0043491), neuromuscular process (GO:0050905), protein tetramerization (GO:0051262), response to glucocorticoid (GO:0051384), localization of cell (GO:0051674), diaphragm development (GO:0060539), connective tissue development (GO:0061448), basement membrane organization (GO:0071711), oxygen metabolic process (GO:0072592), response to alcohol (GO:0097305), connective tissue replacement (GO:0097709), skeletal muscle fiber differentiation (GO:0098528), eye development (GO:0001654), obsolete protein glycosylation (GO:0006486), central nervous system development (GO:0007417)
GO Molecular Function (7): dystroglycan binding (GO:0002162), phosphotransferase activity, for other substituted phosphate groups (GO:0016780), identical protein binding (GO:0042802), laminin binding (GO:0043236), metal ion binding (GO:0046872), protein binding (GO:0005515), transferase activity (GO:0016740)
GO Cellular Component (13): Golgi membrane (GO:0000139), obsolete extracellular space (GO:0005615), nucleoplasm (GO:0005654), rough endoplasmic reticulum (GO:0005791), Golgi apparatus (GO:0005794), cytosol (GO:0005829), sarcolemma (GO:0042383), skeletal muscle myofibril (GO:0098723), extracellular region (GO:0005576), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| DAG1 glycosylations | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| protein binding | 3 |
| cytoplasm | 3 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| chordate embryonic development | 1 |
| cell migration | 1 |
| generation of neurons | 1 |
| heart development | 1 |
| animal organ morphogenesis | 1 |
| system process | 1 |
| respiratory gaseous exchange by respiratory system | 1 |
| phosphoglycerate kinase activity | 1 |
| phosphoglycerate mutase activity | 1 |
| phosphopyruvate hydratase activity | 1 |
| pyruvate kinase activity | 1 |
| pyruvate metabolic process | 1 |
| generation of precursor metabolites and energy | 1 |
| aerobic respiration | 1 |
| carbohydrate catabolic process | 1 |
| pyridine nucleotide catabolic process | 1 |
| glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (phosphorylating) activity | 1 |
| ADP catabolic process | 1 |
| ATP metabolic process | 1 |
| nicotinamide nucleotide metabolic process | 1 |
| modified amino acid metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| primary metabolic process | 1 |
| muscle system process | 1 |
| defense response | 1 |
| central nervous system development | 1 |
| animal organ development | 1 |
| head development | 1 |
| adult locomotory behavior | 1 |
| walking behavior | 1 |
| response to chemical | 1 |
| cell differentiation | 1 |
| gliogenesis | 1 |
| response to stimulus | 1 |
| proteolysis | 1 |
Protein interactions and networks
STRING
1280 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FKRP | FKTN | O75072 | 988 |
| FKRP | POMT2 | Q9UKY4 | 986 |
| FKRP | POMGNT1 | Q8WZA1 | 986 |
| FKRP | POMT1 | Q9Y6A1 | 986 |
| FKRP | DAG1 | Q14118 | 978 |
| FKRP | RXYLT1 | Q9Y2B1 | 920 |
| FKRP | LAMA2 | P24043 | 912 |
| FKRP | SGCA | Q16586 | 868 |
| FKRP | SGCG | Q13326 | 867 |
| FKRP | SGCB | Q16585 | 866 |
| FKRP | LARGE1 | O95461 | 864 |
| FKRP | DYSF | O75923 | 863 |
| FKRP | POMGNT2 | Q8NAT1 | 862 |
| FKRP | CAPN3 | P20807 | 859 |
| FKRP | ANO5 | Q75V66 | 852 |
| FKRP | TRIM32 | Q13049 | 852 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RXYLT1 | FKTN | psi-mi:“MI:0915”(physical association) | 0.710 |
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| ASPH | STXBP3 | psi-mi:“MI:0914”(association) | 0.640 |
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| FKRP | FKRP | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| SLC7A1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC9A6 | MAP1LC3B2 | psi-mi:“MI:0914”(association) | 0.530 |
| CD1B | TOR1B | psi-mi:“MI:0914”(association) | 0.530 |
| SLC39A9 | B4GALT5 | psi-mi:“MI:0914”(association) | 0.530 |
| ASGR2 | MT-CO1 | psi-mi:“MI:0914”(association) | 0.530 |
| LHFPL4 | IFNA17 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC39A4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| HLA-DPA1 | TYW5 | psi-mi:“MI:0914”(association) | 0.530 |
| CSGALNACT2 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| B4GAT1 | ADCY6 | psi-mi:“MI:0914”(association) | 0.530 |
| RHOT2 | UBC | psi-mi:“MI:0914”(association) | 0.530 |
| ELANE | ITIH2 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC9A6 | IFNGR1 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| SLC7A1 | STXBP3 | psi-mi:“MI:0914”(association) | 0.530 |
| UNC93B1 | GPR89A | psi-mi:“MI:0914”(association) | 0.530 |
| FKRP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (71): FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS), FKRP (Affinity Capture-MS)
ESM2 similar proteins: A2WX64, A2X933, A2XFT5, A2XFT6, A2XVC2, A2YH25, A2ZF66, A2ZHL0, A2ZI32, A2ZI41, B9FCV3, B9FKP6, C7J0P3, P06024, P09758, P17471, P30816, P52377, Q08101, Q0D3C8, Q10MK2, Q16842, Q2QXM3, Q2QXP0, Q2QYF3, Q2R2W8, Q4ADV8, Q53JI9, Q5CAZ6, Q5Z8N6, Q69XK5, Q6P768, Q6Z3Y6, Q6Z5M3, Q6ZFH6, Q6ZI01, Q75BD5, Q7FA29, Q7XTB2, Q8CG64
Diamond homologs: O75072, P14184, Q1RGU4, Q4UND5, Q60HG0, Q68W49, Q8CG64, Q8R507, Q9H9S5, Q9ZCN4, Q9ZCN5
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FKRP | “form complex” | “Fukutin-FKRP-TMEM5 multienzyme complex” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 89 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| zinc ion transmembrane transport | 6 | 56.2× | 4e-07 |
| intracellular zinc ion homeostasis | 6 | 38.5× | 2e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1250 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 87 |
| Likely pathogenic | 87 |
| Uncertain significance | 495 |
| Likely benign | 431 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1071721 | NC_000019.9:g.(?47258698)(47260205_?)del | Pathogenic |
| 1071722 | NC_000019.9:g.(?_47255735)_47259271del | Pathogenic |
| 1072037 | NM_024301.5(FKRP):c.919del (p.Tyr307fs) | Pathogenic |
| 1072163 | NM_024301.5(FKRP):c.1A>C (p.Met1Leu) | Pathogenic |
| 1072170 | NM_024301.5(FKRP):c.947_948insA (p.Cys317fs) | Pathogenic |
| 1075782 | NM_024301.5(FKRP):c.661dup (p.Ser221fs) | Pathogenic |
| 1076575 | NM_024301.5(FKRP):c.979dup (p.Arg327fs) | Pathogenic |
| 120180 | NM_024301.5(FKRP):c.1A>G (p.Met1Val) | Pathogenic |
| 1322919 | NM_024301.5(FKRP):c.939G>A (p.Trp313Ter) | Pathogenic |
| 1358348 | NM_024301.5(FKRP):c.998_1015del (p.Leu333_Val338del) | Pathogenic |
| 1363219 | NM_024301.5(FKRP):c.650dup (p.Val218fs) | Pathogenic |
| 1376288 | NM_024301.5(FKRP):c.1075del (p.Trp359fs) | Pathogenic |
| 1378149 | NM_024301.5(FKRP):c.1354del (p.Leu452fs) | Pathogenic |
| 1395158 | NM_024301.5(FKRP):c.1187dup (p.Ala397fs) | Pathogenic |
| 1451632 | NM_024301.5(FKRP):c.224del (p.Pro75fs) | Pathogenic |
| 1452093 | NM_024301.5(FKRP):c.779_785del (p.Glu260fs) | Pathogenic |
| 1455089 | NM_024301.5(FKRP):c.151G>T (p.Val51Phe) | Pathogenic |
| 1459886 | NC_000019.9:g.(?47255735)(47259270_?)del | Pathogenic |
| 1487439 | NM_024301.5(FKRP):c.877A>G (p.Thr293Ala) | Pathogenic |
| 1929555 | NM_024301.5(FKRP):c.692G>A (p.Trp231Ter) | Pathogenic |
| 1953025 | NM_024301.5(FKRP):c.1100T>A (p.Ile367Asn) | Pathogenic |
| 1963124 | NM_024301.5(FKRP):c.985G>A (p.Val329Met) | Pathogenic |
| 2013620 | NM_024301.5(FKRP):c.142dup (p.Arg48fs) | Pathogenic |
| 2017901 | NM_024301.5(FKRP):c.722_791del (p.Ala241fs) | Pathogenic |
| 2017951 | NM_024301.5(FKRP):c.542_567del (p.Arg181fs) | Pathogenic |
| 2023163 | NM_024301.5(FKRP):c.897dup (p.Val300fs) | Pathogenic |
| 2044049 | NM_024301.5(FKRP):c.935G>C (p.Arg312Pro) | Pathogenic |
| 2124462 | NM_024301.5(FKRP):c.835dup (p.Trp279fs) | Pathogenic |
| 2138310 | NM_024301.5(FKRP):c.447_451del (p.Ala150fs) | Pathogenic |
| 2138311 | NM_024301.5(FKRP):c.947_948del (p.Pro316fs) | Pathogenic |
SpliceAI
893 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:46746087:GCGG:G | donor_gain | 1.0000 |
| 19:46746144:CTCA:C | donor_loss | 1.0000 |
| 19:46746145:TCA:T | donor_loss | 1.0000 |
| 19:46746146:CACCT:C | donor_loss | 1.0000 |
| 19:46746147:A:C | donor_loss | 1.0000 |
| 19:46755409:CAG:C | acceptor_loss | 1.0000 |
| 19:46755410:AG:A | acceptor_gain | 1.0000 |
| 19:46755411:GG:G | acceptor_gain | 1.0000 |
| 19:46755411:GGAT:G | acceptor_gain | 1.0000 |
| 19:46775743:GGTCG:G | acceptor_gain | 1.0000 |
| 19:46775745:TCG:T | acceptor_gain | 1.0000 |
| 19:46775746:CG:C | acceptor_gain | 1.0000 |
| 19:46775746:CGC:C | acceptor_gain | 1.0000 |
| 19:46775747:GC:G | acceptor_loss | 1.0000 |
| 19:46775748:C:CA | acceptor_loss | 1.0000 |
| 19:46775748:C:CC | acceptor_gain | 1.0000 |
| 19:46776968:CA:C | donor_gain | 1.0000 |
| 19:46776973:A:AC | donor_gain | 1.0000 |
| 19:46776973:AC:A | donor_loss | 1.0000 |
| 19:46776974:C:CA | donor_gain | 1.0000 |
| 19:46776974:CA:C | donor_gain | 1.0000 |
| 19:46776974:CACT:C | donor_gain | 1.0000 |
| 19:46776974:CACTA:C | donor_gain | 1.0000 |
| 19:46746090:GGTGA:G | donor_loss | 0.9900 |
| 19:46746091:G:A | donor_loss | 0.9900 |
| 19:46746092:T:A | donor_loss | 0.9900 |
| 19:46746147:A:AC | donor_gain | 0.9900 |
| 19:46746148:C:CC | donor_gain | 0.9900 |
| 19:46748633:GA:G | donor_gain | 0.9900 |
| 19:46748635:G:GG | donor_gain | 0.9900 |
AlphaMissense
3126 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:46756525:T:A | W359R | 0.999 |
| 19:46756525:T:C | W359R | 0.999 |
| 19:46756527:G:C | W359C | 0.999 |
| 19:46756527:G:T | W359C | 0.999 |
| 19:46756632:G:C | W394C | 0.999 |
| 19:46756632:G:T | W394C | 0.999 |
| 19:46755984:G:C | W178C | 0.998 |
| 19:46755984:G:T | W178C | 0.998 |
| 19:46756404:C:G | C318W | 0.998 |
| 19:46756475:T:A | L342H | 0.998 |
| 19:46756630:T:A | W394R | 0.998 |
| 19:46756630:T:C | W394R | 0.998 |
| 19:46756673:G:T | S408I | 0.998 |
| 19:46756683:C:A | N411K | 0.998 |
| 19:46756683:C:G | N411K | 0.998 |
| 19:46756708:T:C | F420L | 0.998 |
| 19:46756710:C:A | F420L | 0.998 |
| 19:46756710:C:G | F420L | 0.998 |
| 19:46756737:G:C | K429N | 0.998 |
| 19:46756737:G:T | K429N | 0.998 |
| 19:46756771:T:C | F441L | 0.998 |
| 19:46756772:T:C | F441S | 0.998 |
| 19:46756772:T:G | F441C | 0.998 |
| 19:46756773:T:A | F441L | 0.998 |
| 19:46756773:T:G | F441L | 0.998 |
| 19:46756835:C:A | P462H | 0.998 |
| 19:46756866:G:C | K472N | 0.998 |
| 19:46756866:G:T | K472N | 0.998 |
| 19:46756867:T:C | F473L | 0.998 |
| 19:46756869:C:A | F473L | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000011265 (19:46756955 C>T), RS1000125064 (19:46744016 C>T), RS1000326387 (19:46754091 C>G), RS1000676854 (19:46753784 G>A), RS1000823800 (19:46756189 C>A,G,T), RS1001045650 (19:46748238 C>T), RS1001848817 (19:46745911 A>C), RS1002042356 (19:46747089 G>A), RS1002046614 (19:46754556 C>G), RS1002221682 (19:46748180 T>A), RS1002593237 (19:46745870 C>T), RS1002620613 (19:46758673 G>A), RS1002796768 (19:46748534 G>A), RS1002884347 (19:46744690 C>G,T), RS1002958978 (19:46752005 A>G)
Disease associations
OMIM: gene MIM:606596 | disease phenotypes: MIM:236670, MIM:607155, MIM:606612, MIM:613153, MIM:253600, MIM:608634, MIM:618872, MIM:253800, MIM:615041
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive limb-girdle muscular dystrophy type 2I | Definitive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5 | Definitive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy type B5 | Definitive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy | Strong | Autosomal recessive |
| congenital muscular dystrophy with cerebellar involvement | Supportive | Autosomal recessive |
| congenital muscular dystrophy with intellectual disability | Supportive | Autosomal recessive |
| congenital muscular dystrophy without intellectual disability | Supportive | Autosomal recessive |
| muscle-eye-brain disease | Supportive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy, type A | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| myopathy caused by variation in FKRP | Definitive | AR |
Mondo (24): muscular dystrophy-dystroglycanopathy, type A (MONDO:0000171), autosomal recessive limb-girdle muscular dystrophy type 2I (MONDO:0011787), muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1 (MONDO:0009364), muscular dystrophy-dystroglycanopathy type B5 (MONDO:0011688), muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5 (MONDO:0013157), autosomal recessive limb-girdle muscular dystrophy (MONDO:0015152), cardiomyopathy (MONDO:0004994), dilated cardiomyopathy (MONDO:0005021), hypertrophic cardiomyopathy (MONDO:0005045), intellectual disability (MONDO:0001071), myopathy caused by variation in FKRP (MONDO:0700066), limb-girdle muscular dystrophy (MONDO:0016971), myopathy (MONDO:0005336), neuronopathy, distal hereditary motor, type 2B (MONDO:0012080), muscular dystrophy-dystroglycanopathy (MONDO:0018276)
Orphanet (14): FKRP-related limb-girdle muscular dystrophy R9 (Orphanet:34515), Walker-Warburg syndrome (Orphanet:899), Muscle-eye-brain disease (Orphanet:588), Autosomal recessive limb-girdle muscular dystrophy (Orphanet:102015), Rare cardiomyopathy (Orphanet:167848), Rare hypertrophic cardiomyopathy (Orphanet:217569), Dilated cardiomyopathy (Orphanet:217604), Limb-girdle muscular dystrophy (Orphanet:263), Distal hereditary motor neuropathy type 2 (Orphanet:139525), Congenital muscular dystrophy due to dystroglycanopathy (Orphanet:370953), Muscular dystrophy (Orphanet:98473), Congenital muscular dystrophy, Fukuyama type (Orphanet:272), Congenital muscular dystrophy type 1C (Orphanet:52428), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
201 total (30 of 201 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000050 | Hypoplastic male external genitalia |
| HP:0000054 | Micropenis |
| HP:0000110 | Renal dysplasia |
| HP:0000158 | Macroglossia |
| HP:0000175 | Cleft palate |
| HP:0000176 | Submucous cleft hard palate |
| HP:0000193 | Bifid uvula |
| HP:0000204 | Cleft upper lip |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000294 | Low anterior hairline |
| HP:0000298 | Mask-like facies |
| HP:0000340 | Sloping forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000411 | Protruding ear |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000478 | Abnormality of the eye |
| HP:0000482 | Microcornea |
| HP:0000485 | Megalocornea |
| HP:0000486 | Strabismus |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000518 | Cataract |
| HP:0000525 | Abnormality iris morphology |
| HP:0000528 | Anophthalmia |
GWAS associations
0 associations (top):
MeSH disease descriptors (11)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009136 | Muscular Dystrophies | C05.651.534.500; C10.668.491.175.500; C16.320.577 |
| D049288 | Muscular Dystrophies, Limb-Girdle | C05.651.534.500.280; C10.668.491.175.500.149; C16.320.577.280 |
| D058494 | Walker-Warburg Syndrome | C10.500.507.450.499.249.500; C11.270.881; C16.131.666.507.450.499.249.500; C16.320.577.750 |
| C538640 | Limb-girdle muscular dystrophy autosomal recessive (supp.) | |
| C564691 | Muscular Dystrophy, Congenital, 1C (supp.) | |
| C564612 | Muscular Dystrophy, Limb-Girdle, Type 2I (supp.) | |
| C567084 | Neuronopathy, Distal Hereditary Motor, Type IIB (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | increases expression | 2 |
| Benzo(a)pyrene | decreases expression, decreases methylation, increases methylation | 2 |
| Valproic Acid | affects expression, increases methylation | 2 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| ferrous chloride | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| Sunitinib | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Atrazine | decreases expression | 1 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Gallic Acid | increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Nickel | increases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
Cellosaurus cell lines
5 cell lines: 2 finite cell line, 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_BX03 | GM23630 | Transformed cell line | Female |
| CVCL_BX13 | GM23868 | Finite cell line | Female |
| CVCL_BX20 | GM24588 | Finite cell line | Female |
| CVCL_SN65 | HAP1 FKRP (-) 1 | Cancer cell line | Male |
| CVCL_SN66 | HAP1 FKRP (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | PHASE4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | PHASE4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | PHASE4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | PHASE4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | PHASE4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT05775848 | PHASE3 | ACTIVE_NOT_RECRUITING | Study to Evaluate the Efficacy and Safety of BBP-418 (Ribitol) in Patients With Limb Girdle Muscular Dystrophy 2I (LGMD2I) |
| NCT00170183 | PHASE3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | PHASE3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | PHASE3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | PHASE3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
| NCT00626028 | PHASE3 | COMPLETED | Comparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing |
| NCT01013714 | PHASE3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
| NCT01217827 | PHASE3 | COMPLETED | Implantable Cardioverter-Defibrillator Use in the VA System |
| NCT01648634 | PHASE3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
| NCT02924285 | PHASE3 | COMPLETED | Catheter Ablation Versus Amiodarone for Therapy of Premature Ventricular Contractions in Patients With Structural Heart Disease |
| NCT03860935 | PHASE3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
| NCT04166331 | PHASE3 | COMPLETED | Adjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion |
| NCT05175066 | PHASE3 | COMPLETED | Bisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT06158698 | PHASE3 | RECRUITING | CMP-MYTHiC Trial and Registry - CardioMyoPathy With MYocarditis THerapy With Colchicine |
| NCT06563895 | PHASE3 | RECRUITING | Acoramidis Transthyretin Amyloidosis Prevention Trial in the Young (ACT-EARLY) Study in Asymptomatic Carriers of a Pathogenic TTR Variant |
| NCT06846086 | PHASE3 | RECRUITING | Cardioprotective Effects of Melatonin in Patients With Cardiomyopathy |
| NCT07116473 | PHASE3 | NOT_YET_RECRUITING | To Evaluate the Long-term Safety and Tolerability of Acoramidis in Participants With Newly Diagnosed ATTR-CM (ACT-EARLY OLE) |
| NCT04800874 | PHASE2 | ACTIVE_NOT_RECRUITING | Study of BBP-418 in Patients With LGMD2I |
| NCT00185250 | PHASE2 | COMPLETED | Betaferon/ Betaseron (Interferon Beta-1b) in Patients With Chronic Viral Cardiomyopathy |
Related Atlas pages
- Associated diseases: autosomal recessive limb-girdle muscular dystrophy type 2I, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5, muscular dystrophy-dystroglycanopathy type B5, congenital muscular dystrophy with intellectual disability, muscle-eye-brain disease, muscular dystrophy-dystroglycanopathy, type A, muscular dystrophy-dystroglycanopathy, myopathy caused by variation in FKRP
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive limb-girdle muscular dystrophy, autosomal recessive limb-girdle muscular dystrophy type 2I, cardiomyopathy, congenital muscular dystrophy with intellectual disability, hereditary skeletal muscle disorder, limb-girdle muscular dystrophy, muscle-eye-brain disease, muscular dystrophy, muscular dystrophy-dystroglycanopathy, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5, muscular dystrophy-dystroglycanopathy type B5, muscular dystrophy-dystroglycanopathy, type A, myopathy, myopathy caused by variation in FKRP, neuronopathy, distal hereditary motor, type 2B, Nizon-Isidor syndrome