FLNC
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Also known as ABP-280ABPL
Summary
FLNC (filamin C, HGNC:3756) is a protein-coding gene on chromosome 7q32.1, encoding Filamin-C (Q14315). Muscle-specific filamin, which plays a central role in sarcomere assembly and organization. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes one of three related filamin genes, specifically gamma filamin. These filamin proteins crosslink actin filaments into orthogonal networks in cortical cytoplasm and participate in the anchoring of membrane proteins for the actin cytoskeleton. Three functional domains exist in filamin: an N-terminal filamentous actin-binding domain, a C-terminal self-association domain, and a membrane glycoprotein-binding domain. Mutations in this gene are a cause of cardiopathy. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 2318 — RefSeq curated summary.
At a glance
- Gene–disease (curated): myofibrillar myopathy (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 5,378 total — 358 pathogenic, 143 likely-pathogenic
- Phenotypes (HPO): 89
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001458
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3756 |
| Approved symbol | FLNC |
| Name | filamin C |
| Location | 7q32.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ABP-280, ABPL |
| Ensembl gene | ENSG00000128591 |
| Ensembl biotype | protein_coding |
| OMIM | 102565 |
| Entrez | 2318 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 6 protein_coding, 2 nonsense_mediated_decay, 1 retained_intron
ENST00000325888, ENST00000346177, ENST00000388853, ENST00000714183, ENST00000714184, ENST00000714185, ENST00000714186, ENST00000950262, ENST00000950263
RefSeq mRNA: 2 — MANE Select: NM_001458
NM_001127487, NM_001458
CCDS: CCDS43644, CCDS47705
Canonical transcript exons
ENST00000325888 — 48 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000364964 | 128843796 | 128843913 |
| ENSE00000364966 | 128844658 | 128845255 |
| ENSE00000721742 | 128849976 | 128850074 |
| ENSE00000882121 | 128837398 | 128837548 |
| ENSE00000882123 | 128837987 | 128838064 |
| ENSE00000882124 | 128838267 | 128838429 |
| ENSE00000882132 | 128841454 | 128841567 |
| ENSE00000882136 | 128843229 | 128843319 |
| ENSE00000882147 | 128848793 | 128848982 |
| ENSE00000882153 | 128850384 | 128850483 |
| ENSE00000882170 | 128856518 | 128856650 |
| ENSE00001131697 | 128857118 | 128857336 |
| ENSE00001131700 | 128856745 | 128856921 |
| ENSE00001131724 | 128854413 | 128854682 |
| ENSE00001131730 | 128853974 | 128854216 |
| ENSE00001131736 | 128853715 | 128853837 |
| ENSE00001131743 | 128853469 | 128853621 |
| ENSE00001131750 | 128852828 | 128853031 |
| ENSE00001131757 | 128852591 | 128852752 |
| ENSE00001131762 | 128851455 | 128851628 |
| ENSE00001207785 | 128849331 | 128849578 |
| ENSE00001207789 | 128849181 | 128849204 |
| ENSE00001207800 | 128847945 | 128848068 |
| ENSE00001207805 | 128847697 | 128847864 |
| ENSE00001207809 | 128846745 | 128846905 |
| ENSE00001207814 | 128846301 | 128846463 |
| ENSE00001207821 | 128845990 | 128846163 |
| ENSE00001207833 | 128844004 | 128844266 |
| ENSE00001207844 | 128843408 | 128843577 |
| ENSE00001207874 | 128841170 | 128841363 |
| ENSE00001207880 | 128840834 | 128840970 |
| ENSE00001207885 | 128840548 | 128840674 |
| ENSE00001207896 | 128838603 | 128838803 |
| ENSE00001207907 | 128837637 | 128837755 |
| ENSE00001267489 | 128848561 | 128848717 |
| ENSE00001267696 | 128837160 | 128837257 |
| ENSE00001372648 | 128840023 | 128840160 |
| ENSE00001504137 | 128858336 | 128859272 |
| ENSE00001504139 | 128851232 | 128851360 |
| ENSE00001504140 | 128850803 | 128850943 |
| ENSE00001504141 | 128830406 | 128830989 |
| ENSE00001691474 | 128835326 | 128835574 |
| ENSE00001722751 | 128842794 | 128842954 |
| ENSE00001775310 | 128855199 | 128855314 |
| ENSE00001775548 | 128854775 | 128854912 |
| ENSE00002474613 | 128858008 | 128858217 |
| ENSE00003549529 | 128842575 | 128842698 |
| ENSE00003586734 | 128842231 | 128842374 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 99.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 110.2300 / max 10520.1466, expressed in 1318 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80971 | 100.0516 | 1296 |
| 80970 | 8.1756 | 1209 |
| 80969 | 1.2581 | 712 |
| 80972 | 0.6391 | 392 |
| 80975 | 0.1055 | 26 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gastrocnemius | UBERON:0001388 | 99.58 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.45 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.33 | gold quality |
| apex of heart | UBERON:0002098 | 99.29 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.19 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.99 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.91 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.87 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.86 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.86 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.85 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.82 | gold quality |
| biceps brachii | UBERON:0001507 | 98.73 | gold quality |
| muscle organ | UBERON:0001630 | 98.54 | gold quality |
| muscle of leg | UBERON:0001383 | 98.43 | gold quality |
| triceps brachii | UBERON:0001509 | 98.30 | gold quality |
| heart right ventricle | UBERON:0002080 | 98.14 | gold quality |
| deltoid | UBERON:0001476 | 97.99 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 97.92 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.86 | gold quality |
| lower esophagus | UBERON:0013473 | 97.85 | gold quality |
| cardiac atrium | UBERON:0002081 | 97.37 | gold quality |
| diaphragm | UBERON:0001103 | 97.36 | gold quality |
| heart | UBERON:0000948 | 97.31 | gold quality |
| muscle tissue | UBERON:0002385 | 97.22 | gold quality |
| saphenous vein | UBERON:0007318 | 97.11 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 97.10 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 96.96 | gold quality |
| stromal cell of endometrium | CL:0002255 | 96.78 | gold quality |
| body of tongue | UBERON:0011876 | 96.75 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.59 |
| E-CURD-53 | no | 453.16 |
| E-MTAB-7249 | no | 77.62 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
33 targeting FLNC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-5010-3P | 99.83 | 70.60 | 2357 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-3934-5P | 99.67 | 64.04 | 846 |
| HSA-MIR-142-3P | 99.62 | 71.30 | 974 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
| HSA-MIR-6797-3P | 99.17 | 66.94 | 668 |
| HSA-MIR-6846-5P | 98.81 | 65.86 | 1121 |
| HSA-MIR-6848-5P | 98.81 | 65.49 | 1126 |
| HSA-MIR-6076 | 98.61 | 65.69 | 637 |
| HSA-MIR-147A | 98.33 | 66.40 | 795 |
| HSA-MIR-891A-3P | 98.05 | 67.99 | 970 |
| HSA-MIR-4736 | 97.96 | 65.89 | 1287 |
| HSA-MIR-3691-3P | 97.90 | 65.97 | 791 |
| HSA-MIR-3665 | 97.73 | 65.08 | 975 |
| HSA-MIR-1972 | 97.67 | 67.38 | 1172 |
| HSA-MIR-558 | 97.50 | 67.16 | 977 |
| HSA-MIR-6802-3P | 97.29 | 65.42 | 613 |
| HSA-MIR-644A | 96.02 | 66.52 | 786 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Accumulation is a strong but nonspecific immunohistochemical marker of core formation in muscle myopathies. (PMID:12480088)
- calpain 3 can cleave filamin C (FLNC); FLNC may be substrate for calpain 3, regulating protein-protein interactions with sarcoglycans (PMID:14506720)
- gamma filamin has one molecule, with predominantly beta secondary-structure elements, per asymmetric unit (PMID:15159586)
- results identify the muscle-specific isoform FLNc as a new physiological substrate for PKB (PMID:15461588)
- a mutation in the dimerization domain of filamin c causes a novel type of autosomal dominant myofibrillar myopathy (PMID:15929027)
- These observations start to define the basis for PI3K regulation of filamin through LL5beta. (PMID:17174070)
- The crystal structure of domain 23 of filamin C showed that the protein adopts the expected immunoglobulin (Ig)-like fold. A dimer is formed by domain 24; domain 23 has little interactions with itself or with domain 24. (PMID:17379241)
- The mutant dimerization domain of filamin C is less stable and more susceptible to proteolysis. As a consequence, it does not dimerize properly and forms aggregates in vitro. (PMID:17412757)
- Taken together, our data suggest that p73alpha is sequestered in the cytoplasm by filamin A, thereby inhibiting its transcriptional activity. (PMID:17825253)
- filamin-C, a known component of striated muscle Z-lines, interacts with nebulette modules (PMID:17987659)
- Results suggest that the novel p.Val930_Thr933del mutation in filamin C is the cause of MFM but also indicate that filamin C mutations are a comparatively rare cause of MFM. (PMID:19050726)
- Data show that in myofibrillar myopathies filamin C exhibites significant alterations in their localization. (PMID:19151983)
- A large number of variations were found in many of the genes (myozenin 1, gamma-filamin, kinectin-1) in patients with limb-girdle muscular dystrophies and controls. (PMID:19472918)
- We present a Chinese family with filaminopathy with progressive muscle weakness in all limbs with a deletion-insertion mutation in exon 18 of the filamin C (PMID:20417099)
- filamin C ABD mutations cause a recognizable distal myopathy, most likely through increased actin affinity, similar to the pathological mechanism of filamin A and filamin B ABD mutations. (PMID:21620354)
- We conclude that filamin C is a dosage-sensitive gene and that FLNC haploinsufficiency can cause a specific type of myopathy in humans. (PMID:22131542)
- study indicates that filamins are important regulators of polycystin-2 channel function, and further links actin cytoskeletal dynamics to the regulation of this channel protein (PMID:22802962)
- FLNC/filamin C mutations cause protein degradation in myofibrillar myopathy (PMID:23238331)
- Increased methylation levels of FLNC is associated with highly active Helicobacter pylori-related gastritis. (PMID:23292007)
- these studies extend previous findings to show that functional rescue of alpha2C-ARs is mediated through Rap1-filamin signaling. Perturbation of this signaling pathway may lead to alterations in alpha2C-AR trafficking and physiological function. (PMID:23864608)
- By integrating our WES and CN data we identified three mutated putative candidate genes targeted by 7q deletions (CUL1, EZH2 and FLNC), with FLNC positioned within the well-characterized 7q minimally deleted region. (PMID:24349473)
- Crystal Structures of FLNa Domains 3-5 and FLNc Domains 4-5 Show a Novel Domain-Domain Organization. (PMID:24469451)
- Aciculin interacts with filamin C and Xin and is essential for myofibril assembly. (PMID:24963132)
- alpha2C-adrenoreceptor interaction with filamin-2 (PMID:25110951)
- Mutations in the gene encoding the sarcomeric protein filamin C cause a new form of familial hypertrophic cardiomyopathy. (PMID:25351925)
- Findings indicate a functional role of filamin C in cancers. (PMID:25577646)
- FLNC is a disease gene for autosomal-dominant Restrictive Cardiomyopathy and broadens the phenotype spectrum of filaminopathies. (PMID:26666891)
- The identification of Filamin C as a novel KCNE2 ligand not only enhances current understanding of ion channel function and regulation, but also provides valuable information about possible pathways likely to be involved in long-QT syndrome pathogenesis (PMID:26956495)
- This study therefore identifies both BAG3 reduction and autophagy promotion as potential therapies for FLNC(W2710X) myofibrillar myopathy, and identifies protein insufficiency due to sequestration, compounded by impaired autophagy, as the cause. (PMID:26969713)
- Mutation in FLNC was identified as Restrictive Cardiomyopathy - causing mutation. (PMID:27339502)
- Biallelic variants in FLNC can cause congenital dilated cardiomyopathy. (PMID:27601210)
- Data show that the filamin C (FLNC) protein was significantly overexpressed with the development of hepatocellular carcinoma (HCC), which might play an important role in HCC invasion and metastasis. (PMID:27626164)
- Truncating mutations in FLNC caused an overlapping phenotype of dilated and left-dominant arrhythmogenic cardiomyopathies complicated by frequent premature sudden death (PMID:27908349)
- Filamin C promotes lymphatic invasion and lymphatic metastasis and increases cell motility by regulating Rac1/cdc42 activites in esophageal squamous cell carcinoma. (PMID:28031525)
- a compelling evidence of the involvement of FLNC in the development of Hypertrophic Cardiomyopathy . Most of the FLNC variants were associated with mild forms ofHypertrophic Cardiomyopathy and a reduced penetrance (PMID:28356264)
- The study confirms that truncating variants on myofibrillar myopathies- causing genes are frequently associated with dilated cardiomyopathies and also suggest that FLNC mutations could be considered as a common cause of dilated cardiomyopathy. (PMID:28436997)
- Missense variant in FLNC gene is associated with reading disability. (PMID:28866788)
- suggest that the combination of the OBSCN p.Arg4444Trp variant and of the FLNC c.5161delG mutation, can cooperatively affect myofibril stability and increase the penetrance of muscular dystrophy in the French family (PMID:29073160)
- a novel variant in FLNC was identified as pathogenic variant for familial Restrictive cardiomyopathy. (PMID:29212899)
- Study found a novel splice-site mutation in FLNC gene (c.2389+1G>A) which co-segregated with all symptomatic individuals in the family with dilated cardiomyopathy (DCM). These results strongly suggest that the involvement of FLNC gene, due to haploinsufficiency, should be considered in familial cases with DCM, especially if accompanied with arrhythmia and increased incidence of sudden cardiac death. (PMID:29551499)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | flnca | ENSDARG00000018566 |
| danio_rerio | flncb | ENSDARG00000018820 |
| mus_musculus | Flnc | ENSMUSG00000068699 |
| rattus_norvegicus | Flnc | ENSRNOG00000007281 |
Paralogs (36): SYNE2 (ENSG00000054654), SPTB (ENSG00000070182), ACTN1 (ENSG00000072110), ACTN2 (ENSG00000077522), DSP (ENSG00000096696), DRP2 (ENSG00000102385), SPTBN1 (ENSG00000115306), MACF1 (ENSG00000127603), ACTN4 (ENSG00000130402), SYNE1 (ENSG00000131018), MICAL2 (ENSG00000133816), DTNA (ENSG00000134769), MICAL1 (ENSG00000135596), FLNB (ENSG00000136068), SPTBN5 (ENSG00000137877), DTNB (ENSG00000138101), GAS2L3 (ENSG00000139354), DST (ENSG00000151914), UTRN (ENSG00000152818), SPTBN4 (ENSG00000160460), SPTA1 (ENSG00000163554), CLMN (ENSG00000165959), PKHD1 (ENSG00000170927), SPTBN2 (ENSG00000173898), SYNE3 (ENSG00000176438), PLEC (ENSG00000178209), SMTNL2 (ENSG00000188176), FLNA (ENSG00000196924), SPTAN1 (ENSG00000197694), DMD (ENSG00000198947), PKHD1L1 (ENSG00000205038), DYTN (ENSG00000232125), MICAL3 (ENSG00000243156), ACTN3 (ENSG00000248746), EPPK1 (ENSG00000261150), GAS2L2 (ENSG00000270765)
Protein
Protein identifiers
Filamin-C — Q14315 (reviewed: Q14315)
Alternative names: ABP-280-like protein, ABP-L, Actin-binding-like protein, Filamin-2, Gamma-filamin
All UniProt accessions (5): Q14315, A0AAQ5BHJ9, A0AAQ5BHM3, A0AAQ5BHM5, A0AAQ5BHR4
UniProt curated annotations — full annotation on UniProt →
Function. Muscle-specific filamin, which plays a central role in sarcomere assembly and organization. Critical for normal myogenesis, it probably functions as a large actin-cross-linking protein with structural functions at the Z lines in muscle cells. May be involved in reorganizing the actin cytoskeleton in response to signaling events.
Subunit / interactions. Homodimer; the filamin repeat 24 and the second hinge domain are important for dimer formation. Interacts with FLNB, INPPL1, ITGB1A, KCND2, MYOT, MYOZ1 and MYOZ3. Interacts with sarcoglycans SGCD and SGCG. Interacts (via filament repeats 17-18, 20-21 and 24) with USP25 (isoform USP25m only). Interacts with FBLIM1. Interacts with XIRP1; this interaction is mediated by filamin 20 repeat. Interacts with KY. Interacts with IGFN1. Interacts with MICALL2. Interacts with ANK3. Interacts with SYNPO2. Interacts (via repeats 18 to 21) with PGM5 (via N-terminus); the interaction competes with XIRP1 isoform B (XinB) binding to PGM5.
Subcellular location. Cytoplasm. Membrane. Cytoskeleton. Myofibril. Sarcomere. Z line.
Tissue specificity. Highly expressed in striated muscles. Weakly expressed in thyroid, fetal brain, fetal lung, retina, spinal cord and bone marrow. Not expressed in testis, pancreas, adrenal gland, placenta, liver and kidney.
Post-translational modifications. Ubiquitinated by FBXL22, leading to proteasomal degradation.
Disease relevance. Myopathy, myofibrillar, 5 (MFM5) [MIM:609524] A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFM5 is characterized by onset in adulthood, clinical features of a limb-girdle myopathy, and focal myofibrillar destruction. The disease is caused by variants affecting the gene represented in this entry. Myopathy, distal, 4 (MPD4) [MIM:614065] A slowly progressive muscular disorder characterized by distal muscle weakness and atrophy affecting the upper and lower limbs. Onset occurs around the third to fourth decades of life, and patients remain ambulatory even after long disease duration. Muscle biopsy shows non-specific changes with no evidence of rods, necrosis, or inflammation. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, familial hypertrophic, 26 (CMH26) [MIM:617047] A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, familial restrictive 5 (RCM5) [MIM:617047] A heart disorder characterized by impaired filling of the ventricles with reduced diastolic volume, in the presence of normal or near normal wall thickness and systolic function. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Silenced in MKN28 and MKN74 gastric cancer cell lines due to aberrant methylation of the gene.
Similarity. Belongs to the filamin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q14315-1 | 1 | yes |
| Q14315-2 | 2 |
RefSeq proteins (2): NP_001120959, NP_001449* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001298 | Filamin/ABP280_rpt | Repeat |
| IPR001589 | Actinin_actin-bd_CS | Conserved_site |
| IPR001715 | CH_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR014756 | Ig_E-set | Homologous_superfamily |
| IPR017868 | Filamin/ABP280_rpt-like | Repeat |
| IPR036872 | CH_dom_sf | Homologous_superfamily |
| IPR044801 | Filamin | Family |
Pfam: PF00307, PF00630
UniProt features (201 total): strand 83, repeat 24, sequence conflict 24, sequence variant 20, modified residue 15, helix 13, region of interest 10, turn 5, domain 2, mutagenesis site 2, chain 1, compositionally biased region 1, splice variant 1
Structure
Experimental structures (PDB)
14 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1V05 | X-RAY DIFFRACTION | 1.43 |
| 7OUU | X-RAY DIFFRACTION | 1.47 |
| 7P0E | X-RAY DIFFRACTION | 1.6 |
| 7OUV | X-RAY DIFFRACTION | 1.8 |
| 2NQC | X-RAY DIFFRACTION | 2.05 |
| 3V8O | X-RAY DIFFRACTION | 2.8 |
| 8PA0 | X-RAY DIFFRACTION | 2.85 |
| 4MGX | X-RAY DIFFRACTION | 3.16 |
| 2D7M | SOLUTION NMR | |
| 2D7N | SOLUTION NMR | |
| 2D7O | SOLUTION NMR | |
| 2D7P | SOLUTION NMR | |
| 2D7Q | SOLUTION NMR | |
| 2K9U | SOLUTION NMR |
Predicted structure (AlphaFold)
No AlphaFold model available for Q14315 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (15): 5, 1002, 1161, 1338, 2042, 2233, 2236, 2238, 2586, 2617, 2620, 2623, 2632, 2714, 2718
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 1668–1674 | no effect on sarcomere structure or contractile performance in mutant induced pluripotent stem cell-derived cardiomyocyt |
| 2669 | abolishes dimerization. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-446353 | Cell-extracellular matrix interactions |
MSigDB gene sets: 350 (showing top):
WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, KEGG_MAPK_SIGNALING_PATHWAY, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_SARCOMERE_ORGANIZATION, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, HANN_RESISTANCE_TO_BCL2_INHIBITOR_UP, SRF_Q5_01, CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, ONKEN_UVEAL_MELANOMA_UP, GOBP_CELLULAR_COMPONENT_ASSEMBLY_INVOLVED_IN_MORPHOGENESIS, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_DN
GO Biological Process (3): sarcomere organization (GO:0045214), actin cytoskeleton organization (GO:0030036), muscle cell development (GO:0055001)
GO Molecular Function (6): cytoskeletal protein binding (GO:0008092), ankyrin binding (GO:0030506), identical protein binding (GO:0042802), actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (11): cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), focal adhesion (GO:0005925), sarcoplasm (GO:0016528), Z disc (GO:0030018), sarcolemma (GO:0042383), costamere (GO:0043034), intercellular bridge (GO:0045171), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Cell junction organization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| protein binding | 2 |
| cytoskeletal protein binding | 2 |
| cytoplasm | 2 |
| myofibril assembly | 1 |
| actomyosin structure organization | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| muscle cell differentiation | 1 |
| cell development | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-substrate junction | 1 |
| I band | 1 |
| plasma membrane | 1 |
| myofibril | 1 |
Protein interactions and networks
STRING
2702 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FLNC | MYOT | Q9UBF9 | 998 |
| FLNC | TLN1 | Q9Y490 | 996 |
| FLNC | TLN2 | Q9Y4G6 | 996 |
| FLNC | VCL | P18206 | 994 |
| FLNC | FBLIM1 | Q8WUP2 | 990 |
| FLNC | PXN | P49023 | 981 |
| FLNC | SGCD | Q92629 | 946 |
| FLNC | MYOZ1 | Q9NP98 | 945 |
| FLNC | LDB3 | O75112 | 916 |
| FLNC | BAG3 | O95817 | 914 |
| FLNC | SGCG | Q13326 | 893 |
| FLNC | TCAP | O15273 | 875 |
| FLNC | CAV1 | Q03135 | 860 |
| FLNC | DMD | P11532 | 856 |
| FLNC | MYOZ2 | Q9NPC6 | 835 |
IntAct
176 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KCTD13 | CUL3 | psi-mi:“MI:0914”(association) | 0.870 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| FRYL | YWHAZ | psi-mi:“MI:0914”(association) | 0.710 |
| TANC2 | TAX1BP3 | psi-mi:“MI:0914”(association) | 0.690 |
| NUAK2 | PPP1R12A | psi-mi:“MI:0914”(association) | 0.640 |
| FLNC | SGCD | psi-mi:“MI:0915”(physical association) | 0.590 |
| FLNC | SGCG | psi-mi:“MI:0915”(physical association) | 0.590 |
| SGCG | FLNC | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| FLNC | SGCD | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| SGCD | FLNC | psi-mi:“MI:0915”(physical association) | 0.590 |
| MYOT | FLNC | psi-mi:“MI:0915”(physical association) | 0.580 |
| FLNC | MYOT | psi-mi:“MI:0915”(physical association) | 0.580 |
| XIRP1 | FLNC | psi-mi:“MI:0915”(physical association) | 0.560 |
| XIRP1 | FLNC | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| XIRP1 | FLNC | psi-mi:“MI:0403”(colocalization) | 0.560 |
| FLNC | XIRP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TUBB3 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| PLEKHO1 | UBA6 | psi-mi:“MI:0914”(association) | 0.530 |
| RAB8B | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| NT5C | RAP1GDS1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (296): FLNC (Two-hybrid), FLNC (Two-hybrid), FLNC (Two-hybrid), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS), FLNC (Affinity Capture-MS)
ESM2 similar proteins: A0A087WV53, A1CS92, A2ABU4, A2Q908, A2RUH7, A4QZL9, D3ZHA0, O01761, O70468, O75369, O88599, P05548, P11275, P11730, P11798, P13466, P21333, P56276, P56741, P70402, P79280, Q05623, Q13177, Q13203, Q13557, Q14315, Q2GM53, Q2HJF7, Q2URB7, Q5FW53, Q5PQM4, Q5RCC4, Q5VTT5, Q5ZJJ9, Q5ZKI0, Q62422, Q63518, Q6C1H8, Q6P686, Q6PHZ2
Diamond homologs: A4IF63, A5D7F8, A5D8S5, D2GXS7, D3ZHA0, D3ZQG6, F7H9X2, O70277, O75369, O75382, P13466, P21333, Q14315, Q1XHU0, Q28E95, Q3UIW8, Q5RBR0, Q60953, Q69ZI1, Q6NRD3, Q71F54, Q7Z6J0, Q80X90, Q80XJ2, Q8BTM8, Q8C120, Q8TEJ3, Q8VHX6, Q9C040, Q9ESN6, Q9HCM9, Q9R1R2, Q9VEN1, A5D7D1, D3ZEN0, D3ZHV2, D3ZQL6, E1BBG2, F1MF74, F1RA39
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AKT | “up-regulates quantity by stabilization” | FLNC | phosphorylation |
| PRKCA | “up-regulates quantity by stabilization” | FLNC | phosphorylation |
| FILIP1L | “down-regulates quantity by destabilization” | FLNC | binding |
| FBLIM1 | “up-regulates activity” | FLNC | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 177 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Downstream signal transduction | 5 | 15.9× | 3e-03 |
| RHO GTPases activate PKNs | 5 | 13.2× | 4e-03 |
| Selective autophagy | 5 | 11.6× | 6e-03 |
| FCGR3A-mediated phagocytosis | 6 | 9.4× | 4e-03 |
| RHO GTPase Effectors | 10 | 5.7× | 3e-03 |
| Signaling by Rho GTPases | 14 | 4.0× | 3e-03 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 14 | 3.9× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
5378 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 358 |
| Likely pathogenic | 143 |
| Uncertain significance | 2336 |
| Likely benign | 1796 |
| Benign | 134 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068545 | NM_001458.5(FLNC):c.6955del (p.Ala2319fs) | Pathogenic |
| 1068586 | NM_001458.5(FLNC):c.4432C>T (p.Gln1478Ter) | Pathogenic |
| 1068631 | NM_001458.5(FLNC):c.1205del (p.Thr402fs) | Pathogenic |
| 1068840 | NM_001458.5(FLNC):c.1991_1994del (p.Asp664fs) | Pathogenic |
| 1068841 | NM_001458.5(FLNC):c.3702del (p.Val1235fs) | Pathogenic |
| 1069362 | NM_001458.5(FLNC):c.1914C>G (p.Tyr638Ter) | Pathogenic |
| 1069877 | NM_001458.5(FLNC):c.2604del (p.Ser868fs) | Pathogenic |
| 1070209 | NM_001458.5(FLNC):c.4718T>A (p.Leu1573Ter) | Pathogenic |
| 1070523 | NM_001458.5(FLNC):c.5520T>A (p.Tyr1840Ter) | Pathogenic |
| 1070569 | NM_001458.5(FLNC):c.6802G>T (p.Glu2268Ter) | Pathogenic |
| 1070575 | NM_001458.5(FLNC):c.4755del (p.Lys1586fs) | Pathogenic |
| 1071490 | NM_001458.5(FLNC):c.1670del (p.Pro557fs) | Pathogenic |
| 1071491 | NM_001458.5(FLNC):c.5733dup (p.Gly1912fs) | Pathogenic |
| 1071678 | NM_001458.5(FLNC):c.5569_5578del (p.Ile1857fs) | Pathogenic |
| 1071863 | NC_000007.13:g.(?128470682)(128498587_?)del | Pathogenic |
| 1071864 | NC_000007.13:g.(?128469483)(128500328_?)del | Pathogenic |
| 1071931 | NM_001458.5(FLNC):c.261del (p.Pro88fs) | Pathogenic |
| 1072180 | NM_001458.5(FLNC):c.2499C>A (p.Tyr833Ter) | Pathogenic |
| 1072269 | NM_001458.5(FLNC):c.3070C>T (p.Gln1024Ter) | Pathogenic |
| 1072270 | NM_001458.5(FLNC):c.6240_6259del (p.Pro2081fs) | Pathogenic |
| 1072629 | NM_001458.5(FLNC):c.181C>T (p.Gln61Ter) | Pathogenic |
| 1073366 | NM_001458.5(FLNC):c.4946del (p.Gly1649fs) | Pathogenic |
| 1073410 | NM_001458.5(FLNC):c.156dup (p.Val53fs) | Pathogenic |
| 1074200 | NM_001458.5(FLNC):c.5557del (p.Tyr1853fs) | Pathogenic |
| 1074377 | NM_001458.5(FLNC):c.563del (p.Gly188fs) | Pathogenic |
| 1074392 | NM_001458.5(FLNC):c.2548C>T (p.Gln850Ter) | Pathogenic |
| 1074694 | NM_001458.5(FLNC):c.146_147insT (p.Leu50fs) | Pathogenic |
| 1074904 | NM_001458.5(FLNC):c.1893G>A (p.Trp631Ter) | Pathogenic |
| 1075295 | NM_001458.5(FLNC):c.4275dup (p.Arg1426fs) | Pathogenic |
| 1076103 | NM_001458.5(FLNC):c.4557T>A (p.Tyr1519Ter) | Pathogenic |
SpliceAI
6086 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:128830990:G:A | donor_loss | 1.0000 |
| 7:128830991:T:A | donor_loss | 1.0000 |
| 7:128835325:G:GC | acceptor_gain | 1.0000 |
| 7:128835325:GACA:G | acceptor_gain | 1.0000 |
| 7:128835532:G:GT | donor_gain | 1.0000 |
| 7:128835572:CCGG:C | donor_loss | 1.0000 |
| 7:128835575:G:C | donor_loss | 1.0000 |
| 7:128835575:G:GG | donor_gain | 1.0000 |
| 7:128835576:T:A | donor_loss | 1.0000 |
| 7:128837150:A:AG | acceptor_gain | 1.0000 |
| 7:128837151:C:G | acceptor_gain | 1.0000 |
| 7:128837155:TCCA:T | acceptor_loss | 1.0000 |
| 7:128837156:CCA:C | acceptor_loss | 1.0000 |
| 7:128837157:CA:C | acceptor_loss | 1.0000 |
| 7:128837158:A:AG | acceptor_gain | 1.0000 |
| 7:128837158:AG:A | acceptor_gain | 1.0000 |
| 7:128837159:G:A | acceptor_loss | 1.0000 |
| 7:128837159:G:GA | acceptor_gain | 1.0000 |
| 7:128837159:GG:G | acceptor_gain | 1.0000 |
| 7:128837159:GGT:G | acceptor_gain | 1.0000 |
| 7:128837159:GGTC:G | acceptor_gain | 1.0000 |
| 7:128837159:GGTCT:G | acceptor_gain | 1.0000 |
| 7:128837254:CCAGG:C | donor_loss | 1.0000 |
| 7:128837258:GT:G | donor_loss | 1.0000 |
| 7:128837391:A:AG | acceptor_gain | 1.0000 |
| 7:128837391:ATC:A | acceptor_gain | 1.0000 |
| 7:128837392:T:G | acceptor_gain | 1.0000 |
| 7:128837393:C:CA | acceptor_gain | 1.0000 |
| 7:128837395:CAGGT:C | acceptor_loss | 1.0000 |
| 7:128837396:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
17775 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:128830737:T:A | W34R | 1.000 |
| 7:128830737:T:C | W34R | 1.000 |
| 7:128830739:G:C | W34C | 1.000 |
| 7:128830739:G:T | W34C | 1.000 |
| 7:128830762:T:C | F42S | 1.000 |
| 7:128830770:T:A | W45R | 1.000 |
| 7:128830770:T:C | W45R | 1.000 |
| 7:128830772:G:C | W45C | 1.000 |
| 7:128830772:G:T | W45C | 1.000 |
| 7:128830836:G:A | G67R | 1.000 |
| 7:128830836:G:C | G67R | 1.000 |
| 7:128830836:G:T | G67W | 1.000 |
| 7:128830911:T:C | F92L | 1.000 |
| 7:128830913:C:A | F92L | 1.000 |
| 7:128830913:C:G | F92L | 1.000 |
| 7:128830927:T:C | L97P | 1.000 |
| 7:128830934:C:A | N99K | 1.000 |
| 7:128830934:C:G | N99K | 1.000 |
| 7:128830945:C:A | A103D | 1.000 |
| 7:128830948:T:C | L104P | 1.000 |
| 7:128830953:T:C | F106L | 1.000 |
| 7:128830954:T:C | F106S | 1.000 |
| 7:128830955:C:A | F106L | 1.000 |
| 7:128830955:C:G | F106L | 1.000 |
| 7:128830957:T:C | L107P | 1.000 |
| 7:128835338:T:A | I122N | 1.000 |
| 7:128835359:T:C | L129P | 1.000 |
| 7:128835365:T:C | L131P | 1.000 |
| 7:128835367:G:C | G132R | 1.000 |
| 7:128835368:G:A | G132D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000067177 (7:128833592 A>C), RS1000105837 (7:128855490 G>A,T), RS1000138607 (7:128832221 C>A,T), RS1000259870 (7:128844375 G>A), RS1000464437 (7:128846569 CAG>C), RS1000482846 (7:128851107 C>T), RS1000562422 (7:128855227 T>C,G), RS1000564886 (7:128828672 C>T), RS1000607433 (7:128828932 A>C), RS1000811667 (7:128835920 A>AT), RS1000944245 (7:128858052 G>A,C), RS1001455078 (7:128852156 G>A), RS1001533046 (7:128839811 C>G,T), RS1001774848 (7:128842642 G>C), RS1001883614 (7:128845445 G>A)
Disease associations
OMIM: gene MIM:102565 | disease phenotypes: MIM:609524, MIM:614065, MIM:617047, MIM:115210, MIM:187500, MIM:115200, MIM:601419, MIM:615325, MIM:256030, MIM:160500, MIM:192600, MIM:194200, MIM:115080
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| dilated cardiomyopathy | Definitive | Autosomal dominant |
| myofibrillar myopathy 5 | Definitive | Autosomal dominant |
| distal myopathy with posterior leg and anterior hand involvement | Strong | Autosomal dominant |
| hypertrophic cardiomyopathy 26 | Strong | Autosomal dominant |
| myofibrillar myopathy | Strong | Autosomal dominant |
| familial isolated restrictive cardiomyopathy | Supportive | Autosomal dominant |
| heart conduction disease | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| myofibrillar myopathy | Definitive | AD |
| dilated cardiomyopathy | Definitive | AD |
Mondo (25): myofibrillar myopathy 5 (MONDO:0012289), distal myopathy with posterior leg and anterior hand involvement (MONDO:0013550), hypertrophic cardiomyopathy 26 (MONDO:0014883), cardiomyopathy (MONDO:0004994), restrictive cardiomyopathy (MONDO:0005201), limb-girdle muscular dystrophy (MONDO:0016971), dilated cardiomyopathy (MONDO:0005021), cardiomyopathy, familial restrictive, 1 (MONDO:0007270), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), tetralogy of fallot (MONDO:0008542), familial dilated cardiomyopathy (MONDO:0016333), cardiomyopathy, familial restrictive, 5 (MONDO:0800371), hypertrophic cardiomyopathy (MONDO:0005045), myofibrillar myopathy 1 (MONDO:0011076), cardiovascular disorder (MONDO:0004995)
Orphanet (22): Muscle filaminopathy (Orphanet:171445), FLNC-related handgrip and calf weakness-distal myopathy (Orphanet:63273), Familial isolated restrictive cardiomyopathy (Orphanet:75249), Rare cardiomyopathy (Orphanet:167848), Restrictive cardiomyopathy (Orphanet:217632), Limb-girdle muscular dystrophy (Orphanet:263), Dilated cardiomyopathy (Orphanet:217604), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Tetralogy of Fallot (Orphanet:3303), Familial dilated cardiomyopathy (Orphanet:217607), Rare hypertrophic cardiomyopathy (Orphanet:217569), Autosomal recessive limb-girdle muscular dystrophy type 2R (Orphanet:363543), Desminopathy (Orphanet:98909), Nemaline myopathy (Orphanet:607), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751)
HPO phenotypes
89 total (30 of 89 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000759 | Abnormal peripheral nervous system morphology |
| HP:0001265 | Hyporeflexia |
| HP:0001279 | Syncope |
| HP:0001288 | Gait disturbance |
| HP:0001297 | Stroke |
| HP:0001324 | Muscle weakness |
| HP:0001430 | Abnormal calf musculature morphology |
| HP:0001626 | Abnormality of the cardiovascular system |
| HP:0001635 | Congestive heart failure |
| HP:0001638 | Cardiomyopathy |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001653 | Mitral regurgitation |
| HP:0001678 | Atrioventricular block |
| HP:0001712 | Left ventricular hypertrophy |
| HP:0001907 | Thromboembolism |
| HP:0002015 | Dysphagia |
| HP:0002093 | Respiratory insufficiency |
| HP:0002094 | Dyspnea |
| HP:0002141 | Gait imbalance |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002240 | Hepatomegaly |
| HP:0002515 | Waddling gait |
| HP:0002540 | Inability to walk |
| HP:0002600 | Hyporeflexia of lower limbs |
| HP:0002747 | Respiratory insufficiency due to muscle weakness |
| HP:0003198 | Myopathy |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003236 | Elevated circulating creatine kinase concentration |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004401_3 | Reading disability or specific language impairment (pleiotropy) | 4.000000e-07 |
| GCST004402_3 | Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy) | 3.000000e-07 |
| GCST011202_2 | Dilated cardiomyopathy (MTAG) | 9.000000e-12 |
| GCST011210_2 | Dilated cardiomyopathy | 7.000000e-10 |
| GCST012100_17 | Hypertrophic cardiomyopathy (sarcomere positive) | 6.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004337 | intelligence |
MeSH disease descriptors (16)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D002313 | Cardiomyopathy, Restrictive | C14.280.238.160 |
| D002318 | Cardiovascular Diseases | C14 |
| D054092 | Foramen Ovale, Patent | C14.240.400.560.375.258; C14.280.400.560.375.258; C16.131.240.400.560.375.258 |
| D049288 | Muscular Dystrophies, Limb-Girdle | C05.651.534.500.280; C10.668.491.175.500.149; C16.320.577.280 |
| D017696 | Myopathies, Nemaline | C05.651.575.290; C10.668.491.550.290 |
| D013771 | Tetralogy of Fallot | C14.240.400.849; C14.280.400.849; C16.131.240.400.849 |
| D014927 | Wolff-Parkinson-White Syndrome | C14.280.067.780.977; C14.280.123.750.977; C16.131.240.400.980 |
| C566168 | Cardiomyopathy, Familial Restrictive, 1 (supp.) | |
| C537932 | Filaminopathy, autosomal dominant (supp.) | |
| C580316 | Myofibrillar Myopathy (supp.) | |
| C536231 | familial dilated cardiomyopathy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
85 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects cotreatment, increases expression, affects methylation, decreases expression, decreases methylation (+1 more) | 5 |
| bisphenol A | increases methylation, decreases expression, increases expression, affects expression, affects methylation (+1 more) | 4 |
| sodium arsenite | increases expression, affects cotreatment | 3 |
| Estradiol | affects cotreatment, increases expression, affects binding, increases reaction, decreases expression | 3 |
| Valproic Acid | increases expression, increases methylation | 3 |
| Aflatoxin B1 | increases expression, increases methylation | 3 |
| bisphenol F | increases expression, affects cotreatment, decreases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| (+)-JQ1 compound | decreases expression, increases expression | 2 |
| Fulvestrant | affects cotreatment, increases methylation, decreases expression, decreases methylation | 2 |
| Air Pollutants | increases expression, decreases expression, increases abundance | 2 |
| Copper | affects binding, increases expression | 2 |
| Dactinomycin | affects cotreatment, increases expression, increases secretion | 2 |
| Lipopolysaccharides | affects expression, affects response to substance, increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Cadmium Chloride | increases expression | 2 |
| Particulate Matter | increases expression, decreases expression, increases abundance | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| methylselenic acid | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| dimethylselenide | increases expression, increases oxidation | 1 |
| pyrazolo(3,4-d)pyrimidine | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| afimoxifene | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
Cellosaurus cell lines
15 cell lines: 12 induced pluripotent stem cell, 1 embryonic stem cell, 1 transformed cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A6XE | USFi002-A | Induced pluripotent stem cell | Male |
| CVCL_B3PX | WAe009-A-70 | Embryonic stem cell | Female |
| CVCL_B5EY | ICANi002-A-1 | Induced pluripotent stem cell | Male |
| CVCL_B5H4 | FAMRCi011-A | Induced pluripotent stem cell | Male |
| CVCL_B5H5 | FAMRCi011-B | Induced pluripotent stem cell | Male |
| CVCL_B5H6 | FAMRCi010-A | Induced pluripotent stem cell | Female |
| CVCL_B5H7 | FAMRCi009-A | Induced pluripotent stem cell | Male |
| CVCL_C1S6 | SCVIi059-A | Induced pluripotent stem cell | Male |
| CVCL_C1S7 | SCVIi060-A | Induced pluripotent stem cell | Male |
| CVCL_D0F8 | HIMRi001-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
450 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | PHASE4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | PHASE4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | PHASE4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | PHASE4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | PHASE4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00170183 | PHASE3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | PHASE3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | PHASE3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | PHASE3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
Related Atlas pages
- Associated diseases: dilated cardiomyopathy, distal myopathy with posterior leg and anterior hand involvement, hypertrophic cardiomyopathy 26, heart conduction disease, myofibrillar myopathy 5, myofibrillar myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular cardiomyopathy, cardiac conduction defect, cardiomyopathy, familial restrictive, 1, cardiomyopathy, familial restrictive, 5, cardiovascular disorder, dilated cardiomyopathy, dilated cardiomyopathy 1A, distal myopathy, distal myopathy with posterior leg and anterior hand involvement, dyslexia, familial dilated cardiomyopathy, familial hypertrophic cardiomyopathy, heart conduction disease, hypertrophic cardiomyopathy, hypertrophic cardiomyopathy 26, limb-girdle muscular dystrophy, myofibrillar myopathy, myofibrillar myopathy 1, myofibrillar myopathy 5, nemaline myopathy, patent foramen ovale, restrictive cardiomyopathy, specific language impairment, tetralogy of fallot, Wolff-Parkinson-White syndrome