FLT3
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Also known as STK1FLK2CD135
Summary
FLT3 (fms related receptor tyrosine kinase 3, HGNC:3765) is a protein-coding gene on chromosome 13q12.2, encoding Receptor-type tyrosine-protein kinase FLT3 (P36888). Tyrosine-protein kinase that acts as a cell-surface receptor for the cytokine FLT3LG and regulates differentiation, proliferation and survival of hematopoietic progenitor cells and of dendritic cells. In precision oncology, FLT3 ITD confers sensitivity to Gilteritinib in Acute Myeloid Leukemia (CIViC Level A); 79 further curated variant–drug associations are listed below.
This gene encodes a class III receptor tyrosine kinase that regulates hematopoiesis. This receptor is activated by binding of the fms-related tyrosine kinase 3 ligand to the extracellular domain, which induces homodimer formation in the plasma membrane leading to autophosphorylation of the receptor. The activated receptor kinase subsequently phosphorylates and activates multiple cytoplasmic effector molecules in pathways involved in apoptosis, proliferation, and differentiation of hematopoietic cells in bone marrow. Mutations that result in the constitutive activation of this receptor result in acute myeloid leukemia and acute lymphoblastic leukemia.
Source: NCBI Gene 2322 — RefSeq curated summary.
At a glance
- Gene–disease (curated): leukemia, acute myeloid, susceptibility to (Limited, ClinGen)
- GWAS associations: 63
- Clinical variants (ClinVar): 245 total — 10 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 5
- Druggable target: yes — 143 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 80 curated variant–drug associations
- Cancer driver (intOGen): activating (oncogene-like) across 2 cancer types
- Transcription factor: yes — 19 downstream targets (CollecTRI)
- MANE Select transcript:
NM_004119
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3765 |
| Approved symbol | FLT3 |
| Name | fms related receptor tyrosine kinase 3 |
| Location | 13q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | STK1, FLK2, CD135 |
| Ensembl gene | ENSG00000122025 |
| Ensembl biotype | protein_coding |
| OMIM | 136351 |
| Entrez | 2322 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000241453, ENST00000380987, ENST00000469894, ENST00000864668
RefSeq mRNA: 1 — MANE Select: NM_004119
NM_004119
CCDS: CCDS31953
Canonical transcript exons
ENST00000241453 — 24 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000827401 | 28037185 | 28037288 |
| ENSE00000827402 | 28035935 | 28036043 |
| ENSE00000827403 | 28035495 | 28035673 |
| ENSE00000827404 | 28034301 | 28034407 |
| ENSE00000827405 | 28034082 | 28034214 |
| ENSE00000827406 | 28033887 | 28033991 |
| ENSE00000827407 | 28028178 | 28028288 |
| ENSE00000827408 | 28027088 | 28027241 |
| ENSE00000906608 | 28048275 | 28048443 |
| ENSE00000906609 | 28049384 | 28049537 |
| ENSE00000906610 | 28049635 | 28049774 |
| ENSE00000906611 | 28050095 | 28050222 |
| ENSE00000906612 | 28052545 | 28052674 |
| ENSE00000906613 | 28057347 | 28057462 |
| ENSE00000906614 | 28061867 | 28062069 |
| ENSE00000906615 | 28070491 | 28070612 |
| ENSE00001487116 | 28003274 | 28004174 |
| ENSE00003513156 | 28014452 | 28014557 |
| ENSE00003519436 | 28023350 | 28023477 |
| ENSE00003552851 | 28015590 | 28015701 |
| ENSE00003565636 | 28024861 | 28024943 |
| ENSE00003598146 | 28018467 | 28018589 |
| ENSE00003692016 | 28015157 | 28015256 |
| ENSE00003896396 | 28100468 | 28100576 |
Expression profiles
Bgee: expression breadth ubiquitous, 166 present calls, max score 86.25.
FANTOM5 (CAGE): breadth broad, TPM avg 2.7806 / max 577.0111, expressed in 297 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 136527 | 2.7297 | 296 |
| 136526 | 0.0509 | 21 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.25 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 81.49 | gold quality |
| cerebellar cortex | UBERON:0002129 | 81.37 | gold quality |
| monocyte | CL:0000576 | 81.07 | gold quality |
| mononuclear cell | CL:0000842 | 80.55 | gold quality |
| leukocyte | CL:0000738 | 80.03 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 80.01 | gold quality |
| cerebellum | UBERON:0002037 | 79.31 | gold quality |
| bone marrow cell | CL:0002092 | 73.72 | silver quality |
| bone marrow | UBERON:0002371 | 72.76 | gold quality |
| lymph node | UBERON:0000029 | 71.18 | gold quality |
| granulocyte | CL:0000094 | 70.09 | gold quality |
| body of pancreas | UBERON:0001150 | 69.61 | gold quality |
| spleen | UBERON:0002106 | 68.87 | gold quality |
| vermiform appendix | UBERON:0001154 | 68.31 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 67.90 | gold quality |
| gall bladder | UBERON:0002110 | 66.94 | gold quality |
| pancreas | UBERON:0001264 | 66.82 | gold quality |
| right lung | UBERON:0002167 | 66.38 | gold quality |
| blood | UBERON:0000178 | 66.37 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 66.30 | gold quality |
| spinal cord | UBERON:0002240 | 65.24 | gold quality |
| caecum | UBERON:0001153 | 63.82 | gold quality |
| cerebellar vermis | UBERON:0004720 | 63.55 | silver quality |
| tibialis anterior | UBERON:0001385 | 63.36 | silver quality |
| islet of Langerhans | UBERON:0000006 | 62.86 | gold quality |
| rectum | UBERON:0001052 | 62.02 | gold quality |
| prefrontal cortex | UBERON:0000451 | 61.12 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 61.08 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 59.89 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6678 | yes | 171.14 |
| E-HCAD-6 | yes | 29.00 |
| E-ANND-3 | yes | 10.72 |
| E-MTAB-9801 | yes | 8.15 |
| E-GEOD-99795 | no | 21.87 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
19 targets.
| Target | Regulation |
|---|---|
| BCL2L1 | Activation |
| BCL2L11 | Repression |
| CDKN1A | Activation |
| CDKN1B | Repression |
| CEBPA | Unknown |
| CEBPB | Repression |
| CISH | Activation |
| FZD4 | Unknown |
| ID1 | Activation |
| PARP1 | Activation |
| PIM1 | Activation |
| PIM2 | Activation |
| PTPN6 | Unknown |
| RAD51 | Activation |
| SOCS2 | Activation |
| SOCS3 | Activation |
| SPI1 | Unknown |
| USP22 | Activation |
| XRCC5 | Activation |
Upstream regulators (CollecTRI, top): CEBPA, HES1, HOXA9, IKZF1, KAT6B, MEIS1, MYB, NCOR1, PAX5, PML, RUNX1, SPI1, STAT3, TXK
miRNA regulators (miRDB)
56 targeting FLT3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
Literature-anchored findings (GeneRIF, showing 40)
- First report of D835X mutations in human. Activating mutation of D835 within the activation loop of FLT3 in human hematologic malignancies. (PMID:11290608)
- Flt3/Flk-2-ligand in synergy with thrombopoietin may slow down megakaryocyte development by causing increased proliferation of megakaryocyte progenitor cells. (PMID:11983110)
- induces acute promyelocytic leukemia in a mouse model (PMID:12060771)
- Analysis of FLT3 length mutations in 1003 patients with acute myeloid leukemia (PMID:12070009)
- duplicated in relapsed acute myeloid leukemia (PMID:12239146)
- mutations occur in paired presentation and relapse samples from patients with acute myeloid leukemia (PMID:12239147)
- 767 of 6586 genes differed in expression between FLT3-WT- and FLT-ITD(internal tandem duplication)-expressing cell lines. ITD mutations of Flt3 activate transcriptional programs that partially mimic IL-3 activity. (PMID:12468433)
- Internal tandem duplication of the Flt3 gene appearing or altering at time of AML relapse suggests Flt3-gene abnormalities are very important in the pathogenesis of chemotherapy-resistant AML (PMID:12481903)
- The striking difference in flt3 and c-kit expression on hematopoietic stem cells translated into a corresponding difference in flt3 and c-kit function because FL was more efficient than SCF at supporting the survival of HSCs (PMID:12676789)
- Intracellular signaling initiated by Flt3 ligation modulates the functional phenotype for native human AML blasts both with and without genetic Flt3 abnormalities. (PMID:12681969)
- FLT3 mutations that lead to constitutive receptor activation and confer a poor prognosis in AML (PMID:12691136)
- FLT3/ITD is less common in pediatric than in adult acute myeloid leukemia and FLT3/ITD is a strong and independent adverse prognostic factor, and high ratios between mutant and WT-FLT3 further compromise prognosis. (PMID:12816873)
- antiapoptotic pathways from FLT3 with internal tandem duplication are more divergent than those from WtFLT3 (PMID:12842996)
- Mutations in the FLT3 gene are common in AML, including tandem repeats or a mutation in the kinase domain. (PMID:12854887)
- No significant correlation was found between FLT3 mutations and high levels of MDR1 in acute myeloid leukemia. (PMID:12926083)
- REVIEW: The role of FLT3 mutations in APL and other AML (PMID:12935959)
- wtFLT3 is often constitutively activated by FLT3 ligand in AML and thus, like its mutated form, might contribute to the altered signaling that characterizes leukemogenesis. (PMID:12969963)
- FLT3-D835/I836 mutations are one of the second genetic events in infant ALL with MLL rearrangements or pediatric ALL with hyperdiploidy (PMID:14504097)
- reduced AML1 activities predispose cells to the acquisition of the activating FLT3 mutation as a secondary event leading to full transformation in acute myeloblastic leukemia M0 (PMID:14562119)
- distinct activating FLT3-TKD mutations at position D835 mediate primary resistance to FLT3 PTK inhibitors in FLT3-transformed cell lines (PMID:14604974)
- FLT3 mutations are associated with molecular lesions in acute myeloid leukemias (PMID:14630076)
- Phosphorylation is inhibited by SU11248 in acute myeloid leukemia. (PMID:14654525)
- search for the presence of FLT3 mutations in leukemic blasts from 71 patients with childhood acute lymphoblastic leukemia discovered three novel in-frame deletions within a 7-amino acid region of the receptor juxtamembrane domain. (PMID:14670924)
- FLT3 analysis shows the autoinhibitory conformation of its complete juxtamembrane domain (PMID:14759363)
- FLT3 Asp(835) mutations may have a role in relapse of acute myeloid leukemia (PMID:14977832)
- FLT3 can negatively regulate Foxo transcription factors, thereby promoting cell survival and proliferation. (PMID:14981546)
- Mutations of Flt3 may disrupt transcriptional repressor function resulting in aberrant gene regulation and abnormal leukemia cell growth. (PMID:14982881)
- Activating mutations in the FLT3 RTK gene were found in each of 3 CD117/KIT(+) cases that were analyzed, but not in 52 other adult T-acute lymphoblastic leukemia (PMID:15044257)
- CXCR-4 expression was significantly higher in fetal liver tyrosine kinase-3 (Flt3)/internal tandem duplication (ITD) acute myeloid leukemia (PMID:15054042)
- Internal tandem duplication of the juxtamembrane domain or by activating point mutations in the second tyrosine kinase domain in FLT3 are associated with leukocytosis and the monocytic FAB subtypes M4 and M5. (PMID:15059064)
- Flt3 mutations identify patients at high risk of relapse (PMID:15061200)
- FLT3/internal tandem duplication(ITD) mutations confer a particularly poor prognosis in pediatric acute myelogenous leukemia patients (PMID:15166029)
- high frequency of FLT3 mutations in adult acute myelocytic leukemia without recurrent cytogenetic translocations. (PMID:15167911)
- FLT3 autoinhibited structure showed that N841 is the key residue in a hydrogen-bonding network that likely stabilizes the activation loop (PMID:15178581)
- Wild-type Flt3-overexpressing CD34+ cells exposed to high levels of its physiologic ligand did not produce early cobblestone areas (PMID:15242879)
- FLT3 has roles in different signal transduction pathways that control proliferation, survival and other processes in hematopoietic cells [review] (PMID:15253381)
- The loss of a clone with a mutation in the FLT3 gene at relapse did not improve the prognosis. (PMID:15289019)
- Inspection of the FLT3 structure revealed that Y842 is the key residue in regulating the switch from the closed to the open (= active) conformation of the FLT3 activation loop (PMID:15345593)
- mutations of specific residues located in the activation loop (D835X and 836-deletion in Flt-3; D816V in c-Kit) as well as a 6-base pair (6-bp) insertion at residue 840 in Flt-3 operate in a similar way (PMID:15363457)
- transformation of TF-1 cells with FLT3/ITD mutations suppressed the activity of SHP-1 by approximately 3-fold (PMID:15574429)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Flt3 | ENSMUSG00000042817 |
| rattus_norvegicus | Flt3 | ENSRNOG00000054764 |
Paralogs (53): INSRR (ENSG00000027644), MUSK (ENSG00000030304), FLT4 (ENSG00000037280), EPHA3 (ENSG00000044524), ROS1 (ENSG00000047936), LTK (ENSG00000062524), ERBB3 (ENSG00000065361), TIE1 (ENSG00000066056), FGFR2 (ENSG00000066468), FGFR3 (ENSG00000068078), EPHA8 (ENSG00000070886), FGFR1 (ENSG00000077782), EPHA6 (ENSG00000080224), TYRO3 (ENSG00000092445), FLT1 (ENSG00000102755), MET (ENSG00000105976), EPHB6 (ENSG00000106123), PDGFRB (ENSG00000113721), EPHA4 (ENSG00000116106), TEK (ENSG00000120156), KDR (ENSG00000128052), EPHB2 (ENSG00000133216), PDGFRA (ENSG00000134853), EPHA7 (ENSG00000135333), IGF1R (ENSG00000140443), NTRK3 (ENSG00000140538), ERBB2 (ENSG00000141736), EPHA2 (ENSG00000142627), EPHA5 (ENSG00000145242), EGFR (ENSG00000146648), EPHA1 (ENSG00000146904), NTRK2 (ENSG00000148053), MERTK (ENSG00000153208), EPHB1 (ENSG00000154928), KIT (ENSG00000157404), FGFR4 (ENSG00000160867), DDR2 (ENSG00000162733), RYK (ENSG00000163785), MST1R (ENSG00000164078), LMTK2 (ENSG00000164715)
Protein
Protein identifiers
Receptor-type tyrosine-protein kinase FLT3 — P36888 (reviewed: P36888)
Alternative names: FL cytokine receptor, Fetal liver kinase-2, Fms-like tyrosine kinase 3, Stem cell tyrosine kinase 1
All UniProt accessions (2): E7ER61, P36888
UniProt curated annotations — full annotation on UniProt →
Function. Tyrosine-protein kinase that acts as a cell-surface receptor for the cytokine FLT3LG and regulates differentiation, proliferation and survival of hematopoietic progenitor cells and of dendritic cells. Promotes phosphorylation of SHC1 and AKT1, and activation of the downstream effector MTOR. Promotes activation of RAS signaling and phosphorylation of downstream kinases, including MAPK1/ERK2 and/or MAPK3/ERK1. Promotes phosphorylation of FES, FER, PTPN6/SHP, PTPN11/SHP-2, PLCG1, and STAT5A and/or STAT5B. Activation of wild-type FLT3 causes only marginal activation of STAT5A or STAT5B. Mutations that cause constitutive kinase activity promote cell proliferation and resistance to apoptosis via the activation of multiple signaling pathways.
Subunit / interactions. Monomer in the absence of bound FLT3LG. Homodimer in the presence of bound FLT3LG. Interacts with FIZ1 following ligand activation. Interacts with FES, FER, LYN, FGR, HCK, SRC and GRB2. Interacts with PTPRJ/DEP-1 and PTPN11/SHP2. Interacts with RNF115 and RNF126. (Microbial infection) Interacts with human cytomegalovirus protein UL7.
Subcellular location. Membrane. Endoplasmic reticulum lumen.
Tissue specificity. Detected in bone marrow, in hematopoietic stem cells, in myeloid progenitor cells and in granulocyte/macrophage progenitor cells (at protein level). Detected in bone marrow, liver, thymus, spleen and lymph node, and at low levels in kidney and pancreas. Highly expressed in T-cell leukemia.
Post-translational modifications. N-glycosylated, contains complex N-glycans with sialic acid. Autophosphorylated on several tyrosine residues in response to FLT3LG binding. FLT3LG binding also increases phosphorylation of mutant kinases that are constitutively activated. Dephosphorylated by PTPRJ/DEP-1, PTPN1, PTPN6/SHP-1, and to a lesser degree by PTPN12. Dephosphorylation is important for export from the endoplasmic reticulum and location at the cell membrane. Rapidly ubiquitinated by UBE2L6 and the E3 ubiquitin-protein ligase SIAH1 after autophosphorylation, leading to its proteasomal degradation.
Disease relevance. Leukemia, acute myelogenous (AML) [MIM:601626] A subtype of acute leukemia, a cancer of the white blood cells. AML is a malignant disease of bone marrow characterized by maturational arrest of hematopoietic precursors at an early stage of development. Clonal expansion of myeloid blasts occurs in bone marrow, blood, and other tissue. Myelogenous leukemias develop from changes in cells that normally produce neutrophils, basophils, eosinophils and monocytes. The gene represented in this entry may be involved in disease pathogenesis. Somatic mutations that lead to constitutive activation of FLT3 are frequent in AML patients. These mutations fall into two classes, the most common being in-frame internal tandem duplications of variable length in the juxtamembrane region that disrupt the normal regulation of the kinase activity. Likewise, point mutations in the activation loop of the kinase domain can result in a constitutively activated kinase.
Activity regulation. Present in an inactive conformation in the absence of bound ligand. FLT3LG binding leads to dimerization and activation by autophosphorylation.
Domain organisation. The juxtamembrane autoregulatory region is important for normal regulation of the kinase activity and for maintaining the kinase in an inactive state in the absence of bound ligand. Upon tyrosine phosphorylation, it mediates interaction with the SH2 domains of numerous signaling partners. In-frame internal tandem duplications (ITDs) result in constitutive activation of the kinase. The activity of the mutant kinase can be stimulated further by FLT3LG binding.
Miscellaneous. Can be used as diagnostic tool to establish the exact cause of acute myeloid leukemia, and to determine the optimal therapy.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P36888-1 | 1 | yes |
| P36888-2 | 2 |
RefSeq proteins (1): NP_004110* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR001824 | Tyr_kinase_rcpt_3_CS | Conserved_site |
| IPR007110 | Ig-like_dom | Domain |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR013151 | Immunoglobulin_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR020635 | Tyr_kinase_cat_dom | Domain |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR050122 | RTK | Family |
Pfam: PF00047, PF07714
Enzyme classification (BRENDA):
- EC 2.7.10.1 — receptor protein-tyrosine kinase (BRENDA: 44 organisms, 214 substrates, 574 inhibitors, 11 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0011–0.129 | 4 |
| AC-DYFE-6-CHLORO-W-NHME | 0.0051 | 1 |
| AC-DYFGW-NHME | 0.07 | 1 |
| YFEW | 0.232 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (100 total): helix 16, strand 15, sequence variant 14, modified residue 13, glycosylation site 10, disulfide bond 7, sequence conflict 6, mutagenesis site 4, turn 3, binding site 2, topological domain 2, domain 2, signal peptide 1, chain 1, transmembrane region 1, splice variant 1, region of interest 1, active site 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1RJB | X-RAY DIFFRACTION | 2.1 |
| 6JQR | X-RAY DIFFRACTION | 2.2 |
| 5X02 | X-RAY DIFFRACTION | 2.4 |
| 6IL3 | X-RAY DIFFRACTION | 2.5 |
| 8XB1 | X-RAY DIFFRACTION | 2.85 |
| 4RT7 | X-RAY DIFFRACTION | 3.1 |
| 4XUF | X-RAY DIFFRACTION | 3.2 |
| 7QDP | X-RAY DIFFRACTION | 3.69 |
| 3QS7 | X-RAY DIFFRACTION | 4.3 |
| 7ZV9 | X-RAY DIFFRACTION | 4.51 |
| 3QS9 | X-RAY DIFFRACTION | 7.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P36888-F1 | 76.19 | 0.30 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 811 (proton acceptor)
Ligand- & substrate-binding residues (2): 644; 616–624
Post-translational modifications (13): 572, 574, 589, 591, 599, 726, 759, 768, 793, 842, 955, 969, 993
Disulfide bonds (7): 35–65, 103–114, 199–206, 232–241, 272–330, 368–407, 381–392
Glycosylation sites (10): 43, 100, 151, 306, 323, 351, 354, 473, 502, 541
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 589 | reduced phosphorylation of the wild-type kinase in response to ligand binding. no effect on the phosphorylation of the c |
| 591 | no significant effect on tyrosine phosphorylation. abolishes activation of stat5a. |
| 599 | abolishes interaction with ptpn11/shp2 and phosphorylation of ptpn11/shp2. |
| 644 | abolishes kinase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
27 pathways
| ID | Pathway |
|---|---|
| R-HSA-109704 | PI3K Cascade |
| R-HSA-1257604 | PIP3 activates AKT signaling |
| R-HSA-2219530 | Constitutive Signaling by Aberrant PI3K in Cancer |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6811558 | PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling |
| R-HSA-9607240 | FLT3 Signaling |
| R-HSA-9645135 | STAT5 Activation |
| R-HSA-9702509 | FLT3 mutants bind TKIs |
| R-HSA-9702518 | STAT5 activation downstream of FLT3 ITD mutants |
| R-HSA-9702569 | KW2449-resistant FLT3 mutants |
| R-HSA-9702577 | semaxanib-resistant FLT3 mutants |
| R-HSA-9702581 | crenolanib-resistant FLT3 mutants |
| R-HSA-9702590 | gilteritinib-resistant FLT3 mutants |
| R-HSA-9702596 | lestaurtinib-resistant FLT3 mutants |
| R-HSA-9702600 | midostaurin-resistant FLT3 mutants |
| R-HSA-9702605 | pexidartinib-resistant FLT3 mutants |
| R-HSA-9702614 | ponatinib-resistant FLT3 mutants |
| R-HSA-9702620 | quizartinib-resistant FLT3 mutants |
| R-HSA-9702624 | sorafenib-resistant FLT3 mutants |
| R-HSA-9702632 | sunitinib-resistant FLT3 mutants |
| R-HSA-9702636 | tandutinib-resistant FLT3 mutants |
| R-HSA-9702998 | linifanib-resistant FLT3 mutants |
| R-HSA-9703009 | tamatinib-resistant FLT3 mutants |
| R-HSA-9703648 | Signaling by FLT3 ITD and TKD mutants |
| R-HSA-9706369 | Negative regulation of FLT3 |
| R-HSA-9706374 | FLT3 signaling through SRC family kinases |
| R-HSA-9706377 | FLT3 signaling by CBL mutants |
MSigDB gene sets: 0 (showing top):
GO Biological Process (26): leukocyte homeostasis (GO:0001776), myeloid progenitor cell differentiation (GO:0002318), pro-B cell differentiation (GO:0002328), cell surface receptor protein tyrosine kinase signaling pathway (GO:0007169), positive regulation of cell population proliferation (GO:0008284), cell migration (GO:0016477), peptidyl-tyrosine phosphorylation (GO:0018108), cytokine-mediated signaling pathway (GO:0019221), hemopoiesis (GO:0030097), B cell differentiation (GO:0030183), common myeloid progenitor cell proliferation (GO:0035726), positive regulation of tyrosine phosphorylation of STAT protein (GO:0042531), regulation of apoptotic process (GO:0042981), positive regulation of MAP kinase activity (GO:0043406), positive regulation of MAPK cascade (GO:0043410), lymphocyte proliferation (GO:0046651), protein autophosphorylation (GO:0046777), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), cellular response to cytokine stimulus (GO:0071345), cellular response to glucocorticoid stimulus (GO:0071385), dendritic cell differentiation (GO:0097028), liver regeneration (GO:0097421), protein phosphorylation (GO:0006468), cell surface receptor signaling pathway (GO:0007166), positive regulation of macromolecule metabolic process (GO:0010604), vascular endothelial growth factor signaling pathway (GO:0038084)
GO Molecular Function (15): protein tyrosine kinase activity (GO:0004713), transmembrane receptor protein tyrosine kinase activity (GO:0004714), cytokine receptor activity (GO:0004896), vascular endothelial growth factor receptor activity (GO:0005021), ATP binding (GO:0005524), growth factor binding (GO:0019838), nuclear glucocorticoid receptor binding (GO:0035259), protein-containing complex binding (GO:0044877), phosphatidylinositol 3-kinase activator activity (GO:0141038), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), transmembrane signaling receptor activity (GO:0004888), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (7): endoplasmic reticulum (GO:0005783), endoplasmic reticulum lumen (GO:0005788), plasma membrane (GO:0005886), endosome membrane (GO:0010008), signaling receptor complex (GO:0043235), membrane (GO:0016020), protein-containing complex (GO:0032991)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Drug resistance of FLT3 mutants | 11 |
| IRS-mediated signalling | 1 |
| Intracellular signaling by second messengers | 1 |
| PI3K/AKT Signaling in Cancer | 1 |
| MAPK1/MAPK3 signaling | 1 |
| Negative regulation of the PI3K/AKT network | 1 |
| Cytokine Signaling in Immune system | 1 |
| FLT3 Signaling | 1 |
| FLT3 signaling in disease | 1 |
| Signaling by FLT3 ITD and TKD mutants | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell population proliferation | 2 |
| protein phosphorylation | 2 |
| positive regulation of intracellular signal transduction | 2 |
| binding | 2 |
| immune system process | 1 |
| homeostasis of number of cells | 1 |
| hematopoietic progenitor cell differentiation | 1 |
| lymphoid progenitor cell differentiation | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| cell motility | 1 |
| peptidyl-tyrosine modification | 1 |
| cell surface receptor signaling pathway | 1 |
| cellular response to cytokine stimulus | 1 |
| cell development | 1 |
| lymphocyte differentiation | 1 |
| B cell activation | 1 |
| tyrosine phosphorylation of STAT protein | 1 |
| regulation of tyrosine phosphorylation of STAT protein | 1 |
| positive regulation of peptidyl-tyrosine phosphorylation | 1 |
| apoptotic process | 1 |
| regulation of programmed cell death | 1 |
| MAP kinase activity | 1 |
| regulation of MAP kinase activity | 1 |
| positive regulation of MAPK cascade | 1 |
| positive regulation of protein serine/threonine kinase activity | 1 |
| MAPK cascade | 1 |
| regulation of MAPK cascade | 1 |
| mononuclear cell proliferation | 1 |
| lymphocyte activation | 1 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| response to cytokine | 1 |
| response to glucocorticoid | 1 |
| cellular response to corticosteroid stimulus | 1 |
| protein kinase activity | 1 |
| protein tyrosine kinase activity | 1 |
| transmembrane receptor protein kinase activity | 1 |
| transmembrane signaling receptor activity | 1 |
Protein interactions and networks
STRING
3157 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FLT3 | FLT3LG | P49771 | 998 |
| FLT3 | KITLG | P21583 | 953 |
| FLT3 | NPM1 | P06748 | 935 |
| FLT3 | CD34 | P28906 | 873 |
| FLT3 | IL3 | P08700 | 864 |
| FLT3 | ASXL1 | Q8IXJ9 | 861 |
| FLT3 | DNMT3A | Q9Y6K1 | 851 |
| FLT3 | TET2 | Q6N021 | 850 |
| FLT3 | SLAMF1 | Q13291 | 832 |
| FLT3 | RUNX1 | Q01196 | 825 |
| FLT3 | IL7R | P16871 | 822 |
| FLT3 | IDH1 | O75874 | 815 |
| FLT3 | CSF2 | P04141 | 814 |
| FLT3 | CEBPA | P49715 | 812 |
| FLT3 | IDH2 | P48735 | 797 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SYK | FLT3 | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| SYK | FLT3 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.740 |
| FLT3 | SYK | psi-mi:“MI:0915”(physical association) | 0.740 |
| SYK | FLT3 | psi-mi:“MI:0914”(association) | 0.740 |
| FLT3 | SYK | psi-mi:“MI:0403”(colocalization) | 0.740 |
| GRB10 | FLT3 | psi-mi:“MI:0915”(physical association) | 0.590 |
| FLT3 | GRB10 | psi-mi:“MI:0915”(physical association) | 0.590 |
| ABL2 | FLT3 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
BioGRID (328): FLT3 (Negative Genetic), VHL (Negative Genetic), FLT3 (Affinity Capture-MS), UBC (Affinity Capture-Western), FLT3 (Affinity Capture-MS), SPRY3 (Positive Genetic), SERPINE1 (Positive Genetic), NUAK1 (Positive Genetic), NDUFS5 (Positive Genetic), SULT1A3 (Positive Genetic), PCDHA3 (Positive Genetic), PCDHA12 (Positive Genetic), PCDHAC1 (Positive Genetic), PCDHA1 (Positive Genetic), PCDHAC2 (Positive Genetic)
ESM2 similar proteins: A0A1D5NSM8, B1AUH1, B3DK56, B3EX02, B8UU59, E2RK30, E9PZ36, E9Q612, G5E8Q8, H2A0L8, O08775, O14522, O88488, P08922, P08941, P08F94, P0C5E4, P28827, P28828, P29392, P35822, P36888, P86091, P97435, P98072, P98073, P98074, Q00342, Q05546, Q12913, Q15262, Q16827, Q26627, Q28920, Q5GIT4, Q63132, Q64455, Q6DIV5, Q6YI48, Q78DX7
Diamond homologs: D2IYS2, G3V9H8, O08775, O42127, O73791, O73798, O97799, P00529, P00545, P04048, P05532, P05622, P07333, P07949, P09581, P09619, P10721, P11362, P13369, P16092, P16234, P17948, P18460, P18461, P20786, P21802, P21803, P21804, P22182, P22455, P22607, P23049, P26618, P26619, P33497, P35546, P35590, P35916, P35917, P35918
SIGNOR signaling
115 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FLT3 | up-regulates | FLT3 | phosphorylation |
| sunitinib | down-regulates | FLT3 | “chemical inhibition” |
| anthra[1,9-cd]pyrazol-6(2H)-one | down-regulates | FLT3 | “chemical inhibition” |
| CHIR-124 | down-regulates | FLT3 | “chemical inhibition” |
| 4-amino-5-fluoro-3-[5-(4-methyl-1-piperazinyl)-1,3-dihydrobenzimidazol-2-ylidene]-2-quinolinone | down-regulates | FLT3 | “chemical inhibition” |
| “dovitinib; bis(lactic acid)” | down-regulates | FLT3 | “chemical inhibition” |
| [4-[2-(1H-indazol-3-yl)ethenyl]phenyl]-(1-piperazinyl)methanone | down-regulates | FLT3 | “chemical inhibition” |
| MK-2461 | down-regulates | FLT3 | “chemical inhibition” |
| FLT3 | up-regulates | Skeletal_muscle_differentiation | |
| quizartinib | down-regulates | FLT3 | “chemical inhibition” |
| tandutinib | down-regulates | FLT3 | “chemical inhibition” |
| TG101209 | down-regulates | FLT3 | “chemical inhibition” |
| FLT3 | “up-regulates activity” | AKT | |
| FLT3 | “down-regulates quantity by repression” | CEBPA | “transcriptional regulation” |
| FLT3 | “up-regulates activity” | SHC1 | phosphorylation |
| FLT3 | “up-regulates activity” | AKT1 | |
| FLT3 | “up-regulates activity” | RUNX1 | |
| sunitinib | “down-regulates activity” | FLT3 | “chemical inhibition” |
| regorafenib | “down-regulates activity” | FLT3 | “chemical inhibition” |
| PIM1 | “up-regulates quantity” | FLT3 | phosphorylation |
| FLT3 | “down-regulates quantity” | PTPN6 | “transcriptional regulation” |
| FLT3 | “up-regulates activity” | Glycolysis | |
| FLT3 | “up-regulates activity” | CTNNB1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 29 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of signaling by CBL | 6 | 156.8× | 1e-10 |
| FLT3 Signaling | 8 | 145.7× | 5e-14 |
| Downstream signal transduction | 5 | 100.2× | 7e-08 |
| Signaling by SCF-KIT | 7 | 91.5× | 9e-11 |
| GPVI-mediated activation cascade | 5 | 81.2× | 2e-07 |
| FCGR3A-mediated phagocytosis | 5 | 49.3× | 1e-06 |
| Constitutive Signaling by Aberrant PI3K in Cancer | 5 | 33.4× | 6e-06 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 5 | 25.5× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ephrin receptor signaling pathway | 6 | 93.8× | 1e-08 |
| cellular response to transforming growth factor beta stimulus | 5 | 62.8× | 2e-06 |
| T cell receptor signaling pathway | 6 | 41.4× | 1e-06 |
| intracellular signal transduction | 8 | 13.9× | 4e-06 |
Disease & clinical
Cancer significance
From CIViC — curated cancer-variant interpretation:
FLT3 is an important cytokine receptor involved in normal hematopoiesis. Mutations in this gene are common in acute myeloid leukemia (AML) and screening for mutations in this gene has been recommended by the World Health Organization in patients with AML, particularly in cases of cytogenetically normal AML (CN-AML). FLT3 mutations commonly co-occur with mutations such as NPM1 that are associated with CN-AML and likely modulate prognostic impact. While FLT3-ITD mutations have been associated with poorer prognosis in AML, the prognostic impact of FLT3-TKD mutations are still up for debate.
From intOGen — cancer-driver classification: activating (oncogene-like) across 2 cancer types — ALL, AML.
Clinical variants and AI predictions
ClinVar
245 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 4 |
| Uncertain significance | 78 |
| Likely benign | 40 |
| Benign | 85 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 16270 | FLT3, INTERNAL TANDEM DUP | Pathogenic |
| 16271 | NM_004119.3(FLT3):c.2520_2521insGGATCC (p.Ser840_Asn841insGlySer) | Pathogenic |
| 16272 | NM_004119.3(FLT3):c.2504A>T (p.Asp835Val) | Pathogenic |
| 16273 | NM_004119.3(FLT3):c.2503G>C (p.Asp835His) | Pathogenic |
| 16274 | NM_004119.3(FLT3):c.2503G>A (p.Asp835Asn) | Pathogenic |
| 16276 | NM_004119.3(FLT3):c.2503G>T (p.Asp835Tyr) | Pathogenic |
| 16277 | NM_004119.3(FLT3):c.2503_2505del (p.Asp835del) | Pathogenic |
| 16278 | NM_004119.3(FLT3):c.1777_1779del (p.Asp593del) | Pathogenic |
| 219096 | NM_004119.3(FLT3):c.1773_1793dup (p.Tyr597_Glu598insAspValAspPheArgGluTyr) | Pathogenic |
| 375972 | NM_004119.3(FLT3):c.2505T>A (p.Asp835Glu) | Pathogenic |
| 2572500 | NM_004119.3(FLT3):c.2533A>G (p.Arg845Gly) | Likely pathogenic |
| 4528371 | NM_004119.3(FLT3):c.1715A>G (p.Tyr572Cys) | Likely pathogenic |
| 590265 | t(13;17)(q12.2;q11.2) | Likely pathogenic |
| 800354 | NM_004119.3(FLT3):c.1714T>C (p.Tyr572His) | Likely pathogenic |
SpliceAI
4139 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:28015155:A:AC | donor_gain | 1.0000 |
| 13:28015156:C:CC | donor_gain | 1.0000 |
| 13:28015156:CATTT:C | donor_gain | 1.0000 |
| 13:28015584:ACTT:A | donor_loss | 1.0000 |
| 13:28015585:CTT:C | donor_loss | 1.0000 |
| 13:28015586:TTAC:T | donor_loss | 1.0000 |
| 13:28015587:TACCA:T | donor_loss | 1.0000 |
| 13:28015588:A:AC | donor_gain | 1.0000 |
| 13:28015588:ACCAA:A | donor_loss | 1.0000 |
| 13:28015589:C:CC | donor_gain | 1.0000 |
| 13:28015697:CGGGC:C | acceptor_gain | 1.0000 |
| 13:28015698:GGGC:G | acceptor_gain | 1.0000 |
| 13:28015698:GGGCC:G | acceptor_loss | 1.0000 |
| 13:28015699:GGC:G | acceptor_gain | 1.0000 |
| 13:28015699:GGCC:G | acceptor_loss | 1.0000 |
| 13:28015700:GC:G | acceptor_gain | 1.0000 |
| 13:28015700:GCC:G | acceptor_loss | 1.0000 |
| 13:28015701:CC:C | acceptor_gain | 1.0000 |
| 13:28015702:C:A | acceptor_loss | 1.0000 |
| 13:28015702:C:CC | acceptor_gain | 1.0000 |
| 13:28015703:T:A | acceptor_loss | 1.0000 |
| 13:28015714:C:CT | acceptor_gain | 1.0000 |
| 13:28015714:C:T | acceptor_gain | 1.0000 |
| 13:28015715:A:T | acceptor_gain | 1.0000 |
| 13:28023349:CCGA:C | donor_gain | 1.0000 |
| 13:28023352:A:AC | donor_gain | 1.0000 |
| 13:28023353:C:CC | donor_gain | 1.0000 |
| 13:28023356:AAATT:A | donor_gain | 1.0000 |
| 13:28023374:T:TA | donor_gain | 1.0000 |
| 13:28028172:GGTTA:G | donor_loss | 1.0000 |
AlphaMissense
6557 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 13:28014535:A:G | W926R | 1.000 |
| 13:28014535:A:T | W926R | 1.000 |
| 13:28015608:A:G | W879R | 1.000 |
| 13:28015608:A:T | W879R | 1.000 |
| 13:28015629:A:G | W872R | 1.000 |
| 13:28015629:A:T | W872R | 1.000 |
| 13:28015636:A:C | S869R | 1.000 |
| 13:28015636:A:T | S869R | 1.000 |
| 13:28015638:T:G | S869R | 1.000 |
| 13:28015681:C:A | W854C | 1.000 |
| 13:28015681:C:G | W854C | 1.000 |
| 13:28015683:A:G | W854R | 1.000 |
| 13:28015683:A:T | W854R | 1.000 |
| 13:28018522:T:A | D829V | 1.000 |
| 13:28018522:T:C | D829G | 1.000 |
| 13:28018522:T:G | D829A | 1.000 |
| 13:28018564:C:A | R815M | 1.000 |
| 13:28018564:C:G | R815T | 1.000 |
| 13:28018576:T:A | D811V | 1.000 |
| 13:28018576:T:G | D811A | 1.000 |
| 13:28027187:A:G | L703P | 1.000 |
| 13:28028246:A:G | L662P | 1.000 |
| 13:28033897:T:A | K644N | 1.000 |
| 13:28033897:T:G | K644N | 1.000 |
| 13:28033898:T:A | K644I | 1.000 |
| 13:28033901:A:T | V643D | 1.000 |
| 13:28033904:G:T | A642D | 1.000 |
| 13:28033943:G:T | A629D | 1.000 |
| 13:28033964:C:T | G622E | 1.000 |
| 13:28033966:A:C | F621L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000016858 (13:28073991 G>A), RS1000110668 (13:28078727 T>A), RS1000118684 (13:28067804 C>G,T), RS1000134178 (13:28079768 G>A), RS1000144711 (13:28036292 T>C), RS1000194439 (13:28006084 T>A,C), RS1000234380 (13:28032538 A>G), RS1000277067 (13:28072547 C>A,T), RS1000338328 (13:28021160 C>A,T), RS1000366438 (13:28024061 C>T), RS1000385109 (13:28044561 T>C), RS1000402186 (13:28032948 C>T), RS1000417700 (13:28088909 C>A), RS1000524703 (13:28079007 C>T), RS1000538875 (13:28037122 T>G)
Disease associations
OMIM: gene MIM:136351 | disease phenotypes: MIM:601626, MIM:254500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| leukemia, acute myeloid, susceptibility to | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| leukemia, acute myeloid, susceptibility to | Limited | AD |
Mondo (5): acute myeloid leukemia (MONDO:0018874), acute lymphoblastic leukemia (MONDO:0004967), atypical chronic myeloid leukemia, BCR-ABL1 negative (MONDO:0004653), plasma cell myeloma (MONDO:0009693), leukemia, acute myeloid, susceptibility to (MONDO:0100173)
Orphanet (5): Acute myeloid leukemia (Orphanet:519), Acute lymphoblastic leukemia (Orphanet:513), Atypical chronic myeloid leukemia (Orphanet:98824), Multiple myeloma (Orphanet:29073), AL amyloidosis (Orphanet:85443)
HPO phenotypes
5 total (5 of 5 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0004808 | Acute myeloid leukemia |
| HP:0006721 | Acute lymphoblastic leukemia |
| HP:0010982 | Polygenic inheritance |
GWAS associations
63 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002553_1 | Pancreatic cancer | 2.000000e-09 |
| GCST002783_390 | Body mass index | 1.000000e-07 |
| GCST002783_476 | Body mass index | 3.000000e-07 |
| GCST004129_8 | White blood cell count (monocyte) | 8.000000e-11 |
| GCST004608_183 | Granulocyte percentage of myeloid white cells | 5.000000e-12 |
| GCST004608_184 | Granulocyte percentage of myeloid white cells | 2.000000e-136 |
| GCST004609_199 | Monocyte percentage of white cells | 5.000000e-25 |
| GCST004609_200 | Monocyte percentage of white cells | 4.000000e-188 |
| GCST004610_134 | White blood cell count | 2.000000e-19 |
| GCST004610_135 | White blood cell count | 5.000000e-12 |
| GCST004613_36 | Sum neutrophil eosinophil counts | 2.000000e-11 |
| GCST004614_13 | Granulocyte count | 7.000000e-12 |
| GCST004620_84 | Sum basophil neutrophil counts | 2.000000e-12 |
| GCST004625_130 | Monocyte count | 3.000000e-10 |
| GCST004625_131 | Monocyte count | 3.000000e-240 |
| GCST004625_132 | Monocyte count | 2.000000e-41 |
| GCST004625_133 | Monocyte count | 7.000000e-12 |
| GCST004626_121 | Myeloid white cell count | 8.000000e-21 |
| GCST004626_122 | Myeloid white cell count | 5.000000e-16 |
| GCST004626_123 | Myeloid white cell count | 1.000000e-10 |
| GCST004629_133 | Neutrophil count | 7.000000e-12 |
| GCST004632_35 | Lymphocyte percentage of white cells | 1.000000e-12 |
| GCST005977_9 | Monocyte count | 4.000000e-15 |
| GCST005989_25 | Serum total protein levels | 1.000000e-08 |
| GCST005990_16 | Non-albumin protein levels | 6.000000e-09 |
| GCST007277_18 | Tourette syndrome | 2.000000e-07 |
| GCST007469_8 | Rapid automatized naming of digits | 8.000000e-06 |
| GCST007932_71 | Medication use (thyroid preparations) | 2.000000e-26 |
| GCST008129_78 | Body mass index | 1.000000e-18 |
| GCST008479_29 | Psoriasis | 6.000000e-06 |
EFO canonical traits (18, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0005091 | monocyte count |
| EFO:0007997 | granulocyte percentage of myeloid white cells |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0005301 | reading and spelling ability |
| EFO:0009933 | Thyroid preparation use measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0009819 | comparative body size at age 10, self-reported |
| EFO:0004587 | lymphocyte count |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015470 | Leukemia, Myeloid, Acute | C04.557.337.539.275; C15.378.508.539.275 |
| D009101 | Multiple Myeloma | C04.557.595.500; C14.907.454.460; C15.378.147.780.650; C15.378.463.515.460; C20.683.515.845; C20.683.780.650 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (4): CHEMBL1974 (SINGLE PROTEIN), CHEMBL3430908 (SELECTIVITY GROUP), CHEMBL4523735 (PROTEIN-PROTEIN INTERACTION), CHEMBL4630730 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
143 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 291,138 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1171837 | PONATINIB | 4 | 8,955 |
| CHEMBL1173655 | AFATINIB | 4 | 15,144 |
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1289494 | TIVOZANIB | 4 | 4,455 |
| CHEMBL1289926 | AXITINIB | 4 | 15,732 |
| CHEMBL1336 | SORAFENIB | 4 | 86,060 |
| CHEMBL180022 | NERATINIB | 4 | 9,404 |
| CHEMBL1834657 | INFIGRATINIB PHOSPHATE | 4 | 285 |
| CHEMBL1852688 | INFIGRATINIB | 4 | 2,209 |
| CHEMBL1873475 | IBRUTINIB | 4 | 7,994 |
| CHEMBL189963 | PALBOCICLIB | 4 | 13,102 |
| CHEMBL1946170 | REGORAFENIB | 4 | 12,678 |
| CHEMBL1983268 | ENTRECTINIB | 4 | 3,510 |
| CHEMBL2035187 | PACRITINIB | 4 | 3,345 |
| CHEMBL2103830 | FOSTAMATINIB | 4 | 3,841 |
| CHEMBL2105709 | QUIZARTINIB DIHYDROCHLORIDE | 4 | 285 |
| CHEMBL2105717 | CABOZANTINIB | 4 | 11,177 |
| CHEMBL2403108 | CERITINIB | 4 | 8,551 |
| CHEMBL24828 | VANDETANIB | 4 | 42,230 |
| CHEMBL255863 | NILOTINIB | 4 | 38,627 |
| CHEMBL288441 | BOSUTINIB | 4 | |
| CHEMBL3301607 | FILGOTINIB | 4 | |
| CHEMBL3301610 | ABEMACICLIB | 4 | |
| CHEMBL3301622 | GILTERITINIB | 4 | |
| CHEMBL3545311 | BRIGATINIB | 4 | |
| CHEMBL3813873 | PEXIDARTINIB | 4 | |
| CHEMBL4582651 | PRALSETINIB | 4 | |
| CHEMBL477772 | PAZOPANIB | 4 | |
| CHEMBL502835 | NINTEDANIB | 4 | |
| CHEMBL535 | SUNITINIB | 4 |
Clinical evidence (CIViC)
Drug × variant × indication: 80 predictive associations from 98 curated evidence items; also 25 prognostic, 10 oncogenic, 5 diagnostic, 1 functional.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| FLT3 ITD | Gilteritinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC A | EID12621 +2 |
| FLT3 ITD OR FLT3 D835 OR FLT3 I836 | Gilteritinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC A | EID7728 |
| FLT3 Mutation | Midostaurin | Acute Myeloid Leukemia | Sensitivity/Response | CIViC A | EID5261 |
| FLT3 ITD | Sorafenib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID1040 +2 |
| FLT3 F691L | Pexidartinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID8674 +1 |
| FLT3 ITD | Midostaurin | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID7061 +1 |
| FLT3 ITD | Sorafenib + Hematopoietic Cell Transplantation | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID9069 +1 |
| FLT3 Mutation | Nilotinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID5575 +1 |
| FLT3 Amplification | Sunitinib | Colorectal Cancer | Sensitivity/Response | CIViC B | EID11667 |
| FLT3 ITD | Lestaurtinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID297 |
| FLT3 ITD | Pacritinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID9217 |
| FLT3 Mutation | Gilteritinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID7283 |
| FLT3 TKD MUTATION | Midostaurin | Acute Myeloid Leukemia | Sensitivity/Response | CIViC B | EID1295 |
| FLT3 F691L | Quizartinib | Acute Myeloid Leukemia | Resistance | CIViC B | EID9718 +1 |
| FLT3 D835 | Quizartinib + Sorafenib | Acute Myeloid Leukemia | Resistance | CIViC B | EID1038 |
| FLT3 D835 | Sorafenib | Acute Myeloid Leukemia | Resistance | CIViC B | EID1039 |
| FLT3 F691L | Pexidartinib | Acute Myeloid Leukemia | Resistance | CIViC B | EID9717 |
| FLT3 ITD | Anthracycline Antineoplastic Antibiotic + Tretinoin | Acute Promyelocytic Leukemia | Resistance | CIViC B | EID1112 |
| FLT3 ITD | Selumetinib | Acute Myeloid Leukemia | Resistance | CIViC B | EID1137 |
| FLT3 ITD | Tretinoin | Acute Myeloid Leukemia | Resistance | CIViC B | EID127 |
| FLT3 TKD MUTATION | Sorafenib | Acute Myeloid Leukemia | Resistance | CIViC B | EID248 |
| FLT3 T227M | Sunitinib | Renal Cell Carcinoma | Adverse Response | CIViC B | EID1317 |
| FLT3 D835 | Sunitinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC C | EID4024 +2 |
| FLT3 D835V | Sunitinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC C | EID4022 +2 |
| FLT3 D835H | Sunitinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC C | EID4027 +1 |
| FLT3 D835Y | Gilteritinib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC C | EID12620 +1 |
| FLT3 D835Y | Sorafenib | Acute Myeloid Leukemia | Sensitivity/Response | CIViC C | EID12625 +1 |
| FLT3 Amplification | Regorafenib Anhydrous | Colorectal Cancer | Sensitivity/Response | CIViC C | EID7102 |
| FLT3 Amplification | Sorafenib | Colorectal Cancer | Sensitivity/Response | CIViC C | EID7103 |
| FLT3 Overexpression | Sunitinib | B-cell Adult Acute Lymphocytic Leukemia | Sensitivity/Response | CIViC C | EID1528 |
+50 more predictive associations (showing top 30 by evidence level).
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1933437 | Toxicity | 3 | sunitinib | Leukopenia;Myelosuppression;Neutropenia;Thrombocytopenia |
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1933437 | FLT3 | 3 | 6.50 | 1 | sunitinib |
| rs66520040 | FLT3 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type III RTKs: PDGFR, CSFR, Kit, FLT3 receptor family
Most potent curated ligand interactions (67 total), top 25:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| gilteritinib | Inhibition | 9.52 | pIC50 |
| nefextinib | Inhibition | 9.47 | pIC50 |
| denfivontinib | Inhibition | 9.4 | pIC50 |
| AC710 | Inhibition | 9.3 | pKd |
| Gö 6976 | Inhibition | 9.15 | pIC50 |
| TTT-3002 | Inhibition | 9.14 | pIC50 |
| crenolanib | Inhibition | 9.13 | pKd |
| compound 8i [PMID: 22765894] | Inhibition | 9.1 | pIC50 |
| compound 8h [PMID: 22765894] | Inhibition | 9.07 | pIC50 |
| dorsomorphin | Inhibition | 9.0 | pIC50 |
| dovitinib | Inhibition | 9.0 | pIC50 |
| RGB-286638 | Inhibition | 9.0 | pIC50 |
| ilorasertib | Inhibition | 9.0 | pIC50 |
| tuspetinib | Inhibition | 8.96 | pIC50 |
| compound 2c [PMID: 24900538] | Inhibition | 8.68 | pIC50 |
| compound 6li [Chan et al., 2022] | Inhibition | 8.6 | pKd |
| ENMD-2076 | Inhibition | 8.52 | pIC50 |
| compound 5e [PMID: 28580438] | Inhibition | 8.44 | pKd |
| compound 18e [PMID: 31670517] | Inhibition | 8.4 | pIC50 |
| compound 34f [PMID: 37535845] | Inhibition | 8.4 | pIC50 |
| linifanib | Inhibition | 8.4 | pIC50 |
| URMC-099 | Inhibition | 8.4 | pIC50 |
| quizartinib | Inhibition | 8.38 | pIC50 |
| mivavotinib | Inhibition | 8.34 | pIC50 |
| AKN-028 | Inhibition | 8.22 | pIC50 |
Binding affinities (BindingDB)
774 measured of 1128 human assays (1129 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 5-[(4-hydroxycyclohexyl)amino]-3-[4-(4-methylpiperazin-1-yl)anilino]-6-propan-2-ylpyrazine-2-carboxamide | IC50 | 0.23 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 3-[3-methoxy-4-(4-methylpiperazin-1-yl)anilino]-5-(oxan-4-ylamino)-6-propan-2-ylpyrazine-2-carboxamide | IC50 | 0.29 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 1-[2-(4-methylphenyl)-5-tert-butyl-pyrazol-3-yl]-3-[4-(2-morpholin-4-ylethoxy)naphthalen-1-yl]urea | KD | 0.37 nM | |
| 6-ethyl-5-[(4-hydroxycyclohexyl)amino]-3-[3-methyl-4-(4-propan-2-ylpiperazin-1-yl)anilino]pyrazine-2-carboxamide | IC50 | 0.37 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 6-ethyl-5-[(4-hydroxycyclohexyl)amino]-3-[4-(4-methylpiperazin-1-yl)anilino]pyrazine-2-carboxamide | IC50 | 0.4 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 3-[4-(4-methylpiperazin-1-yl)anilino]-5-(oxan-4-ylamino)-6-propan-2-ylpyrazine-2-carboxamide | IC50 | 0.41 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 4-[[5-[5-[(1-adamantylmethylamino)methyl]-2-pyridinyl]-2-(butylamino)pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 0.43 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 3-[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]-5-(oxan-4-ylamino)-6-propan-2-ylpyrazine-2-carboxamide | IC50 | 0.51 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 5-[(4-hydroxycyclohexyl)amino]-3-[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]-3-(trifluoromethyl)anilino]-6-propan-2-ylpyrazine-2-carboxamide | IC50 | 0.51 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 6-ethyl-3-[3-fluoro-4-(4-methylpiperazin-1-yl)anilino]-5-(oxan-4-ylamino)pyrazine-2-carboxamide | IC50 | 0.58 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 6-ethyl-5-[(4-hydroxycyclohexyl)amino]-3-[3-methyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]pyrazine-2-carboxamide | IC50 | 0.65 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 1-[5-(1-hydroxy-2-methylpropan-2-yl)-1,2-oxazol-3-yl]-3-[4-[6-(2-morpholin-4-ylethoxy)imidazo[2,1-b][1,3]benzothiazol-2-yl]phenyl]urea | KD | 0.68 nM | US-8551963: Imidazolothiazole compounds and methods of use thereof |
| US20250360145, Example 119 | IC50 | 0.73 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| 6-ethyl-5-[(4-hydroxy-4-methylcyclohexyl)amino]-3-[3-methyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]pyrazine-2-carboxamide | IC50 | 0.78 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| US20250360145, Example 87 | IC50 | 0.83 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| 6-ethyl-5-[(4-hydroxycyclohexyl)amino]-3-[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]pyrazine-2-carboxamide | IC50 | 0.86 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 6-ethyl-5-[(4-hydroxy-4-methylcyclohexyl)amino]-3-[3-methyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]pyrazine-2-carboxamide | IC50 | 0.86 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 4-[[5-[5-(7-azabicyclo[2.2.1]heptan-7-ylmethyl)-2-pyridinyl]-2-(butylamino)pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 0.86 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 6-ethyl-5-[(4-hydroxycyclohexyl)amino]-3-[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]-3-(trifluoromethyl)anilino]pyrazine-2-carboxamide | IC50 | 1 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 4-[[5-[5-[(1-adamantylamino)methyl]-2-pyridinyl]-2-(butylamino)pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 1 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 6-ethyl-3-[3-methyl-4-[4-(1-methylpiperidin-4-yl)piperazin-1-yl]anilino]-5-(oxan-4-ylamino)pyrazine-2-carboxamide | IC50 | 1.2 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| N-[3-[2-[4-(4-methylpiperazin-1-yl)anilino]-7-oxopteridin-8-yl]phenyl]prop-2-enamide | IC50 | 1.2 nM | US-9670213: Pteridine ketone derivative and applications thereof as EGFR, BLK, and FLT3 inhibitor |
| 1-(5-tert-butyl-1,2-oxazol-3-yl)-3-[4-[10-[2-[(1S,4S)-2,5-diazabicyclo[2.2.1]heptan-2-yl]ethoxy]-7-thia-2,5,9-triazatricyclo[6.4.0.02,6]dodeca-1(8),3,5,9,11-pentaen-4-yl]phenyl]urea | IC50 | 1.2 nM | US-9216997: Tri-heterocyclic derivatives, preparation process and uses thereof |
| 4-[[2-(butylamino)-5-[5-[[(8-methyl-8-azabicyclo[3.2.1]octan-3-yl)amino]methyl]-2-pyridinyl]pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 1.2 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 4-[[2-(4-methylanilino)-5-[5-(pyrrolidin-1-ylmethyl)-2-pyridinyl]pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 1.2 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| US20250360145, Example 83 | IC50 | 1.2 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| 6-ethyl-3-[3-methyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]-5-(oxan-4-ylamino)pyrazine-2-carboxamide | IC50 | 1.3 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| 4-[[2-(3-fluoroanilino)-5-[5-(pyrrolidin-1-ylmethyl)-2-pyridinyl]pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 1.3 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 4-[[2-(4-fluoroanilino)-5-[5-(pyrrolidin-1-ylmethyl)-2-pyridinyl]pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 1.5 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
| 4-[2-(butylamino)-5-[4-(4-methylpiperazin-1-yl)phenyl]pyrrolo[2,3-d]pyrimidin-7-yl]cyclohexan-1-ol | IC50 | 1.5 nM | US-10004755: Therapeutic uses of selected pyrrolopyrimidine compounds with anti-mer tyrosine kinase activity |
| 1-[5-(1,3-dihydroxy-2-methylpropan-2-yl)-1,2-oxazol-3-yl]-3-[4-[6-(2-morpholin-4-ylethoxy)imidazo[2,1-b][1,3]benzothiazol-2-yl]phenyl]urea | KD | 1.6 nM | US-8551963: Imidazolothiazole compounds and methods of use thereof |
| 6-chloro-5-[(4-hydroxycyclohexyl)amino]-3-[3-methyl-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]pyrazine-2-carboxamide | IC50 | 1.6 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| Staurosporine | KD | 1.7 nM | |
| 6-ethyl-3-[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]-5-(oxan-4-ylamino)pyrazine-2-carboxamide | IC50 | 1.9 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| Gilteritinib | IC50 | 1.9 nM | US-8969336: Diamino heterocyclic carboxamide compound |
| (4R)-4-[(1R)-1-[[7-[3-methoxy-4-(trifluoromethoxy)phenyl]-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 1.9 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| FORETINIB | IC50 | 1.9 nM | |
| US20250360145, Example 101 | IC50 | 1.9 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| 4-[5-[4-(azepan-4-ylamino)phenyl]-2-(butylamino)pyrrolo[2,3-d]pyrimidin-7-yl]cyclohexan-1-ol | IC50 | 2 nM | US-10004755: Therapeutic uses of selected pyrrolopyrimidine compounds with anti-mer tyrosine kinase activity |
| 8-(4-methylcyclohexyl)-N-(5,6,7,8-tetrahydro-1,6-naphthyridin-2-yl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 2.1 nM | US-8623885: Fused tricyclic dual inhibitors of CDK 4/6 and FLT3 |
| 4-[2-(4-hydroxybutylamino)-5-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]pyrrolo[2,3-d]pyrimidin-7-yl]cyclohexan-1-ol | IC50 | 2.1 nM | US-10004755: Therapeutic uses of selected pyrrolopyrimidine compounds with anti-mer tyrosine kinase activity |
| 3-methoxy-8-[[5-methoxy-6-[(5-methoxy-2-pyridinyl)methoxy]-3-pyridinyl]methyl]-1,5-naphthyridine | IC50 | 2.1 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| US20250360145, Example 93 | IC50 | 2.1 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| US20250360145, Example 56 | IC50 | 2.2 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| US20250360145, Example 72 | IC50 | 2.2 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| US20250360145, Example 100 | IC50 | 2.2 nM | US-20250360145: CSF-1R INHIBITORS AND USES THEREOF |
| N-[3-[2-[2-methoxy-4-(4-methylpiperazin-1-yl)anilino]-7-oxopteridin-8-yl]phenyl]prop-2-enamide | IC50 | 2.36 nM | US-9670213: Pteridine ketone derivative and applications thereof as EGFR, BLK, and FLT3 inhibitor |
| 2-hydroxy-1-[2-[[8-(4-methylcyclohexyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl]amino]-7,8-dihydro-5H-1,6-naphthyridin-6-yl]ethanone | IC50 | 2.4 nM | US-8623885: Fused tricyclic dual inhibitors of CDK 4/6 and FLT3 |
| 8-(4-methylcyclohexyl)-N-[6-(2-methylsulfonylethyl)-7,8-dihydro-5H-1,6-naphthyridin-2-yl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 2.4 nM | US-8623885: Fused tricyclic dual inhibitors of CDK 4/6 and FLT3 |
| 4-[[2-(4-methoxyanilino)-5-[5-(pyrrolidin-1-ylmethyl)-2-pyridinyl]pyrimidin-4-yl]amino]cyclohexan-1-ol | IC50 | 2.4 nM | US-9649309: Therapeutic uses of selected pyrimidine compounds with anti-Mer tyrosine kinase activity |
ChEMBL bioactivities
6100 potent at pChembl≥5 of 6100 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | Kd | 0.01 | nM | CHEMBL5176837 |
| 11.00 | Kd | 0.01 | nM | CHEMBL5927784 |
| 10.92 | Kd | 0.012 | nM | CHEMBL5176837 |
| 10.82 | IC50 | 0.015 | nM | CHEMBL4744130 |
| 10.81 | Kd | 0.0154 | nM | CHEMBL5195819 |
| 10.80 | Kd | 0.016 | nM | CRENOLANIB |
| 10.77 | Kd | 0.017 | nM | CHEMBL6078253 |
| 10.68 | Kd | 0.021 | nM | CHEMBL6002371 |
| 10.62 | IC50 | 0.024 | nM | CHEMBL5440655 |
| 10.60 | Kd | 0.025 | nM | CHEMBL5927784 |
| 10.47 | Kd | 0.034 | nM | CHEMBL6078253 |
| 10.42 | IC50 | 0.038 | nM | CHEMBL4519741 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6191359 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6191849 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6192901 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6189235 |
| 10.25 | Kd | 0.056 | nM | CHEMBL6078253 |
| 10.22 | IC50 | 0.06 | nM | CRENOLANIB |
| 10.22 | IC50 | 0.06 | nM | CHEMBL6192930 |
| 10.21 | IC50 | 0.061 | nM | CHEMBL5641913 |
| 10.21 | IC50 | 0.061 | nM | CHEMBL5641673 |
| 10.20 | IC50 | 0.063 | nM | CHEMBL5639694 |
| 10.20 | IC50 | 0.063 | nM | CHEMBL5639591 |
| 10.19 | Kd | 0.065 | nM | CHEMBL6002371 |
| 10.14 | IC50 | 0.072 | nM | CHEMBL4790915 |
| 10.13 | Kd | 0.074 | nM | CHEMBL6078253 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL6188781 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL6189029 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL6192679 |
| 10.05 | IC50 | 0.09 | nM | CHEMBL6191366 |
| 10.03 | Kd | 0.093 | nM | CHEMBL256961 |
| 10.00 | IC50 | 0.101 | nM | CHEMBL4086149 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL4513768 |
| 10.00 | Ki | 0.1 | nM | CHEMBL4864449 |
| 10.00 | Ki | 0.1 | nM | CHEMBL4870188 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5268237 |
| 10.00 | Kd | 0.1 | nM | CHEMBL6078253 |
| 10.00 | Ki | 0.1 | nM | CHEMBL273187 |
| 9.99 | IC50 | 0.102 | nM | CHEMBL5639373 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5593388 |
| 9.96 | Kd | 0.11 | nM | CHEMBL6002371 |
| 9.93 | IC50 | 0.118 | nM | CHEMBL5647067 |
| 9.93 | IC50 | 0.117 | nM | CHEMBL5646935 |
| 9.92 | IC50 | 0.121 | nM | CHEMBL5440655 |
| 9.92 | IC50 | 0.119 | nM | CHEMBL5646820 |
| 9.92 | Kd | 0.12 | nM | CHEMBL6002371 |
| 9.91 | IC50 | 0.123 | nM | CHEMBL3612622 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL4092761 |
| 9.88 | IC50 | 0.132 | nM | CHEMBL5639601 |
| 9.85 | IC50 | 0.14 | nM | CHEMBL6190161 |
PubChem BioAssay actives
2949 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 6-[7-methoxy-6-(1-methylpyrazol-4-yl)imidazo[1,2-a]pyridin-3-yl]-N-pyrrolidin-3-ylpyridin-2-amine | 1894563: Binding affinity to FLT3-ITD-D835V mutant (unknown origin) assessed as dissociation constant | kd | <0.0001 | uM |
| 1-(5-tert-butyl-1,2-oxazol-3-yl)-3-[3-fluoro-4-(1H-imidazo[4,5-b]pyridin-7-yloxy)phenyl]urea | 1696916: Inhibition of FLT3 ITD mutant (unknown origin) expressed in mouse BaF3 cells | ic50 | <0.0001 | uM |
| 2-[(E)-[2-(2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-1-piperazin-1-ylethanone;hydrochloride | 1868178: Binding affinity to FLT3 ITD/F691L double mutant (unknown origin) by KINOMEscan assay | kd | <0.0001 | uM |
| N-[(5-methyl-1H-imidazol-2-yl)methyl]-4-(8,9,10,11-tetrahydro-3H-pyrazolo[4,5-a]phenanthridin-7-yl)benzamide | 2003941: Inhibition of FLT3 D835Y mutant (unknown origin) | ic50 | <0.0001 | uM |
| Ponatinib | 2183012: Inhibition of FLT3-ITD F691I mutant (unknown origin) expressed in mouse BaF3 cells assessed as inhibition of FLT3-driven cell viability incubated for 72 hrs by CellTiter 96 aqueous one solution assay | ic50 | <0.0001 | uM |
| 1-[2-[5-[(3-methyloxetan-3-yl)methoxy]benzimidazol-1-yl]quinolin-8-yl]piperidin-4-amine | 1562814: Inhibition of FLT3 D835Y mutant (unknown origin) | ic50 | 0.0001 | uM |
| 5-chloro-3-[1-(2-methyl-5-nitrophenyl)sulfonylpyrrol-3-yl]pyrazolo[1,5-a]pyrimidine | 1245695: Inhibition of FLT3 (unknown origin) using biotin-Glu-Gly-Pro-Trp-Leu-Glu-Glu-Glu-Glu-Glu-Ala-Tyr-Gly-Trp-Met-Asp-Phe-NH2 as substrate after 90 mins by luminescence assay | ic50 | 0.0001 | uM |
| 1-(5-tert-butyl-1,2-oxazol-3-yl)-3-[4-(6,7-dimethoxyquinolin-4-yl)oxy-3-fluorophenyl]urea | 1696916: Inhibition of FLT3 ITD mutant (unknown origin) expressed in mouse BaF3 cells | ic50 | 0.0001 | uM |
| N-[6-(4-ethylpiperazin-1-yl)-2-methylpyrimidin-4-yl]-5-pyridin-4-yl-1,3-thiazol-2-amine;hydrochloride | 1581288: Inhibition of wild type FLT3 (unknown origin) expressed in HEK293T cells assessed as decrease in FLT3 phosphorylation at 0.1 to 1000 nM after 1 hr by Western blot analysis | ic50 | 0.0001 | uM |
| 4-[(6-ethylthieno[2,3-d]pyrimidin-4-yl)amino]-N-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]-1H-pyrazole-5-carboxamide | 1489804: Inhibition of human FLT3 using EAIYAAPFAKKK as substrate preincubated for 20 mins followed by [gamma-33P]-ATP addition measure after 120 mins by filter binding method | ic50 | 0.0001 | uM |
| N-[4-(diethylaminomethyl)phenyl]-4-(7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)-1H-pyrazole-5-carboxamide | 1489804: Inhibition of human FLT3 using EAIYAAPFAKKK as substrate preincubated for 20 mins followed by [gamma-33P]-ATP addition measure after 120 mins by filter binding method | ic50 | 0.0001 | uM |
| N-[(2S,4S,6R)-2,6-dimethyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-N-methylbenzamide | 1691299: Inhibition of human FLT3 D835Y mutant EAIYAAPFAKKK peptide as substrate in presence of 33P-gamma ATP by hotspot kinase assay | ic50 | 0.0001 | uM |
| 1-[4-[3-[[4-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]phenyl]-1,4-diazepan-1-yl]ethanone | 1756404: Inhibition of FLT3 ITD mutant (unknown origin) using Glu/Tyr peptide substrate incubated for 120 mins measured after 40 mins incubation under dark by ADP-glo based luminescence assay | ki | 0.0001 | uM |
| 1-[4-[4-[[4-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]phenyl]piperazin-1-yl]ethanone | 1756404: Inhibition of FLT3 ITD mutant (unknown origin) using Glu/Tyr peptide substrate incubated for 120 mins measured after 40 mins incubation under dark by ADP-glo based luminescence assay | ki | 0.0001 | uM |
| 3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-N-[(3R)-pyrrolidin-3-yl]-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| (4-aminopiperidin-1-yl)-[3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazol-5-yl]methanone | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-(3-aminopropyl)-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-[(1S,3S)-3-aminocyclopentyl]-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-(3-aminopropyl)-3-(6-piperidin-1-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-[(1S,3R)-3-aminocyclopentyl]-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-[(1S,3S)-3-aminocyclopentyl]-3-(6-methoxy-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143349: Inhibition of recombinant FLT3 D835Y mutant (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| 3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-N-[[(3S)-pyrrolidin-3-yl]methyl]-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-[3-(dimethylamino)propyl]-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| 3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-N-[[(3R)-pyrrolidin-3-yl]methyl]-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| N-(4-aminocyclohexyl)-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0001 | uM |
| (15S,16R,18R)-16-amino-N,15-dimethyl-3-oxo-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaene-16-carboxamide | 1927343: Inhibition of FLT3 (unknown origin) autophosphorylation expressed in human Leukemia cells | ic50 | 0.0001 | uM |
| 3-N-[4-(4-morpholin-4-ylcyclohexyl)phenyl]-1-pyridin-2-yl-1,2,4-triazole-3,5-diamine | 649408: Inhibition of human recombinant FLT3 by radiometric assay | ki | 0.0002 | uM |
| N-[(E)-(5-cyanopyrazolo[1,5-a]pyrimidin-3-yl)methylideneamino]-N,2-dimethyl-5-nitrobenzenesulfonamide | 1245695: Inhibition of FLT3 (unknown origin) using biotin-Glu-Gly-Pro-Trp-Leu-Glu-Glu-Glu-Glu-Glu-Ala-Tyr-Gly-Trp-Met-Asp-Phe-NH2 as substrate after 90 mins by luminescence assay | ic50 | 0.0002 | uM |
| N-[2-(5-chloropyrazolo[1,5-a]pyrimidin-3-yl)ethyl]-2-methyl-5-nitrobenzenesulfonamide | 1245695: Inhibition of FLT3 (unknown origin) using biotin-Glu-Gly-Pro-Trp-Leu-Glu-Glu-Glu-Glu-Glu-Ala-Tyr-Gly-Trp-Met-Asp-Phe-NH2 as substrate after 90 mins by luminescence assay | ic50 | 0.0002 | uM |
| N-[2-(5-chloropyrazolo[1,5-a]pyrimidin-3-yl)ethyl]-5-cyano-N,2-dimethylbenzenesulfonamide | 1245695: Inhibition of FLT3 (unknown origin) using biotin-Glu-Gly-Pro-Trp-Leu-Glu-Glu-Glu-Glu-Glu-Ala-Tyr-Gly-Trp-Met-Asp-Phe-NH2 as substrate after 90 mins by luminescence assay | ic50 | 0.0002 | uM |
| 4-[(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)amino]-N-(4-piperazin-1-ylphenyl)-1H-pyrazole-5-carboxamide | 1360758: Inhibition of human FLT3 by Hotspot assay | ic50 | 0.0002 | uM |
| 2-[4-(4-acetylpiperazin-1-yl)anilino]-4-(1H-indazol-3-yl)pyrimidine-5-carbonitrile | 1756404: Inhibition of FLT3 ITD mutant (unknown origin) using Glu/Tyr peptide substrate incubated for 120 mins measured after 40 mins incubation under dark by ADP-glo based luminescence assay | ki | 0.0002 | uM |
| 2-[(E)-[2-(2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-N-[(3S)-pyrrolidin-3-yl]acetamide;hydrochloride | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0002 | uM |
| 2-[(E)-[2-(5-chloro-2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-1-piperazin-1-ylethanone;hydrochloride | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0002 | uM |
| 2-[(E)-[2-(2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-N-[(3R)-pyrrolidin-3-yl]acetamide;hydrochloride | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0002 | uM |
| 2-[(E)-[2-(5-fluoro-2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-1-piperazin-1-ylethanone;hydrochloride | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0002 | uM |
| 2-[(E)-[2-(5-bromo-2-hydroxy-1H-indol-3-yl)indol-3-ylidene]amino]oxy-1-piperazin-1-ylethanone;hydrochloride | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0002 | uM |
| N-[(1S,3S)-3-aminocyclopentyl]-3-[6-(furan-3-yl)-1H-benzimidazol-2-yl]-1H-indazole-5-carboxamide | 2143349: Inhibition of recombinant FLT3 D835Y mutant (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0002 | uM |
| 3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-N-(piperidin-3-ylmethyl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0002 | uM |
| N-(3-aminopropyl)-3-(6-pyrrolidin-1-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0002 | uM |
| N-(3-amino-2-methylpropyl)-3-(6-morpholin-4-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143345: Inhibition of recombinant wild type FLT3 kinase domain (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0002 | uM |
| N-[(1S,3S)-3-aminocyclopentyl]-3-(6-pyrrolidin-1-yl-1H-benzimidazol-2-yl)-1H-indazole-5-carboxamide | 2143349: Inhibition of recombinant FLT3 D835Y mutant (unknown origin) using peptide substrate incubated for for 30 mins by HTRF assay | ic50 | 0.0002 | uM |
| 3,3,3-trifluoro-1-[4-[[2-[[6-(2-methyl-4-pyridinyl)-1H-benzimidazol-2-yl]amino]-4-pyridinyl]methyl]piperazin-1-yl]propan-1-one | 1582167: Inhibition of recombinant human N-terminal GST-tagged FLT3 (564 to end residues) expressed in sf21 cells using biotin labelled Ahx-GGEEEEYFELVKKKK peptide as substrate preincubated with enzyme for 15 mins followed by substrate addition and further incubated for 45 mins in presence of 10 uM of ATP by TR-FRET assay | ic50 | 0.0003 | uM |
| 1-[[6-[4-[2-(2-hydroxyethylamino)ethoxy]phenyl]-5-methyl-2-thiophen-2-ylthieno[2,3-d]pyrimidin-4-yl]amino]-3-methylpyrrole-2,5-dione;hydrochloride | 1317473: Inhibition of human FLT3 D835Y mutant preincubated for 15 mins followed by poly(Glu:Tyr) substrate addition for 30 mins in presence of [gamma-32P]ATP by TR-FRET assay | ic50 | 0.0003 | uM |
| 4-amino-5-fluoro-3-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-quinolin-2-one | 1425006: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0003 | uM |
| 5-fluoro-3-[(3E)-3-(2-piperazin-1-ylethoxyimino)indol-2-yl]-1H-indol-2-ol | 1868174: Inhibition of human recombinant His-tagged FLT3/D835Y mutant expressed in baculovirus expression system incubated for 30 mins in presence of ATP by HTRF analysis | ic50 | 0.0003 | uM |
| N-[4-(piperazin-1-ylmethyl)phenyl]-4-(thieno[2,3-d]pyrimidin-4-ylamino)-1H-pyrazole-5-carboxamide | 1489804: Inhibition of human FLT3 using EAIYAAPFAKKK as substrate preincubated for 20 mins followed by [gamma-33P]-ATP addition measure after 120 mins by filter binding method | ic50 | 0.0003 | uM |
| N-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]-4-(thieno[2,3-d]pyrimidin-4-ylamino)-1H-pyrazole-5-carboxamide | 1489804: Inhibition of human FLT3 using EAIYAAPFAKKK as substrate preincubated for 20 mins followed by [gamma-33P]-ATP addition measure after 120 mins by filter binding method | ic50 | 0.0003 | uM |
| 8-(4-aminophenyl)-2-[3-methyl-4-(4-methylpiperazin-1-yl)anilino]pteridin-7-one | 1635671: Binding affinity to human partial length FLT3 D835V mutant (592 to 969 residues) expressed in mammalian expression system after 1 hr | kd | 0.0003 | uM |
| N-(2,4-dimethoxyphenyl)-4-(1H-indol-3-yl)pyrimidin-2-amine | 1927363: Binding affinity to human FLT3 assessed as inhibition constant | ki | 0.0003 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Sorafenib | increases response to substance, decreases reaction, increases phosphorylation, decreases activity, decreases phosphorylation | 5 |
| ponatinib | decreases activity, decreases reaction, increases phosphorylation, decreases phosphorylation | 4 |
| Arsenic Trioxide | decreases reaction, increases expression, affects binding, increases reaction, decreases phosphorylation (+1 more) | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| sodium arsenite | increases expression, increases phosphorylation | 2 |
| Semaxinib | decreases activity | 2 |
| Tretinoin | affects cotreatment, decreases expression, increases reaction, increases response to substance | 2 |
| 2-hydroxy-1-(2-((9-(4-methylcyclohexyl)-9H-pyrido(4’,3’-4,5)pyrrolo(2,3-d)pyrimidin-2-yl)amino)-7,8-dihydro-1,6-naphthyridin-6(5H)-yl)ethanone | decreases phosphorylation | 1 |
| pexidartinib | decreases activity | 1 |
| RGFP966 | affects reaction, decreases expression, decreases phosphorylation | 1 |
| bisphenol F | affects cotreatment, increases methylation | 1 |
| S63845 | decreases expression, increases reaction | 1 |
| parthenolide | increases reaction, decreases expression | 1 |
| fulvic acid | affects cotreatment, decreases reaction, increases expression | 1 |
| bisphenol A | increases expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| celastrol | decreases expression | 1 |
| bafilomycin A | increases degradation, decreases reaction, increases expression | 1 |
| midostaurin | decreases response to substance, decreases activity | 1 |
| romidepsin | decreases phosphorylation, increases reaction | 1 |
| gedunin | decreases expression | 1 |
| tanespimycin | decreases expression | 1 |
| SU 5614 | decreases activity | 1 |
| D-65476 | increases reaction, affects cotreatment, decreases expression | 1 |
| THRX 165724 | decreases phosphorylation | 1 |
| NSC 23766 | affects response to substance | 1 |
| palbociclib | affects response to substance, decreases expression, decreases phosphorylation | 1 |
| 5-((5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl)-N-(2-hydroxy-3-morpholin-4-ylpropyl)-2,4-dimethyl-1H-pyrrole-3-carboxamide | decreases phosphorylation | 1 |
ChEMBL screening assays
3132 unique, capped per target: 3096 binding, 24 functional, 8 admet, 4 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1003890 | Binding | Inhibition of Flt3 | Discovery of pyrrolopyridine-pyridone based inhibitors of Met kinase: synthesis, X-ray crystallographic analysis, and biological activities. — J Med Chem |
| CHEMBL1963779 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: FLT3 | PubChem BioAssay data set |
| CHEMBL3826089 | ADMET | Inhibition of FLT3 (unknown origin) | Discovery of a potent and highly selective transforming growth factor β receptor-associated kinase 1 (TAK1) inhibitor by structure based drug design (SBDD). — Bioorg Med Chem |
Cellosaurus cell lines
189 cell lines: 144 cancer cell line, 39 factor-dependent cell line, 4 embryonic stem cell, 2 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0064 | MV4-11 | Cancer cell line | Male |
| CVCL_0138 | ACH-2 | Cancer cell line | Female |
| CVCL_0207 | CCRF-CEM | Cancer cell line | Female |
| CVCL_0614 | Kasumi-6 | Cancer cell line | Male |
| CVCL_0R18 | CEM-TART clone 1A2 | Cancer cell line | Female |
| CVCL_0U11 | CEM/MX1 | Cancer cell line | Female |
| CVCL_1150 | CTV-1 | Cancer cell line | Male |
| CVCL_1B35 | CEM/VM-1 | Cancer cell line | Female |
| CVCL_1E04 | Rev-CEM | Cancer cell line | Female |
| CVCL_1G53 | CEM-GFP | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00199147 | PHASE4 | UNKNOWN | Efficacy of G-CSF-Priming in Elderly AML Patients |
| NCT00304447 | PHASE4 | COMPLETED | Study Evaluating the Effect of Corticosteroids on Mylotarg® Infusion-Related Adverse Events in Patients With Leukemia |
| NCT00464217 | PHASE4 | COMPLETED | Treatment of the Acute Myeloblastic Leukaemia in Patients Over 65 Years |
| NCT00487448 | PHASE4 | COMPLETED | SMD_FLAG-IDA_98: FLAG-IDA in Induction Treatment of High Risk Myelodysplastic Syndromes or Secondary Acute Myeloblastic Leukemia |
| NCT00488709 | PHASE4 | COMPLETED | Fludarabine, Cytarabine, Topotecan in Treating Patients With Relapsed or Refractory Acute Myeloid Leukemia |
| NCT00686543 | PHASE4 | COMPLETED | Oral Posaconazole in High Risk Patients With Gastrointestinal Dysfunction (Study P05115) |
| NCT01041040 | PHASE4 | COMPLETED | LAM07: Study to Analyze the Efficacy of a Risk Adapted Treatment Strategy, Including Gemtuzumab Ozogamicin (GO) During Consolidation, for Patients With Acute Myeloid Leukemia (AML) |
| NCT01198054 | PHASE4 | TERMINATED | LENA-LMA-5:Lenalidomide in Acute Myeloid Leukemia (AML) |
| NCT01200355 | PHASE4 | COMPLETED | Posaconazole Versus Micafungin for Prophylaxis Against Invasive Fungal Infections During Neutropenia in Patients Undergoing Chemotherapy for Acute Myelogenous Leukemia, Acute Lymphocytic Leukemia or Myelodysplastic Syndrome |
| NCT01347996 | PHASE4 | COMPLETED | Maintenance Therapy With Ceplene® (Histamine) and IL-2 on Immune Response and MRD in Acute Myeloid Leukemia |
| NCT01587430 | PHASE4 | UNKNOWN | 3 Anthracyclines, 2 Types of Consolidation With Different ARA-C Doses and Maintenance in Adult Acute Myeloid Leukemia |
| NCT01819792 | PHASE4 | COMPLETED | Respiratory Viral Infections During Acute Myeloid Leukemia (AML)Chemotherapy Related Aplasia |
| NCT02024308 | PHASE4 | UNKNOWN | AML1-ETO Acute Myeloid Leukemia With Fludarabine and Cytarabine Chemotherapy |
| NCT02027064 | PHASE4 | UNKNOWN | Interferon for the Intervention of Molecular Relapse in t (8; 21) AML After Allo-HSCT |
| NCT02277847 | PHASE4 | UNKNOWN | Idarubicin at Different Dosages as Induction Therapy for Newly Diagnosed Acute Myeloid Leukaemia |
| NCT02386800 | PHASE4 | ACTIVE_NOT_RECRUITING | CINC424A2X01B Rollover Protocol |
| NCT02926586 | PHASE4 | COMPLETED | Fludarabine and Cytarabine Versus High-dose Cytarabine for CBF-AML |
| NCT02933333 | PHASE4 | UNKNOWN | G-CSF Alone or Combination With GM-CSF on Prevention and Treatment of Infection in Children With Malignant Tumor |
| NCT03026842 | PHASE4 | UNKNOWN | Decitabine Versus Conventional Chemotherapy for Maintenance Therapy of Acute Myeloid Leukemia With t(8;21) |
| NCT03150134 | PHASE4 | UNKNOWN | Early Tapering of Immunosuppressive Agents to Immunomodulation to Improve Survival of AML Patients |
| NCT05144243 | PHASE4 | ACTIVE_NOT_RECRUITING | Study to Assess Adverse Events and Change in Disease State of Oral Venetoclax in Combination With Subcutaneous (SC) Azacitidine in Newly Diagnosed Adult Participants With Acute Myeloid Leukemia (AML) Who Are Ineligible for Intensive Chemotherapy in China |
| NCT06370000 | PHASE4 | RECRUITING | Oral Azacitidine in Transplant-Eligible Patients With Acute Myeloid Leukemia (AML) Suffering From Health-Inequality |
| NCT06571825 | PHASE4 | RECRUITING | RIC Allo-HSCT vs. Venetoclax-Based Consolidation in Elderly AML Patients After First CR |
| NCT07016165 | PHASE4 | RECRUITING | Ciprofloxacin vs Ceftazidime for Empirical Treatment of High-Risk Neutropenic Fever in Children With Hematologic Malignancies |
| NCT07044687 | PHASE4 | RECRUITING | Study to Assess Adverse Events and Change in Disease Activity of Oral Venetoclax in Combination With Subcutaneous (SC) or Intravenous (IV) Azacitidine in Newly Diagnosed Adult Participants With Acute Myeloid Leukemia (AML) Who Are Ineligible for Standard Induction Therapy in India |
| NCT07486713 | PHASE4 | RECRUITING | Olutasidenib DDI Study in Patients With IDH1 Mutation Positive Malignancies |
| NCT07561892 | PHASE4 | RECRUITING | Study of the Effectiveness and Safety of Daunorubicin /Idarubicin ± Silibinin in Treating Newly Diagnosed AML (Non-M3). |
| NCT00000589 | PHASE3 | COMPLETED | Trial to Reduce Alloimmunization to Platelets (TRAP) |
| NCT00044486 | PHASE3 | COMPLETED | Prophylaxis Trial of Posaconazole Versus Standard Azole Therapy for Neutropenic Patients (Study P01899) |
| NCT00093990 | PHASE3 | COMPLETED | Tipifarnib Versus Best Supportive Care in the Treatment of Newly Diagnosed Acute Myeloid Leukemia (AML) |
| NCT00125606 | PHASE3 | TERMINATED | Phase 3 Trial for AML Patients in CR2 Comparing 8Gy TBI /Fludarabine to Conditioning With TBI 12Gy/Cyclophosphamide |
| NCT00136084 | PHASE3 | COMPLETED | Treatment of Patients With Newly Diagnosed Acute Myeloid Leukemia or Myelodysplasia |
| NCT00146120 | PHASE3 | COMPLETED | Risk-Adapted Therapy of Acute Myeloid Leukemia of Adults (18-60 Years) According to the Cytogenetic Result |
| NCT00150878 | PHASE3 | TERMINATED | Standard vs. Reduced-Intensity Conditioning in Patients With Acute Myeloid Leukemia in First Remission |
| NCT00151255 | PHASE3 | COMPLETED | All-Trans Retinoic Acid in Combination With Standard Induction and Consolidation Therapy in Older Patients With Newly Diagnosed Acute Myeloid Leukemia |
| NCT00152139 | PHASE3 | COMPLETED | Stem Cell Transplantation for Patients With Hematologic Malignancies |
| NCT00152594 | PHASE3 | TERMINATED | Voriconazole or Placebo in the Prophylaxis of Lung Infiltrates in Patients Undergoing Induction Chemotherapy for Acute Myelogenous Leukemia |
| NCT00186966 | PHASE3 | COMPLETED | Treatment of Children and Adolescents With Refractory or Relapsed Acute Myeloid Leukemia |
| NCT00226512 | PHASE3 | WITHDRAWN | To Determine the Role of Adding Campath-1H or ATG Given In-vivo in Addition to Fludarabine and Low Dose Busulfex on Outcome in Patients Treated With Reduced Intensity Conditioning |
| NCT00260832 | PHASE3 | COMPLETED | Trial of Decitabine in Patients With Acute Myeloid Leukemia |
Related Atlas pages
- Associated diseases: leukemia, acute myeloid, susceptibility to, acute myeloid leukemia by FAB classification, colorectal carcinoma, acute promyelocytic leukemia, renal cell carcinoma, B-cell adult acute lymphocytic leukemia
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Gilteritinib, Midostaurin, Sorafenib, Pexidartinib, Nilotinib, Sunitinib, Lestaurtinib, Pacritinib, Quizartinib, Selumetinib, Tretinoin, Regorafenib
- Targeted by drugs: Cediranib, Ceritinib, Crenolanib, Dovitinib, Gilteritinib, Lestaurtinib, Linifanib, Midostaurin, Pacritinib, Pexidartinib, Quizartinib, Ruserontinib, Sitravatinib, Sorafenib, Sunitinib
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute lymphoblastic leukemia, acute myeloid leukemia, acute myeloid leukemia by FAB classification, acute myeloid leukemia with mutated NPM1, acute promyelocytic leukemia, atypical chronic myeloid leukemia, BCR-ABL1 negative, B-cell adult acute lymphocytic leukemia, cancer, childhood leukemia, childhood myelodysplastic syndrome, colorectal carcinoma, leukemia, leukemia, acute myeloid, susceptibility to, myelodysplastic syndrome, nonpapillary renal cell carcinoma, plasma cell myeloma, renal cell adenocarcinoma, renal cell carcinoma