FMC1
geneOn this page
Also known as HSPC268
Summary
FMC1 (formation of mitochondrial complex V assembly factor 1, HGNC:26946) is a protein-coding gene on chromosome 7q34, encoding Protein FMC1 homolog (Q96HJ9). Plays a role in the assembly/stability of the mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V).
Involved in mitochondrial proton-transporting ATP synthase complex assembly. Located in mitochondrion.
Source: NCBI Gene 154791 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 1 total — 1 likely-pathogenic
- MANE Select transcript:
NM_197964
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26946 |
| Approved symbol | FMC1 |
| Name | formation of mitochondrial complex V assembly factor 1 |
| Location | 7q34 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HSPC268 |
| Ensembl gene | ENSG00000164898 |
| Ensembl biotype | protein_coding |
| OMIM | 620766 |
| Entrez | 154791 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding_CDS_not_defined, 1 protein_coding
ENST00000297534, ENST00000468383, ENST00000481123, ENST00000482181, ENST00000488886
RefSeq mRNA: 1 — MANE Select: NM_197964
NM_197964
CCDS: CCDS5853
Canonical transcript exons
ENST00000297534 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001636858 | 139341337 | 139341522 |
| ENSE00001929279 | 139345501 | 139346328 |
Expression profiles
Bgee: expression breadth ubiquitous, 138 present calls, max score 98.42.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.4772 / max 100.5920, expressed in 1224 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 81444 | 17.0956 | 1808 |
| 81440 | 1.2169 | 619 |
| 81443 | 0.9811 | 628 |
| 81439 | 0.2791 | 144 |
Top tissues by expression
138 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 98.42 | gold quality |
| right testis | UBERON:0004534 | 98.15 | gold quality |
| testis | UBERON:0000473 | 97.31 | gold quality |
| apex of heart | UBERON:0002098 | 96.17 | gold quality |
| gastrocnemius | UBERON:0001388 | 94.88 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 94.84 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.74 | gold quality |
| muscle of leg | UBERON:0001383 | 94.21 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 93.74 | gold quality |
| right atrium auricular region | UBERON:0006631 | 93.44 | gold quality |
| heart | UBERON:0000948 | 93.31 | gold quality |
| pituitary gland | UBERON:0000007 | 92.96 | gold quality |
| adenohypophysis | UBERON:0002196 | 92.95 | gold quality |
| right lobe of liver | UBERON:0001114 | 92.79 | gold quality |
| substantia nigra | UBERON:0002038 | 92.05 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.94 | gold quality |
| putamen | UBERON:0001874 | 91.66 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.66 | gold quality |
| right adrenal gland | UBERON:0001233 | 91.60 | gold quality |
| lower esophagus | UBERON:0013473 | 91.59 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 91.59 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 91.50 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 91.39 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 91.25 | gold quality |
| left adrenal gland | UBERON:0001234 | 91.23 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 91.20 | gold quality |
| fundus of stomach | UBERON:0001160 | 91.17 | gold quality |
| caudate nucleus | UBERON:0001873 | 91.10 | gold quality |
| hypothalamus | UBERON:0001898 | 91.10 | gold quality |
| amygdala | UBERON:0001876 | 91.03 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-10 | yes | 30.90 |
| E-ANND-3 | yes | 16.95 |
| E-MTAB-6524 | no | 88.33 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
32 targeting FMC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-130A-3P | 99.90 | 73.31 | 1861 |
| HSA-MIR-130B-3P | 99.90 | 73.27 | 1850 |
| HSA-MIR-301A-3P | 99.90 | 73.15 | 1839 |
| HSA-MIR-301B-3P | 99.90 | 73.19 | 1836 |
| HSA-MIR-3666 | 99.90 | 73.24 | 1833 |
| HSA-MIR-4295 | 99.90 | 73.11 | 1838 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-4452 | 99.50 | 68.45 | 1493 |
| HSA-MIR-6080 | 99.43 | 69.43 | 373 |
| HSA-MIR-4797-5P | 99.39 | 68.01 | 1354 |
| HSA-MIR-4279 | 99.19 | 66.70 | 2437 |
| HSA-MIR-6504-3P | 99.17 | 69.31 | 2891 |
| HSA-MIR-10399-5P | 99.17 | 69.87 | 2610 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-628-3P | 99.04 | 68.37 | 814 |
| HSA-MIR-1909-5P | 98.94 | 64.01 | 484 |
| HSA-MIR-6761-5P | 98.71 | 68.03 | 1504 |
| HSA-MIR-619-5P | 98.57 | 64.97 | 1988 |
| HSA-MIR-4511 | 98.32 | 67.97 | 1500 |
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:ch1073-314i13.4 | ENSDARG00000074266 |
| mus_musculus | Fmc1 | ENSMUSG00000019689 |
| rattus_norvegicus | Fmc1 | ENSRNOG00000005618 |
| drosophila_melanogaster | CG34117 | FBGN0083953 |
| caenorhabditis_elegans | WBGENE00016209 |
Protein
Protein identifiers
Protein FMC1 homolog — Q96HJ9 (reviewed: Q96HJ9)
Alternative names: ATP synthase assembly factor FMC1, mitochondrial, Formation of mitochondrial complex V assembly factor 1 homolog
All UniProt accessions (1): Q96HJ9
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in the assembly/stability of the mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V).
Subunit / interactions. Interacts with ATPAF2.
Subcellular location. Mitochondrion.
Similarity. Belongs to the FMC1 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96HJ9-1 | 1 | yes |
| Q96HJ9-2 | 2 |
RefSeq proteins (1): NP_932068* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR037667 | FMC1_homologue | Family |
Pfam: PF13233
UniProt features (4 total): chain 1, region of interest 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96HJ9-F1 | 86.24 | 0.57 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 156 (showing top):
GOBP_BEHAVIOR, TGCGCANK_UNKNOWN, GOBP_NEGATIVE_REGULATION_OF_LIPID_METABOLIC_PROCESS, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, GOBP_NEUROGENESIS, GOBP_REGULATION_OF_LIPID_METABOLIC_PROCESS, MCBRYAN_PUBERTAL_BREAST_4_5WK_DN, GOBP_REGULATION_OF_CATABOLIC_PROCESS, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13, GOBP_LIPID_METABOLIC_PROCESS, WHN_B, GOBP_NEGATIVE_REGULATION_OF_LIPID_CATABOLIC_PROCESS, GOBP_DOPAMINERGIC_NEURON_DIFFERENTIATION
GO Biological Process (8): apoptotic mitochondrial changes (GO:0008637), response to toxic substance (GO:0009636), mitochondrial proton-transporting ATP synthase complex assembly (GO:0033615), negative regulation of lipid catabolic process (GO:0050995), regulation of type B pancreatic cell proliferation (GO:0061469), motor behavior (GO:0061744), dopaminergic neuron differentiation (GO:0071542), mitochondrion organization (GO:0007005)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (1): mitochondrion (GO:0005739)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| apoptotic process | 1 |
| mitochondrion organization | 1 |
| response to chemical | 1 |
| mitochondrion | 1 |
| mitochondrial respiratory chain complex assembly | 1 |
| proton-transporting ATP synthase complex assembly | 1 |
| negative regulation of catabolic process | 1 |
| lipid catabolic process | 1 |
| negative regulation of lipid metabolic process | 1 |
| regulation of lipid catabolic process | 1 |
| type B pancreatic cell proliferation | 1 |
| regulation of epithelial cell proliferation | 1 |
| behavior | 1 |
| neuron differentiation | 1 |
| organelle organization | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
808 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FMC1 | LYRM9 | A8MSI8 | 601 |
| FMC1 | LYRM1 | O43325 | 582 |
| FMC1 | LYRM2 | Q9NU23 | 580 |
| FMC1 | ETFRF1 | Q6IPR1 | 578 |
| FMC1 | SDHAF1 | A6NFY7 | 526 |
| FMC1 | LYRM7 | Q5U5X0 | 507 |
| FMC1 | SDHAF3 | Q9NRP4 | 449 |
| FMC1 | CLEC2L | P0C7M8 | 446 |
| FMC1 | LYRM4 | Q9HD34 | 431 |
| FMC1 | KLRG2 | A4D1S0 | 419 |
| FMC1 | UBN2 | Q6ZU65 | 377 |
| FMC1 | NDUFB9 | Q9Y6M9 | 370 |
| FMC1 | IFT56 | A0AVF1 | 370 |
| FMC1 | TMEM186 | Q96B77 | 358 |
| FMC1 | TRMT5 | Q32P41 | 347 |
| FMC1 | TIMM29 | Q9BSF4 | 347 |
IntAct
43 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DLD | PDHX | psi-mi:“MI:0914”(association) | 0.880 |
| GRPEL2 | DBT | psi-mi:“MI:0914”(association) | 0.710 |
| FECH | PGRMC1 | psi-mi:“MI:0914”(association) | 0.700 |
| KLHL22 | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| COX4I1 | DBT | psi-mi:“MI:0914”(association) | 0.560 |
| ATPAF2 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.530 |
| OXLD1 | NUDT19 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC1A1 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| FECH | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| LIG3 | NDUFS6 | psi-mi:“MI:0914”(association) | 0.350 |
| SSH3 | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| ATP5F1A | PMPCB | psi-mi:“MI:0914”(association) | 0.350 |
| FMC1 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.350 |
| ATP5F1A | NRDC | psi-mi:“MI:0914”(association) | 0.350 |
| FMC1 | DNM1L | psi-mi:“MI:0914”(association) | 0.350 |
| FMC1 | POLRMT | psi-mi:“MI:0914”(association) | 0.350 |
| RPS6KB2 | SRSF1 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A6 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD10 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| CALML3 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| MTRF1 | MEIS1 | psi-mi:“MI:0914”(association) | 0.350 |
| OXLD1 | PRORP | psi-mi:“MI:0914”(association) | 0.350 |
| GIP | GNPAT | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (96): C7orf55 (Affinity Capture-MS), C7orf55 (Affinity Capture-MS), C7orf55 (Affinity Capture-MS), C7orf55 (Affinity Capture-MS), C7orf55 (Affinity Capture-MS), C7orf55-LUC7L2 (Affinity Capture-MS), ATPAF2 (Affinity Capture-MS), MRPL57 (Affinity Capture-MS), C7orf55-LUC7L2 (Affinity Capture-MS), NT5DC2 (Affinity Capture-MS), CYCS (Affinity Capture-MS), CLPX (Affinity Capture-MS), POLDIP2 (Affinity Capture-MS), SLC25A51 (Affinity Capture-MS), MRPL46 (Affinity Capture-MS)
ESM2 similar proteins: A3KNJ8, A3LNG8, A5DH70, A5DY61, A6S5Q0, A7EDS9, A7S1A4, A7S1H9, A7TI92, A9UL63, A9UMQ3, B5FXA0, B5FYC7, B5X5U9, B5XCZ6, B8JLQ0, B9WD12, C4R7H7, C4Y4R9, C5DEI4, C5DR94, C5MJD6, C7ZKY9, C9SBR9, D1Z4E1, G2TRM0, G2TRP8, O43325, O60068, P82116, Q04401, Q0UIG9, Q503U1, Q54F42, Q5A7N3, Q6BQH4, Q6CHK8, Q6CTI7, Q6CUY0, Q6FMR7
Diamond homologs: A7S1A4, A9UL63, Q3SZA2, Q4G012, Q8MNU8, Q96HJ9, Q9CR13
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 51 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Mitochondrial protein degradation | 6 | 18.0× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2503066 | NM_197964.5(FMC1):c.104A>G (p.Tyr35Cys) | Likely pathogenic |
SpliceAI
358 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:139341521:GG:G | donor_gain | 1.0000 |
| 7:139341522:GG:G | donor_gain | 1.0000 |
| 7:139341523:G:GA | donor_loss | 1.0000 |
| 7:139345620:GG:G | donor_gain | 1.0000 |
| 7:139345621:GG:G | donor_gain | 1.0000 |
| 7:139341523:G:GG | donor_gain | 0.9900 |
| 7:139345659:TCTC:T | donor_gain | 0.9900 |
| 7:139341505:GCTT:G | donor_gain | 0.9800 |
| 7:139345496:TCTA:T | acceptor_loss | 0.9800 |
| 7:139345498:TA:T | acceptor_loss | 0.9800 |
| 7:139345499:AGGT:A | acceptor_loss | 0.9800 |
| 7:139345606:G:GT | donor_gain | 0.9800 |
| 7:139341519:TCGG:T | donor_gain | 0.9700 |
| 7:139345634:TGGAG:T | donor_gain | 0.9700 |
| 7:139345635:GGAGG:G | donor_gain | 0.9700 |
| 7:139341501:G:GT | donor_gain | 0.9600 |
| 7:139345617:C:T | donor_gain | 0.9600 |
| 7:139345686:G:T | donor_gain | 0.9600 |
| 7:139345761:A:AG | donor_gain | 0.9500 |
| 7:139341567:G:GT | donor_gain | 0.9400 |
| 7:139345498:TAGG:T | acceptor_gain | 0.9400 |
| 7:139345499:A:AG | acceptor_gain | 0.9400 |
| 7:139345500:G:GG | acceptor_gain | 0.9400 |
| 7:139345740:A:T | donor_gain | 0.9400 |
| 7:139341563:G:GT | donor_gain | 0.9300 |
| 7:139341518:ATCGG:A | donor_gain | 0.9200 |
| 7:139341528:G:GT | donor_gain | 0.9200 |
| 7:139345497:CTAGG:C | acceptor_gain | 0.9200 |
| 7:139341564:G:T | donor_gain | 0.9100 |
| 7:139345499:AGG:A | acceptor_gain | 0.9000 |
AlphaMissense
709 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:139345549:G:C | A63P | 0.980 |
| 7:139345568:T:C | L69P | 0.968 |
| 7:139345609:T:C | F83L | 0.964 |
| 7:139345611:T:A | F83L | 0.964 |
| 7:139345611:T:G | F83L | 0.964 |
| 7:139345576:A:C | S72R | 0.961 |
| 7:139345578:C:A | S72R | 0.961 |
| 7:139345578:C:G | S72R | 0.961 |
| 7:139341508:T:C | F42L | 0.956 |
| 7:139341510:C:A | F42L | 0.956 |
| 7:139341510:C:G | F42L | 0.956 |
| 7:139345646:C:A | A95D | 0.955 |
| 7:139345558:T:G | Y66D | 0.949 |
| 7:139345550:C:A | A63D | 0.945 |
| 7:139345583:G:C | R74P | 0.935 |
| 7:139341433:G:A | E17K | 0.932 |
| 7:139345543:T:C | F61L | 0.926 |
| 7:139345545:C:A | F61L | 0.926 |
| 7:139345545:C:G | F61L | 0.926 |
| 7:139345519:T:C | C53R | 0.925 |
| 7:139345571:T:C | L70P | 0.921 |
| 7:139345661:T:C | L100P | 0.916 |
| 7:139345505:C:T | T48I | 0.915 |
| 7:139345521:C:G | C53W | 0.910 |
| 7:139345598:T:C | L79P | 0.910 |
| 7:139341425:T:A | L14H | 0.907 |
| 7:139341425:T:C | L14P | 0.907 |
| 7:139345520:G:A | C53Y | 0.907 |
| 7:139345577:G:T | S72I | 0.903 |
| 7:139345645:G:C | A95P | 0.902 |
dbSNP variants (sampled 300 via entrez): RS1000087403 (7:139339108 C>T), RS1000174566 (7:139339878 G>A), RS1000404486 (7:139345066 C>T), RS1000585773 (7:139342477 T>TG), RS1000614876 (7:139340084 T>C), RS1000737181 (7:139344804 G>A), RS1001216087 (7:139338730 A>G), RS1001705626 (7:139340270 G>A,T), RS1001777698 (7:139340457 C>A), RS1001826239 (7:139343467 T>C), RS1001918871 (7:139345606 G>C), RS1002427465 (7:139341923 C>A), RS1002782368 (7:139341089 C>G,T), RS1002947813 (7:139346819 T>C), RS1003390611 (7:139340755 C>G,T)
Disease associations
OMIM: gene MIM:620766 | disease phenotypes: MIM:276900
GenCC curated gene-disease
Mondo (1): Usher syndrome (MONDO:0019501)
Orphanet (1): Usher syndrome (Orphanet:886)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002875_124 | Diisocyanate-induced asthma | 1.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006995 | response to diisocyanate |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D052245 | Usher Syndromes | C09.218.458.341.186.500.500; C09.218.458.341.887.886; C10.597.751.418.341.186.500.500; C10.597.751.418.341.887.886; C10.597.751.941.162.625.500; C11.768.585.658.500.813; C11.966.075.375.500; C16.131.077.299.500; C16.320.290.684.500; C23.888.592.763.393.341.887.886 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 5 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| beauvericin | affects cotreatment, increases expression | 1 |
| bafilomycin A1 | decreases expression, decreases reaction | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| enniatins | affects cotreatment, increases expression | 1 |
| entinostat | decreases expression | 1 |
| K 7174 | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Carbonyl Cyanide m-Chlorophenyl Hydrazone | decreases expression, decreases reaction | 1 |
| Cisplatin | decreases expression | 1 |
| Estradiol | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, decreases expression, increases abundance | 1 |
| Quercetin | decreases expression | 1 |
| Rotenone | increases expression, increases reaction, decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Particulate Matter | affects cotreatment, decreases expression, increases abundance | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B5JR | HAP1 C7orf55 (-) 2 | Cancer cell line | Male |
| CVCL_XM39 | HAP1 C7orf55 (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
18 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT02065011 | PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Determine the Long-Term Safety, Tolerability and Biological Activity of SAR421869 in Patients With Usher Syndrome Type 1B |
| NCT01505062 | PHASE1/PHASE2 | TERMINATED | Study of SAR421869 in Participants With Retinitis Pigmentosa Associated With Usher Syndrome Type 1B |
| NCT04355689 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Safety and Efficacy of NPI-001 Tablets for RP Associated With Usher Syndrome |
| NCT06789445 | PHASE1/PHASE2 | RECRUITING | A Study to Investigate the Safety of OpCT-001 in Adults Who Have Primary Photoreceptor Disease (CLARICO) |
| NCT00004345 | Not specified | TERMINATED | Study of Dietary N-3 Fatty Acids in Patients With Retinitis Pigmentosa and Usher Syndrome |
| NCT00016471 | Not specified | COMPLETED | A Genetic Analysis of Usher Syndrome in Ashkenazi Jews |
| NCT00106743 | Not specified | COMPLETED | Natural History and Genetic Studies of Usher Syndrome |
| NCT01954953 | Not specified | UNKNOWN | Clinical and Genetic Examination of Usher Syndrome Patients’ Cohort in Europe |
| NCT02435940 | Not specified | RECRUITING | Inherited Retinal Degenerative Disease Registry |
| NCT03319524 | Not specified | COMPLETED | Clinical and Genetic Testing of Patients With Usher Syndrome |
| NCT03901391 | Not specified | COMPLETED | Prospective Open Clinical and Genetic Study of Patients With Retinitis Pigmentosa |
| NCT03990727 | Not specified | UNKNOWN | Phenotype Correlates Genotype of Inherited Retina Dystrophies, Retinitis Pigmentosa, Con>Rod Dystrophies. |
| NCT04665726 | Not specified | RECRUITING | Natural History Study of Usher Syndrome ( Light4Deaf ) |
| NCT04906135 | Not specified | COMPLETED | Auditory Neural Function in Implanted Patients With Usher Syndrome |
| NCT05355415 | Not specified | RECRUITING | Adaptive Optics Imaging of Outer Retinal Diseases |
| NCT07278843 | Not specified | RECRUITING | Natural History of Photoreceptor Degeneration in USH1B: Clinical Parameters and Validation of Functional Vision Tests in MYO7A |
| NCT07548944 | Not specified | RECRUITING | Observational Study to Investigate the Short-term Effects of Transcorneal Electrical Stimulation on Visual Performance |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Usher syndrome