FNDC1-IT1

Summary

FNDC1-IT1 (FNDC1 intronic transcript 1, HGNC:41460) is a long non-coding RNA gene on chromosome 6q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41460
Approved symbol	FNDC1-IT1
Name	FNDC1 intronic transcript 1
Location	6q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235086
Ensembl biotype	lncRNA
Entrez	100874312
RNAcentral	URS0002123164 — lncRNA, 550 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419703

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419703 — 2 exons

Exon	Start	End
ENSE00001777125	159240786	159241157
ENSE00001794743	159243186	159243329

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 94.73.

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.73	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.87	gold quality
ventricular zone	UBERON:0003053	67.75	gold quality
calcaneal tendon	UBERON:0003701	66.84	gold quality
smooth muscle tissue	UBERON:0001135	62.27	gold quality
lymph node	UBERON:0000029	59.69	gold quality
gall bladder	UBERON:0002110	58.40	gold quality
thyroid gland	UBERON:0002046	58.28	gold quality
pancreas	UBERON:0001264	57.94	gold quality
left lobe of thyroid gland	UBERON:0001120	57.72	gold quality
right lobe of thyroid gland	UBERON:0001119	57.69	gold quality
body of pancreas	UBERON:0001150	57.65	gold quality
monocyte	CL:0000576	57.16	gold quality
tibial nerve	UBERON:0001323	56.61	gold quality
endometrium	UBERON:0001295	55.60	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.49	gold quality
prefrontal cortex	UBERON:0000451	54.91	gold quality
muscle of leg	UBERON:0001383	53.89	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.69	gold quality
vermiform appendix	UBERON:0001154	53.54	gold quality
blood	UBERON:0000178	53.23	silver quality
Ammon’s horn	UBERON:0001954	52.05	gold quality
tonsil	UBERON:0002372	51.38	gold quality
colon	UBERON:0001155	50.35	gold quality
adrenal tissue	UBERON:0018303	50.35	gold quality
intestine	UBERON:0000160	50.03	gold quality
gastrocnemius	UBERON:0001388	49.94	gold quality
descending thoracic aorta	UBERON:0002345	49.45	gold quality
kidney	UBERON:0002113	49.22	gold quality
heart left ventricle	UBERON:0002084	49.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.