FNDC4
gene geneOn this page
Also known as FLJ22362FRCP1
Summary
FNDC4 (fibronectin type III domain containing 4, HGNC:20239) is a protein-coding gene on chromosome 2p23.3, encoding Fibronectin type III domain-containing protein 4 (Q9H6D8). Has anti-inflammatory properties.
Involved in response to transforming growth factor beta. Predicted to be located in endoplasmic reticulum; extracellular space; and plasma membrane.
Source: NCBI Gene 64838 — RefSeq curated summary.
At a glance
- GWAS associations: 38
- Clinical variants (ClinVar): 21 total
- MANE Select transcript:
NM_022823
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20239 |
| Approved symbol | FNDC4 |
| Name | fibronectin type III domain containing 4 |
| Location | 2p23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22362, FRCP1 |
| Ensembl gene | ENSG00000115226 |
| Ensembl biotype | protein_coding |
| OMIM | 611905 |
| Entrez | 64838 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 4 protein_coding, 2 retained_intron
ENST00000264703, ENST00000476197, ENST00000491414, ENST00000934124, ENST00000934125, ENST00000951222
RefSeq mRNA: 1 — MANE Select: NM_022823
NM_022823
CCDS: CCDS1756
Canonical transcript exons
ENST00000264703 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000809192 | 27492666 | 27492790 |
| ENSE00000963044 | 27491883 | 27492478 |
| ENSE00001348754 | 27494878 | 27495200 |
| ENSE00003478690 | 27494547 | 27494703 |
| ENSE00003515631 | 27493389 | 27493478 |
| ENSE00003615252 | 27493930 | 27494134 |
| ENSE00003686111 | 27494351 | 27494466 |
Expression profiles
Bgee: expression breadth ubiquitous, 208 present calls, max score 98.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.6875 / max 193.9208, expressed in 1282 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 27515 | 7.9840 | 1276 |
| 202128 | 0.3764 | 211 |
| 27512 | 0.1506 | 51 |
| 27516 | 0.0928 | 27 |
| 27514 | 0.0629 | 27 |
| 27513 | 0.0209 | 9 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left adrenal gland cortex | UBERON:0035825 | 98.00 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.87 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.66 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.05 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.00 | gold quality |
| right lobe of liver | UBERON:0001114 | 96.10 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.56 | gold quality |
| adrenal gland | UBERON:0002369 | 95.40 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 94.92 | gold quality |
| cingulate cortex | UBERON:0003027 | 94.90 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.84 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 94.44 | gold quality |
| cortical plate | UBERON:0005343 | 93.44 | gold quality |
| neocortex | UBERON:0001950 | 93.41 | gold quality |
| frontal cortex | UBERON:0001870 | 93.32 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.31 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 93.10 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.09 | gold quality |
| caudate nucleus | UBERON:0001873 | 92.90 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 92.77 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 92.58 | gold quality |
| left ovary | UBERON:0002119 | 92.54 | gold quality |
| cerebellar cortex | UBERON:0002129 | 92.53 | gold quality |
| amygdala | UBERON:0001876 | 92.52 | gold quality |
| cerebral cortex | UBERON:0000956 | 92.00 | gold quality |
| putamen | UBERON:0001874 | 91.94 | gold quality |
| telencephalon | UBERON:0001893 | 91.58 | gold quality |
| cerebellum | UBERON:0002037 | 91.33 | gold quality |
| liver | UBERON:0002107 | 91.23 | gold quality |
| right ovary | UBERON:0002118 | 91.21 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.62 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
34 targeting FNDC4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-4671-3P | 99.88 | 72.46 | 1045 |
| HSA-MIR-3151-5P | 99.86 | 63.83 | 1069 |
| HSA-MIR-3913-5P | 99.78 | 67.26 | 968 |
| HSA-MIR-7-5P | 99.67 | 70.53 | 1809 |
| HSA-MIR-3122 | 99.50 | 66.33 | 821 |
| HSA-MIR-548B-3P | 99.38 | 67.26 | 1000 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
| HSA-MIR-4324 | 99.04 | 70.14 | 1569 |
| HSA-MIR-2355-5P | 98.83 | 65.51 | 1589 |
| HSA-MIR-331-3P | 98.76 | 64.91 | 793 |
| HSA-MIR-583 | 98.71 | 67.44 | 1791 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
| HSA-MIR-6838-3P | 98.40 | 65.88 | 559 |
| HSA-MIR-1233-5P | 98.19 | 66.71 | 1201 |
| HSA-MIR-6778-5P | 98.19 | 66.59 | 1239 |
| HSA-MIR-6881-5P | 98.16 | 67.38 | 665 |
| HSA-MIR-3921 | 97.81 | 67.45 | 1431 |
| HSA-MIR-144-5P | 97.66 | 69.90 | 531 |
| HSA-MIR-296-5P | 97.61 | 64.02 | 851 |
| HSA-MIR-4314 | 97.50 | 67.30 | 1369 |
| HSA-MIR-2467-5P | 97.36 | 67.71 | 991 |
| HSA-MIR-4653-5P | 97.22 | 67.72 | 1429 |
| HSA-MIR-6841-5P | 97.19 | 67.29 | 409 |
| HSA-MIR-3649 | 96.85 | 64.10 | 340 |
Literature-anchored findings (GeneRIF, showing 8)
- Reports the cloning, expression and subcellular localization of the related mouse protein. (PMID:12384288)
- FNDC4 as a factor with direct therapeutic potential in inflammatory bowel disease and possibly other inflammatory diseases. (PMID:27066907)
- The novel adipokine FNDC4 reduces lipogenesis and increases fat browning in human visceral adipocytes. (PMID:32407726)
- Orphan GPR116 mediates the insulin sensitizing effects of the hepatokine FNDC4 in adipose tissue. (PMID:34016966)
- FNDC4 and FNDC5 reduce SARS-CoV-2 entry points and spike glycoprotein S1-induced pyroptosis, apoptosis, and necroptosis in human adipocytes. (PMID:34465884)
- Irisin and the fibronectin type III domain-containing family: structure, signaling and role in female reproduction. (PMID:35521900)
- FNDC4 reduces inflammation, proliferation, invasion and migration of rheumatoid synovial cells by inhibiting CCL2/ERK signaling. (PMID:38181585)
- FNDC4 reduces hepatocyte inflammatory cell death via AMPKalpha in metabolic dysfunction-associated steatotic liver disease. (PMID:39173437)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Fndc4 | ENSMUSG00000038552 |
| rattus_norvegicus | Fndc4 | ENSRNOG00000051056 |
Paralogs (1): FNDC5 (ENSG00000160097)
Protein
Protein identifiers
Fibronectin type III domain-containing protein 4 — Q9H6D8 (reviewed: Q9H6D8)
Alternative names: Fibronectin type III repeat-containing protein 1
All UniProt accessions (1): Q9H6D8
UniProt curated annotations — full annotation on UniProt →
Function. Has anti-inflammatory properties. In the colon, acts on macrophages to down-regulate inflammation. May suppress osteoclastogenesis and mature osteoclast resorptive function. In white adipose tissue, decreases local inflammation, via interaction with GPR116. Also required for proper systemic glucose tolerance, specifically sensitizing white adipocytes to insulin and promoting glucose uptake. The insulin sensitizing function in adipose tissue is mediated by interaction with ADGRF5/GPR116 and activation of cAMP signaling.
Subcellular location. Membrane Secreted.
Tissue specificity. Highly expressed in the liver and the brain, including in the cortex, hypothalamus and hippocampus. Also expressed in adipose tissue.
Induction. Up-regulated by inflammation in the intestine. Up-regulated by TGFB1 in a colorectal adenocarcinoma cell line.
RefSeq proteins (1): NP_073734* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003961 | FN3_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR052120 | FNDC_type_III_4/5 | Family |
Pfam: PF00041
UniProt features (13 total): glycosylation site 3, chain 2, topological domain 2, region of interest 2, signal peptide 1, transmembrane region 1, domain 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H6D8-F1 | 70.27 | 0.35 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (3): 52, 97, 147
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 78 (showing top):
GOBP_INFLAMMATORY_RESPONSE, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_RESPONSE_TO_TRANSFORMING_GROWTH_FACTOR_BETA, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, GOBP_NEGATIVE_REGULATION_OF_DEFENSE_RESPONSE, LASTOWSKA_COAMPLIFIED_WITH_MYCN, GOBP_NEGATIVE_REGULATION_OF_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_GROWTH_FACTOR, GOBP_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE, GOBP_REGULATION_OF_DEFENSE_RESPONSE, CUI_TCF21_TARGETS_2_UP
GO Biological Process (2): negative regulation of inflammatory response (GO:0050728), response to transforming growth factor beta (GO:0071559)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): obsolete extracellular space (GO:0005615), endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), extracellular region (GO:0005576), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| inflammatory response | 1 |
| negative regulation of defense response | 1 |
| negative regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| response to growth factor | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
572 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FNDC4 | FN1 | P02751 | 643 |
| FNDC4 | ADGRF5 | Q8IZF2 | 633 |
| FNDC4 | ZNF512 | Q96ME7 | 594 |
| FNDC4 | EIF2B4 | Q9UI10 | 584 |
| FNDC4 | SPATA31H1 | Q68DN1 | 570 |
| FNDC4 | KRTCAP3 | Q53RY4 | 565 |
| FNDC4 | ATRAID | Q6UW56 | 557 |
| FNDC4 | CCDC121 | Q6ZUS5 | 542 |
| FNDC4 | SNX17 | Q15036 | 541 |
| FNDC4 | CCDC61 | Q9Y6R9 | 536 |
| FNDC4 | NRBP1 | Q9UHY1 | 512 |
| FNDC4 | PINLYP | A6NC86 | 505 |
| FNDC4 | FNDC3A | Q9Y2H6 | 505 |
| FNDC4 | GTF3C2 | Q8WUA4 | 469 |
| FNDC4 | HIC2 | Q96JB3 | 462 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FNDC4 | POLR2G | psi-mi:“MI:0915”(physical association) | 0.370 |
| FNDC4 | MT-ND2 | psi-mi:“MI:0914”(association) | 0.350 |
| FNDC4 | NDUFB3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (39): SAFB2 (Affinity Capture-MS), GHITM (Affinity Capture-MS), AGPAT3 (Affinity Capture-MS), LIMA1 (Affinity Capture-MS), GALNT11 (Affinity Capture-MS), TRPM4 (Affinity Capture-MS), SLC9A6 (Affinity Capture-MS), CAV1 (Affinity Capture-MS), NDUFB3 (Affinity Capture-MS), INTS7 (Affinity Capture-MS), PPP1R10 (Affinity Capture-MS), MPRIP (Affinity Capture-MS), ND5 (Affinity Capture-MS), ALG10 (Affinity Capture-MS), HLA-DRB1 (Affinity Capture-MS)
ESM2 similar proteins: A6NLX4, A6QNY1, A6QPL2, A9CBA0, B2RTN2, D3ZF92, O43278, O75509, O88472, P30203, P98154, P98162, Q1JQE1, Q1RMT9, Q29RT9, Q3U515, Q56A20, Q5BIR3, Q5HZW5, Q5RCS3, Q5XIX0, Q61003, Q64322, Q6AXU5, Q6UWV7, Q7TMJ8, Q7TQH7, Q7Z4F1, Q86T13, Q86XT9, Q8BH27, Q8BSU2, Q8CB67, Q8TEF2, Q8VCP9, Q91ZV2, Q91ZV3, Q921R4, Q96FE7, Q96PD2
Diamond homologs: A6QPL2, O18016, O18023, Q1L867, Q3TR08, Q8K3V5, Q8K4Z2, Q8NAU1, Q8WZ42, Q98949, Q9H6D8, B0V2N1, F1NWE3, G5EF96, Q13332, Q64605, Q8AV57, P16621
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
21 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 15 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
895 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:27492476:TTTC:T | acceptor_loss | 1.0000 |
| 2:27492477:TTCTG:T | acceptor_loss | 1.0000 |
| 2:27492478:TC:T | acceptor_loss | 1.0000 |
| 2:27492479:C:CC | acceptor_gain | 1.0000 |
| 2:27492479:CTGT:C | acceptor_loss | 1.0000 |
| 2:27492687:T:TA | donor_gain | 1.0000 |
| 2:27492688:C:A | donor_gain | 1.0000 |
| 2:27492788:CAG:C | acceptor_gain | 1.0000 |
| 2:27492791:C:CC | acceptor_gain | 1.0000 |
| 2:27493383:A:AC | donor_gain | 1.0000 |
| 2:27493384:C:CC | donor_gain | 1.0000 |
| 2:27493385:TCAC:T | donor_loss | 1.0000 |
| 2:27493386:CAC:C | donor_loss | 1.0000 |
| 2:27493387:A:AC | donor_gain | 1.0000 |
| 2:27493387:ACCAG:A | donor_gain | 1.0000 |
| 2:27493388:C:CC | donor_gain | 1.0000 |
| 2:27493388:CCAG:C | donor_gain | 1.0000 |
| 2:27493388:CCAGC:C | donor_gain | 1.0000 |
| 2:27493407:C:CT | donor_gain | 1.0000 |
| 2:27493427:T:TA | donor_gain | 1.0000 |
| 2:27493428:C:A | donor_gain | 1.0000 |
| 2:27493475:TCAC:T | acceptor_gain | 1.0000 |
| 2:27493476:CACC:C | acceptor_gain | 1.0000 |
| 2:27493479:C:CA | acceptor_loss | 1.0000 |
| 2:27493479:C:CC | acceptor_gain | 1.0000 |
| 2:27494349:A:AC | donor_gain | 1.0000 |
| 2:27494350:C:CC | donor_gain | 1.0000 |
| 2:27494350:CTTG:C | donor_gain | 1.0000 |
| 2:27494462:CCGGT:C | acceptor_gain | 1.0000 |
| 2:27494463:CGGT:C | acceptor_gain | 1.0000 |
AlphaMissense
1498 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:27493395:A:G | W180R | 1.000 |
| 2:27493395:A:T | W180R | 1.000 |
| 2:27494399:C:A | W67C | 1.000 |
| 2:27494399:C:G | W67C | 1.000 |
| 2:27494401:A:G | W67R | 0.999 |
| 2:27494401:A:T | W67R | 0.999 |
| 2:27492774:G:C | F187L | 0.998 |
| 2:27492774:G:T | F187L | 0.998 |
| 2:27492776:A:G | F187L | 0.998 |
| 2:27494400:C:G | W67S | 0.998 |
| 2:27494412:G:T | A63D | 0.998 |
| 2:27493980:A:G | F135S | 0.997 |
| 2:27494368:A:C | Y78D | 0.997 |
| 2:27494436:A:T | V55D | 0.997 |
| 2:27493980:A:C | F135C | 0.996 |
| 2:27494361:A:T | I80N | 0.996 |
| 2:27494370:C:T | G77D | 0.996 |
| 2:27494400:C:A | W67L | 0.996 |
| 2:27493979:G:C | F135L | 0.995 |
| 2:27493979:G:T | F135L | 0.995 |
| 2:27493981:A:G | F135L | 0.995 |
| 2:27494066:C:A | W106C | 0.995 |
| 2:27494066:C:G | W106C | 0.995 |
| 2:27494416:A:G | S62P | 0.995 |
| 2:27492784:A:T | I184N | 0.994 |
| 2:27494406:A:T | V65E | 0.994 |
| 2:27492750:C:A | K195N | 0.993 |
| 2:27492750:C:G | K195N | 0.993 |
| 2:27492775:A:G | F187S | 0.993 |
| 2:27494070:A:T | L105H | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000571428 (2:27492517 G>C), RS1001692053 (2:27495844 G>A,T), RS1001797559 (2:27497146 G>A), RS1002560298 (2:27496293 G>T), RS1002694619 (2:27495977 T>C), RS1003144153 (2:27492847 C>A), RS1003562709 (2:27495216 C>T), RS1003708065 (2:27494889 C>A,T), RS1004765645 (2:27496328 T>C), RS1005637442 (2:27494914 G>A,C), RS1005733035 (2:27494905 C>A), RS1005764269 (2:27495231 C>G), RS1006001097 (2:27495078 C>T), RS1007502218 (2:27495330 AC>A), RS1007824753 (2:27491673 T>A,C)
Disease associations
OMIM: gene MIM:611905 | disease phenotypes: MIM:615630, MIM:616394
GenCC curated gene-disease
Mondo (2): short-rib thoracic dysplasia 10 with or without polydactyly (MONDO:0014284), retinitis pigmentosa 71 (MONDO:0014618)
Orphanet (2): Jeune syndrome (Orphanet:474), Retinitis pigmentosa (Orphanet:791)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
38 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000649_21 | Chronic kidney disease | 3.000000e-14 |
| GCST000769_3 | Calcium levels | 7.000000e-06 |
| GCST001381_11 | Menopause (age at onset) | 2.000000e-12 |
| GCST001698_12 | Serum total protein levels | 4.000000e-06 |
| GCST001698_9 | Serum total protein levels | 6.000000e-08 |
| GCST001699_7 | Serum albumin levels | 3.000000e-14 |
| GCST001699_9 | Serum albumin levels | 2.000000e-08 |
| GCST001905_4 | Hypertriglyceridemia | 2.000000e-13 |
| GCST002650_1 | Coffee consumption (cups per day) | 7.000000e-08 |
| GCST004131_72 | Inflammatory bowel disease | 1.000000e-07 |
| GCST004132_64 | Crohn’s disease | 6.000000e-11 |
| GCST009391_1135 | Metabolite levels | 1.000000e-09 |
| GCST009391_1193 | Metabolite levels | 8.000000e-12 |
| GCST009391_1334 | Metabolite levels | 7.000000e-08 |
| GCST009391_134 | Metabolite levels | 5.000000e-06 |
| GCST009391_1399 | Metabolite levels | 3.000000e-06 |
| GCST009391_1436 | Metabolite levels | 2.000000e-07 |
| GCST009391_1449 | Metabolite levels | 3.000000e-08 |
| GCST009391_1458 | Metabolite levels | 5.000000e-08 |
| GCST009391_1504 | Metabolite levels | 3.000000e-07 |
| GCST009391_1521 | Metabolite levels | 3.000000e-06 |
| GCST009391_1600 | Metabolite levels | 3.000000e-08 |
| GCST009391_1613 | Metabolite levels | 7.000000e-08 |
| GCST009391_1731 | Metabolite levels | 6.000000e-06 |
| GCST009391_1763 | Metabolite levels | 6.000000e-06 |
| GCST009391_1815 | Metabolite levels | 1.000000e-06 |
| GCST009391_1821 | Metabolite levels | 2.000000e-08 |
| GCST009391_1832 | Metabolite levels | 2.000000e-07 |
| GCST009391_1840 | Metabolite levels | 1.000000e-07 |
| GCST009391_1867 | Metabolite levels | 3.000000e-09 |
EFO canonical traits (33, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004838 | calcium measurement |
| EFO:0004704 | age at menopause |
| EFO:0004536 | total blood protein measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0004330 | coffee consumption |
| EFO:0006782 | cups of coffee per day measurement |
| EFO:0010458 | alpha-hydroxybutyric acid measurement |
| EFO:0009765 | alanine measurement |
| EFO:0010362 | lysophosphatidylcholine 20:3 measurement |
| EFO:0010355 | diacylglycerol 36:2 measurement |
| EFO:0010369 | lysophosphatidylethanolamine 18:2 measurement |
| EFO:0010409 | triacylglycerol 50:2 measurement |
| EFO:0010410 | triacylglycerol 50:3 measurement |
| EFO:0010406 | triacylglycerol 48:3 measurement |
| EFO:0010417 | triacylglycerol 52:5 measurement |
| EFO:0010418 | triacylglycerol 52:6 measurement |
| EFO:0010377 | phosphatidylcholine 34:3 measurement |
| EFO:0010378 | phosphatidylcholine 34:4 measurement |
| EFO:0010375 | phosphatidylcholine 34:1 measurement |
| EFO:0010370 | lysophosphatidylethanolamine 20:4 measurement |
| EFO:0010404 | triacylglycerol 48:1 measurement |
| EFO:0010405 | triacylglycerol 48:2 measurement |
| EFO:0010412 | triacylglycerol 50:5 measurement |
| EFO:0010413 | triacylglycerol 52:1 measurement |
| EFO:0010411 | triacylglycerol 50:4 measurement |
| EFO:0010414 | triacylglycerol 52:2 measurement |
| EFO:0010373 | phosphatidylcholine 32:1 measurement |
| EFO:0010374 | phosphatidylcholine 32:2 measurement |
| EFO:0007745 | lactate measurement |
| EFO:0010356 | lysophosphatidylcholine 14:0 measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, increases methylation, affects methylation | 3 |
| Fluoxetine | increases expression | 3 |
| Ketoconazole | increases expression | 3 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Amiodarone | increases expression | 2 |
| Amitriptyline | increases expression | 2 |
| Chlorpromazine | increases expression | 2 |
| Clozapine | increases expression | 2 |
| Flecainide | decreases expression, increases expression | 2 |
| Imipramine | increases expression | 2 |
| Perhexiline | increases expression | 2 |
| Silicon Dioxide | decreases expression, increases expression | 2 |
| Tamoxifen | increases expression | 2 |
| Thioridazine | increases expression | 2 |
| Valproic Acid | decreases methylation, affects expression | 2 |
| Zimeldine | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| Sertraline | increases expression | 2 |
| bisphenol A | affects expression | 1 |
| 2,2’-methylenebis(4-methyl-6-tert-butylphenol) | affects response to substance, affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| diallyl trisulfide | increases expression | 1 |
| chlorcyclizine | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): retinitis pigmentosa 71, short-rib thoracic dysplasia 10 with or without polydactyly