FOCAD-AS1

Summary

FOCAD-AS1 (FOCAD antisense RNA 1, HGNC:49789) is a long non-coding RNA gene on chromosome 9p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49789
Approved symbol	FOCAD-AS1
Name	FOCAD antisense RNA 1
Location	9p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227071
Ensembl biotype	lncRNA
Entrez	101929548
RNAcentral	URS000075B1AB — lncRNA, 423 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000439876, ENST00000445051

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439876 — 2 exons

Exon	Start	End
ENSE00004229880	20684568	20684803
ENSE00004229883	20683300	20683541

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 91.58.

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.58	gold quality
ventricular zone	UBERON:0003053	75.27	gold quality
skeletal muscle tissue	UBERON:0001134	71.51	gold quality
right adrenal gland	UBERON:0001233	69.89	gold quality
left adrenal gland cortex	UBERON:0035825	69.65	gold quality
ganglionic eminence	UBERON:0004023	69.55	gold quality
right adrenal gland cortex	UBERON:0035827	68.73	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.60	gold quality
left adrenal gland	UBERON:0001234	68.56	gold quality
adrenal gland	UBERON:0002369	68.13	gold quality
bone marrow cell	CL:0002092	68.11	silver quality
muscle of leg	UBERON:0001383	67.82	gold quality
gastrocnemius	UBERON:0001388	67.36	gold quality
islet of Langerhans	UBERON:0000006	65.81	gold quality
heart left ventricle	UBERON:0002084	65.16	gold quality
monocyte	CL:0000576	63.53	gold quality
vermiform appendix	UBERON:0001154	63.48	gold quality
bone marrow	UBERON:0002371	63.48	gold quality
superior frontal gyrus	UBERON:0002661	63.47	gold quality
sural nerve	UBERON:0015488	63.47	gold quality
prefrontal cortex	UBERON:0000451	62.86	gold quality
lymph node	UBERON:0000029	62.84	gold quality
corpus callosum	UBERON:0002336	62.84	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	62.81	gold quality
heart	UBERON:0000948	62.31	gold quality
duodenum	UBERON:0002114	62.27	gold quality
primary visual cortex	UBERON:0002436	61.57	gold quality
placenta	UBERON:0001987	61.40	gold quality
thyroid gland	UBERON:0002046	60.79	gold quality
apex of heart	UBERON:0002098	60.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.