FOLH1

gene
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Also known as PSMPSMANAALAD1NAALAdaseGCP2GCPII

Summary

FOLH1 (folate hydrolase 1, HGNC:3788) is a protein-coding gene on chromosome 11p11.12, encoding Glutamate carboxypeptidase 2 (Q04609). Has both folate hydrolase and N-acetylated-alpha-linked-acidic dipeptidase (NAALADase) activity.

This gene encodes a type II transmembrane glycoprotein belonging to the M28 peptidase family. The protein acts as a glutamate carboxypeptidase on different alternative substrates, including the nutrient folate and the neuropeptide N-acetyl-l-aspartyl-l-glutamate and is expressed in a number of tissues such as prostate, central and peripheral nervous system and kidney. A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. In the prostate the protein is up-regulated in cancerous cells and is used as an effective diagnostic and prognostic indicator of prostate cancer. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants encoding several different isoforms.

Source: NCBI Gene 2346 — RefSeq curated summary.

At a glance

  • GWAS associations: 22
  • Clinical variants (ClinVar): 93 total
  • Druggable target: yes — 7 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_004476

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3788
Approved symbolFOLH1
Namefolate hydrolase 1
Location11p11.12
Locus typegene with protein product
StatusApproved
AliasesPSM, PSMA, NAALAD1, NAALAdase, GCP2, GCPII
Ensembl geneENSG00000086205
Ensembl biotypeprotein_coding
OMIM600934
Entrez2346

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 10 protein_coding, 4 retained_intron, 3 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000256999, ENST00000340334, ENST00000356696, ENST00000458311, ENST00000525629, ENST00000525826, ENST00000526226, ENST00000529117, ENST00000529646, ENST00000529648, ENST00000532018, ENST00000533034, ENST00000533510, ENST00000897368, ENST00000897369, ENST00000897370, ENST00000953048, ENST00000953049

RefSeq mRNA: 6 — MANE Select: NM_004476 NM_001014986, NM_001193471, NM_001193472, NM_001193473, NM_001351236, NM_004476

CCDS: CCDS31493, CCDS53627, CCDS53628, CCDS7946

Canonical transcript exons

ENST00000256999 — 19 exons

ExonStartEnd
ENSE000016277954918566949185855
ENSE000034593094915671749156807
ENSE000034711044917335749173476
ENSE000034719794917119549171277
ENSE000034892434917585949175957
ENSE000035107514916919549169258
ENSE000035219294915384649153927
ENSE000035394504920025549200441
ENSE000035544214914863949148731
ENSE000035554704916470549164772
ENSE000035582884917489249174977
ENSE000035902684920606749206172
ENSE000035964554919279349192894
ENSE000036398384918664449186769
ENSE000036410884915422849154492
ENSE000036562724920829249208602
ENSE000036609264918314949183242
ENSE000036787484915795249158043
ENSE000036936274914509249146945

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 99.33.

FANTOM5 (CAGE): breadth broad, TPM avg 5.2900 / max 482.8214, expressed in 278 samples.

FANTOM5 promoters (9 alternative TSS)

Promoter IDTPM avgSamples expressed
1196871.2420200
1196861.0220124
1196840.9753116
1196830.932192
1196890.5186104
1196880.2303109
2062810.154457
1196850.126969
1196820.088553

Top tissues by expression

157 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
duodenumUBERON:000211499.33gold quality
corpus callosumUBERON:000233697.43gold quality
C1 segment of cervical spinal cordUBERON:000646996.45gold quality
spinal cordUBERON:000224095.92gold quality
substantia nigraUBERON:000203893.27gold quality
Ammon’s hornUBERON:000195491.31gold quality
putamenUBERON:000187490.67gold quality
prostate glandUBERON:000236789.90gold quality
amygdalaUBERON:000187688.72gold quality
temporal lobeUBERON:000187188.27gold quality
liverUBERON:000210788.08gold quality
gall bladderUBERON:000211086.91gold quality
caudate nucleusUBERON:000187386.58gold quality
ventricular zoneUBERON:000305385.96gold quality
right lobe of liverUBERON:000111485.60gold quality
primary visual cortexUBERON:000243685.21gold quality
hypothalamusUBERON:000189885.17gold quality
Brodmann (1909) area 9UBERON:001354084.93gold quality
ganglionic eminenceUBERON:000402382.80gold quality
prefrontal cortexUBERON:000045182.56gold quality
nucleus accumbensUBERON:000188282.24gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047381.88gold quality
cerebral cortexUBERON:000095681.58gold quality
saliva-secreting glandUBERON:000104481.46gold quality
frontal cortexUBERON:000187081.07gold quality
dorsolateral prefrontal cortexUBERON:000983480.69gold quality
right frontal lobeUBERON:000281080.18gold quality
minor salivary glandUBERON:000183080.02gold quality
adult mammalian kidneyUBERON:000008279.38gold quality
central nervous systemUBERON:000101779.21gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 3.

ExperimentMarker?Max mean expression
E-ANND-3yes15.82
E-MTAB-6678yes12.80
E-GEOD-84465yes9.75

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AR, ELF3, ELF5, ETS1, NFATC1, VDR

miRNA regulators (miRDB)

8 targeting FOLH1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-428299.9975.366408
HSA-MIR-60799.9773.625593
HSA-MIR-367199.9073.043897
HSA-MIR-140-3P99.0467.691324
HSA-MIR-427298.7668.741810
HSA-MIR-660-5P98.1668.27680
HSA-MIR-1236-5P96.6266.38856
HSA-MIR-5591-3P96.2367.03489

Literature-anchored findings (GeneRIF, showing 40)

  • expressed in prostate tissue, and especially in prostate cancer tissue (PMID:12474535)
  • GCP2 polymorphism explained nearly 50% of the variance of red blood cell folate in ESRD (PMID:12707400)
  • GCP2 1561C>T is associated with elevated folate levels but not homocysteine levels in kidney transplant patients (PMID:12753319)
  • PSMA expression is regulated by NFATc1 with an AP-3 binding site (PMID:12850144)
  • N-linked carbohydrate structures are important for the folate hydrolase function of the protein. Removal of sugars partially or completely causes PSMA to be enzymatically inactive, improperly folded, resulting in increased rate of degradation. (PMID:12949938)
  • PSMA is internalized via a clathrin-dependent endocytic mechanism and that internalization of PSMA is mediated by the five N-terminal amino acids (PMID:14528023)
  • proteins binding PSMA (PMID:15141017)
  • Analysis of the predicted N-glycosylation sites also provides evidence that these sites are critical for GCPII carboxypeptidase activity (PMID:15152093)
  • amino acid segments at the N- and C-termini of the ectodomain of GCPII are essential for its carboxypeptidase activity and/or proper folding (PMID:15206943)
  • PSMA gene lacks specificity for detecting prostate epithelial cells (PMID:15389976)
  • Knockdown of PSMA expression increased invasiveness of LNCaP cells by 5-fold. (PMID:15705868)
  • Transcriptional activity of the PSMA promoter/enhancer is prostate specific. (PMID:15713827)
  • Structure and relevance to the development of chemotherapeutics and cancer-imaging agents. (PMID:15837926)
  • PSMA may function as a receptor internalizing a putative ligand, an enzyme playing a role in nutrient uptake, and a peptidase involved in signal transduction in prostate epithelial cells. [review] (PMID:15840561)
  • acquisition of folding determinants in the Golgi is an essential prerequisite for protein trafficking and sorting of PSMA (PMID:16221666)
  • The folate hydrolase activity of PSMA may provide a growth advantage to prostate cancer cells in low folate and physiological folate environments. (PMID:16496414)
  • PSMA binds to caveolin-1 and undergoes internalization via a caveolae-dependent mechanism in microvascular endothelial cells (PMID:16713605)
  • In suicide gene therapy, anti-PSMA-liposome complex exerted a significant inhibitory effect on the growth of LNCaP xenograft, in contrast to normal IgG-liposome complex. (PMID:17032155)
  • Using pure recombinant GCPII and homologous GCPIII, we conclude that GCPII is responsible for the majority of overall NAAG-hydrolyzing activity in the human brain. (PMID:17150306)
  • Polymorphism is associated with higher plasma folate and lower homocysteine concentrations in women who abstain from alcohol. (PMID:17684227)
  • Pattern differences in GCP II gene promoter expression in SVG and LNCaP cells suggest that sequences beyond 240 bp may be important for tissue-specific GCP II expression. (PMID:17689503)
  • the residues forming the S1 pocket might be more important for the ‘fine-tuning’ of GCPII substrate specificity (PMID:17714508)
  • the intracellular transport of PSMA occurs through populations of DRMs distinct for each biosynthetic form and cellular compartment (PMID:17935484)
  • Tissues such as prostate and testes exhibit different GCPII expression levels among the species studied (human, rats, swine). (PMID:18076021)
  • Crystal structures of human GCPII in complex with phosphapeptide analogs show the S1 pocket of GCPII and the data indicate the importance of Asn519, Arg463, Arg534, and Arg536 for recognition of the penultimate (i.e., P1) substrate residues. (PMID:18234225)
  • prostate-specific membrane antigen is expressed in tumor-associated neovasculature of the majority of renal cortical tumors (PMID:18344976)
  • PSMA is underexpressed in advanced stage endometrial adenocarcinoma (EAC); loss of PSMA expression can be considered as a prognostic marker in patients with EAC; loss of PSMA expression in a subset of EAC cases could be due to epigenetic silencing (PMID:18349274)
  • Given our finding of frequent expression of PSMA in Schwannomas, they should be clinically considered in the differential diagnosis of a lesion that is positive on PSMA radioimmunoscintigraphy study performed during a metastatic work-up of PCa patient. (PMID:18534872)
  • the efficacy of 5-FU-based chemotherapy in prostate cancers can be significantly improved by targeted expression of the suicide gene UPRT under the control of prostate-specific membrane antigen promoter/enhancer (PMID:18626508)
  • The present study describes an efficient RNAi system for gene silencing that is specific to prostate cancer cells using the PSMA promoter/enhancer (PMID:18639471)
  • Neonatal methylmalonic acid was predicted by maternal methylmalonic acid and GCPII (PMID:18823966)
  • prostate-specific membrane antigen is expressed in neovasculature from physiologic regenerative and reparative conditions (PMID:18839017)
  • PSMA was the most useful marker to identify residual prostatic carcinoma after hormone therapy. (PMID:18844933)
  • Ectopic PSMA expression on PC-3 cells increased the invasive capacity of cells in in vitro invasion assays, which could be competed out by folic acid. These results suggest PSMA facilitates the development of prostate cancer (PMID:18974153)
  • analysis of interactions between human glutamate carboxypeptidase II and urea-based inhibitors (PMID:19053759)
  • PSM’ protein is likely not generated by alternative splicing of the PSMA gene but by different mechanism, probably via an endoproteolytic cleavage of the full-length PSMA. (PMID:19107881)
  • although the RFC1 80G > A and FOLH1 1561C > T polymorphisms may influence folate status, they are not likely to have a major independent role in the development of colorectal cancer (PMID:19172696)
  • PSMA-fostered RAS-RAC1-MAPK pathway activation produced a strong induction of NF-kappaB activation associated with an increased expression of IL-6 and CCL5 genes. (PMID:19242540)
  • Reaction mechanisms of GCPII revealed by mutagenesis, X-ray crystallography, and computational methods. (PMID:19301871)
  • PSMA and prostate stem cell antigen are both highly expressed in lymph node and bone metastases of prostate cancer. (PMID:19343734)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_rerionaalad2ENSDARG00000021383
mus_musculusFolh1ENSMUSG00000001773
rattus_norvegicusFolh1ENSRNOG00000013770
caenorhabditis_elegansWBGENE00007954
caenorhabditis_elegansWBGENE00020082

Paralogs (5): TFRC (ENSG00000072274), NAALAD2 (ENSG00000077616), TFR2 (ENSG00000106327), NAALADL1 (ENSG00000168060), NAALADL2 (ENSG00000177694)

Protein

Protein identifiers

Glutamate carboxypeptidase 2Q04609 (reviewed: Q04609)

Alternative names: Cell growth-inhibiting gene 27 protein, Folate hydrolase 1, Folylpoly-gamma-glutamate carboxypeptidase, Glutamate carboxypeptidase II, Membrane glutamate carboxypeptidase, N-acetylated-alpha-linked acidic dipeptidase I, Prostate-specific membrane antigen, Pteroylpoly-gamma-glutamate carboxypeptidase

All UniProt accessions (5): Q04609, E9PI29, E9PKM3, E9PLV0, E9PMK6

UniProt curated annotations — full annotation on UniProt →

Function. Has both folate hydrolase and N-acetylated-alpha-linked-acidic dipeptidase (NAALADase) activity. Has a preference for tri-alpha-glutamate peptides. In the intestine, required for the uptake of folate. In the brain, modulates excitatory neurotransmission through the hydrolysis of the neuropeptide, N-aceylaspartylglutamate (NAAG), thereby releasing glutamate. Involved in prostate tumor progression. Also exhibits a dipeptidyl-peptidase IV type activity. In vitro, cleaves Gly-Pro-AMC.

Subunit / interactions. Homodimer.

Subcellular location. Cell membrane Cytoplasm.

Tissue specificity. Highly expressed in prostate epithelium. Detected in urinary bladder, kidney, testis, ovary, fallopian tube, breast, adrenal gland, liver, esophagus, stomach, small intestine, colon and brain (at protein level). Detected in the small intestine, brain, kidney, liver, spleen, colon, trachea, spinal cord and the capillary endothelium of a variety of tumors. Expressed specifically in jejunum brush border membranes. In the brain, highly expressed in the ventral striatum and brain stem. Also expressed in fetal liver and kidney. Isoform PSMA’ is the most abundant form in normal prostate. Isoform PSMA-1 is the most abundant form in primary prostate tumors. Isoform PSMA-9 is specifically expressed in prostate cancer.

Post-translational modifications. The first two amino acids at the N-terminus of isoform PSMA’ appear to be cleaved by limited proteolysis. The N-terminus is blocked.

Activity regulation. The NAALADase activity is inhibited by beta-NAAG, quisqualic acid, 2-(phosphonomethyl) pentanedioic acid (PMPA) and EDTA. Activated by cobalt.

Cofactor. Binds 2 Zn(2+) ions per subunit. Required for NAALADase activity.

Domain organisation. The NAALADase activity is found in the central region, the dipeptidyl peptidase IV type activity in the C-terminal.

Induction. In the prostate, up-regulated in response to androgen deprivation.

Polymorphism. Genetic variation in FOLH1 may be associated with low folate levels and consequent hyperhomocysteinemia. This condition can result in increased risk of cardiovascular disease, neural tube defects, and cognitive deficits.

Miscellaneous. PSMA is used as a diagnostic and prognostic indicator of prostate cancer, and as a possible marker for various neurological disorders such as schizophrenia, Alzheimer disease and Huntington disease.

Similarity. Belongs to the peptidase M28 family. M28B subfamily.

Isoforms (8)

UniProt IDNamesCanonical?
Q04609-1PSMA-1yes
Q04609-3PSMA-3
Q04609-4PSMA-4
Q04609-6PSMA’
Q04609-7PSMA-7
Q04609-8PSMA-8
Q04609-9PSMA-9, PSM-E
Q04609-1010

RefSeq proteins (6): NP_001014986, NP_001180400, NP_001180401, NP_001180402, NP_001338165, NP_004467* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR003137PA_domainDomain
IPR007365TFR-like_dimer_domDomain
IPR007484Peptidase_M28Domain
IPR036757TFR-like_dimer_dom_sfHomologous_superfamily
IPR039373Peptidase_M28BFamily
IPR046450PA_dom_sfHomologous_superfamily

Pfam: PF02225, PF04253, PF04389

Enzyme classification (BRENDA):

  • EC 3.4.17.21 — glutamate carboxypeptidase II (BRENDA: 10 organisms, 60 substrates, 336 inhibitors, 15 Km, 14 kcat entries)

Substrate kinetics (BRENDA)

5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
N-ACETYL-L-ASP-L-GLU0.0001–5406
N-ACETYL-ALPHA-L-ASPARTYL-L-GLUTAMATE0.0001–0.00034
N-ACETYL-L-ASPARTYL-L-GLUTAMATE0.0006–0.00192
PTEROYL-DI-L-GLUTAMATE2
N-ACETYL-ASP-GLU1301

UniProt features (140 total): strand 30, helix 28, mutagenesis site 23, binding site 19, glycosylation site 10, splice variant 7, turn 6, sequence variant 4, active site 4, sequence conflict 3, topological domain 2, chain 1, transmembrane region 1, modified residue 1, region of interest 1

Structure

Experimental structures (PDB)

88 structures, top 30 by resolution.

PDBMethodResolution (Å)
5O5TX-RAY DIFFRACTION1.43
5OF0X-RAY DIFFRACTION1.48
3BI1X-RAY DIFFRACTION1.5
6FE5X-RAY DIFFRACTION1.52
5O5UX-RAY DIFFRACTION1.53
3D7FX-RAY DIFFRACTION1.54
3D7HX-RAY DIFFRACTION1.55
8BO8X-RAY DIFFRACTION1.55
8BOLX-RAY DIFFRACTION1.55
6SGPX-RAY DIFFRACTION1.58
6SKHX-RAY DIFFRACTION1.58
8BOWX-RAY DIFFRACTION1.58
2XEFX-RAY DIFFRACTION1.59
2XEGX-RAY DIFFRACTION1.59
3BHXX-RAY DIFFRACTION1.6
3RBUX-RAY DIFFRACTION1.6
6EZ9X-RAY DIFFRACTION1.61
2OR4X-RAY DIFFRACTION1.62
4NGPX-RAY DIFFRACTION1.63
6F5LX-RAY DIFFRACTION1.63
2OOTX-RAY DIFFRACTION1.64
4NGNX-RAY DIFFRACTION1.64
4W9YX-RAY DIFFRACTION1.64
3SJFX-RAY DIFFRACTION1.65
3SJGX-RAY DIFFRACTION1.65
4MCPX-RAY DIFFRACTION1.65
4MCRX-RAY DIFFRACTION1.65
4OC2X-RAY DIFFRACTION1.65
4P4DX-RAY DIFFRACTION1.65
5O5RX-RAY DIFFRACTION1.65

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q04609-F193.890.89

Antibody-complex structures (SAbDab): 39HLW, 9HVI, 9HVK

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (4): 424 (nucleophile; for naaladase activity); 628 (charge relay system); 666 (charge relay system); 689 (charge relay system)

Ligand- & substrate-binding residues (19): 257; 269; 272; 377; 387; 387; 424; 425; 433; 436; 453; 517–518

Post-translational modifications (1): 10

Glycosylation sites (10): 51, 76, 121, 140, 153, 195, 336, 459, 476, 638

Mutagenesis-validated functional residues (23):

PositionPhenotype
51loss of glycosylation. reduces enzyme activity.
76loss of glycosylation. reduces enzyme activity.
121loss of glycosylation. severely reduced enzyme activity.
140loss of glycosylation. severely reduced enzyme activity.
153loss of glycosylation. severely reduced enzyme activity.
195loss of glycosylation. severely reduced enzyme activity.
336loss of glycosylation. reduces enzyme activity.
377complete loss of activity.
379complete loss of activity.
387complete loss of activity.
387no effect on enzyme activity.
388no effect on enzyme activity.
424complete loss of activity.
424reduces enzyme activity.
425complete loss of activity.
453complete loss of activity.
453reduces enzyme activity.
454reduces enzyme activity.
459loss of glycosylation. reduces enzyme activity.
476loss of glycosylation. reduces enzyme activity.
638loss of glycosylation. abolishes enzyme activity.
640abolishes enzyme activity.

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-8963693Aspartate and asparagine metabolism

MSigDB gene sets: 96 (showing top): GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, MODULE_172, GOBP_DIGESTION, GOBP_GLUTAMINE_FAMILY_AMINO_ACID_BIOSYNTHETIC_PROCESS, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_GLUTAMATE_METABOLIC_PROCESS, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, ROVERSI_GLIOMA_COPY_NUMBER_UP, GOCC_CELL_SURFACE, GOBP_AMINO_ACID_BIOSYNTHETIC_PROCESS, GOBP_GLUTAMINE_FAMILY_AMINO_ACID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, RODWELL_AGING_KIDNEY_NO_BLOOD_DN, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS

GO Biological Process (5): proteolysis (GO:0006508), obsolete glutamate biosynthetic process (GO:0006537), folic acid-containing compound metabolic process (GO:0006760), intestinal folate absorption (GO:0098829), positive regulation of glutamate receptor signaling pathway (GO:1900451)

GO Molecular Function (11): carboxypeptidase activity (GO:0004180), metallocarboxypeptidase activity (GO:0004181), peptidase activity (GO:0008233), dipeptidase activity (GO:0016805), metal ion binding (GO:0046872), Ac-Asp-Glu binding (GO:1904492), tetrahydrofolyl-poly(glutamate) polymer binding (GO:1904493), catalytic activity (GO:0003824), protein binding (GO:0005515), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787)

GO Cellular Component (5): cytoplasm (GO:0005737), plasma membrane (GO:0005886), cell surface (GO:0009986), membrane (GO:0016020), extracellular exosome (GO:0070062)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Metabolism of amino acids and derivatives1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
exopeptidase activity2
protein metabolic process1
modified amino acid metabolic process1
pteridine-containing compound metabolic process1
intestinal absorption1
glutamate receptor signaling pathway1
positive regulation of signal transduction1
regulation of glutamate receptor signaling pathway1
carboxypeptidase activity1
metalloexopeptidase activity1
hydrolase activity1
catalytic activity, acting on a protein1
cation binding1
anion binding1
oligopeptide binding1
small molecule binding1
molecular_function1
binding1
peptidase activity1
catalytic activity1
intracellular anatomical structure1
membrane1
cell periphery1
extracellular vesicle1

Protein interactions and networks

STRING

1786 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
FOLH1KLK3P07288939
FOLH1PSCAO43653910
FOLH1ERBB2P04626824
FOLH1GRPRP30550819
FOLH1FOLR1P15328817
FOLH1FOLR3P41439798
FOLH1ALBP02768797
FOLH1IZUMO1RA6ND01790
FOLH1FOLR2P14207783
FOLH1EGFRP00533780
FOLH1GRPP07491777
FOLH1MUC1P13931758
FOLH1DPP4P27487758
FOLH1MSLNQ13421755
FOLH1TNFRSF9Q07011754

IntAct

9 interactions, top by confidence:

ABTypeScore
FOLH1Dlg4psi-mi:“MI:0407”(direct interaction)0.440
FOLH1MTAPpsi-mi:“MI:0915”(physical association)0.370
RPS3FOLH1psi-mi:“MI:0915”(physical association)0.370
MMEpsi-mi:“MI:0914”(association)0.350
TEX101GGT3Ppsi-mi:“MI:0914”(association)0.350
SLC2A8FOLH1psi-mi:“MI:0914”(association)0.350
FOLH1GLG1psi-mi:“MI:0914”(association)0.350
LCORFOLH1psi-mi:“MI:0915”(physical association)0.000

BioGRID (18): CTH (Co-fractionation), FOLH1 (Affinity Capture-RNA), FOLH1 (Affinity Capture-Western), HDAC1 (Affinity Capture-Western), FOLH1 (Affinity Capture-Western), C3orf52 (Two-hybrid), DDX21 (Proximity Label-MS), FOLH1 (Affinity Capture-MS), FOLH1 (Affinity Capture-MS), GLG1 (Affinity Capture-MS), NAALAD2 (Affinity Capture-MS), FOLH1 (Affinity Capture-MS), FOLH1 (Two-hybrid), FOLH1 (Affinity Capture-MS), ITGB4 (Affinity Capture-Western)

ESM2 similar proteins: A3KG59, A4IFH5, B9N1F9, D3ZVR9, O04059, O35331, O35621, O46560, P11172, P24298, P37111, Q03154, Q04609, Q15124, Q17QK3, Q2R483, Q501L1, Q5E9T8, Q5I0K3, Q5NAY4, Q5R514, Q5R5C9, Q5RDE7, Q5RDN7, Q5RFB0, Q5RFI8, Q6AY30, Q6AYS7, Q6K2E8, Q6PTT0, Q6Q0N1, Q6ZV70, Q7TSV4, Q7X7L3, Q8BZF8, Q8CG45, Q8CG76, Q8IYS1, Q8K183, Q8N0X4

Diamond homologs: A0A1D6L709, B2GUY2, D4B1R0, O35409, O43023, O54697, O77564, P70627, P91406, Q04609, Q5RDH6, Q5WN23, Q7M758, Q7Y228, Q852M4, Q9CZR2, Q9HBA9, Q9JKX3, Q9M1S8, Q9UP52, Q9UQQ1, Q9Y3Q0, A4R017, A6REE0, B2W3C7, B2W572, B6K327, C4JHZ6, C5FP82, C9SPU8, D4AM42, D4D8N9, E3RJ99, E3S5D4, E4URG0, E5A6Z0, E5R501, Q01693, Q0UNS4, Q2U1F3

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

93 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance64
Likely benign10
Benign4

Top pathogenic / likely-pathogenic (0)

SpliceAI

3311 predictions. Top by Δscore:

VariantEffectΔscore
11:49153844:A:ACdonor_gain1.0000
11:49153845:C:CCdonor_gain1.0000
11:49153845:CTTG:Cdonor_gain1.0000
11:49156714:TA:Tdonor_loss1.0000
11:49156715:A:ACdonor_gain1.0000
11:49156715:A:Tdonor_loss1.0000
11:49156715:AC:Adonor_gain1.0000
11:49156715:ACC:Adonor_gain1.0000
11:49156716:C:CTdonor_gain1.0000
11:49156716:CC:Cdonor_gain1.0000
11:49156716:CCC:Cdonor_gain1.0000
11:49156716:CCCA:Cdonor_gain1.0000
11:49156716:CCCAA:Cdonor_gain1.0000
11:49156803:TTATC:Tacceptor_gain1.0000
11:49156804:TATC:Tacceptor_gain1.0000
11:49156804:TATCC:Tacceptor_gain1.0000
11:49156805:ATCCT:Aacceptor_gain1.0000
11:49156806:TC:Tacceptor_gain1.0000
11:49156806:TCC:Tacceptor_loss1.0000
11:49156806:TCCTT:Tacceptor_gain1.0000
11:49156807:CCTT:Cacceptor_gain1.0000
11:49156808:C:CCacceptor_gain1.0000
11:49156808:C:Tacceptor_gain1.0000
11:49156809:T:Aacceptor_loss1.0000
11:49156809:T:Cacceptor_gain1.0000
11:49156809:T:TCacceptor_gain1.0000
11:49156810:T:TCacceptor_gain1.0000
11:49156811:T:Cacceptor_gain1.0000
11:49156811:T:TCacceptor_gain1.0000
11:49156817:A:ACacceptor_gain1.0000

AlphaMissense

4942 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:49171242:A:GW421R0.999
11:49171242:A:TW421R0.999
11:49171243:G:CS420R0.998
11:49171243:G:TS420R0.998
11:49171245:T:GS420R0.998
11:49171236:C:GA423P0.997
11:49171240:C:AW421C0.996
11:49171240:C:GW421C0.996
11:49200368:A:GW100R0.996
11:49200368:A:TW100R0.996
11:49171261:T:AR414S0.995
11:49171261:T:GR414S0.995
11:49173441:A:GW381R0.995
11:49173441:A:TW381R0.995
11:49173447:C:GD379H0.995
11:49173449:C:GR378P0.995
11:49173467:A:TV372D0.995
11:49186656:G:CF209L0.995
11:49186656:G:TF209L0.995
11:49186658:A:GF209L0.995
11:49169214:A:CN451K0.994
11:49169214:A:TN451K0.994
11:49171215:C:GG430R0.994
11:49173446:T:AD379V0.993
11:49156781:T:AD520V0.992
11:49156782:C:GD520H0.992
11:49171211:G:AS431F0.992
11:49171214:C:TG430D0.992
11:49171262:C:GR414T0.992
11:49173412:A:CS390R0.992

dbSNP variants (sampled 300 via entrez): RS1000202032 (11:49170981 T>C), RS1000360408 (11:49177490 A>T), RS1000467076 (11:49183593 A>G), RS1000516092 (11:49191076 A>G), RS1000636387 (11:49146199 C>T), RS1000747212 (11:49197368 C>T), RS1000785326 (11:49153099 A>G), RS1000817978 (11:49184025 A>T), RS1000874288 (11:49204746 C>G), RS1000896133 (11:49160397 T>C), RS1000954461 (11:49166541 T>A), RS1001009793 (11:49166162 T>A,C), RS1001179831 (11:49196900 A>C), RS1001348529 (11:49160076 C>T), RS1001362467 (11:49179221 G>A)

Disease associations

OMIM: gene MIM:600934 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

22 associations (top):

StudyTraitp-value
GCST000288_7HDL cholesterol6.000000e-11
GCST000817_142Height2.000000e-08
GCST005580_61Intraocular pressure3.000000e-12
GCST006585_880Blood protein levels3.000000e-26
GCST006947_4Feeling fed-up4.000000e-08
GCST007267_71Systolic blood pressure1.000000e-10
GCST008075_185HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)4.000000e-09
GCST008075_48HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)7.000000e-14
GCST008084_113HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)1.000000e-49
GCST008084_155HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)1.000000e-39
GCST008085_160HDL cholesterol levels in current drinkers5.000000e-09
GCST008085_185HDL cholesterol levels in current drinkers1.000000e-06
GCST009733_165Urinary metabolite levels in chronic kidney disease3.000000e-96
GCST010241_218Apolipoprotein A1 levels1.000000e-09
GCST010242_352HDL cholesterol levels8.000000e-11
GCST010250_1Systolic blood pressure x dichotomous lifestyle risk score interaction (2df test)7.000000e-07
GCST010989_99Body size at age 103.000000e-08
GCST012020_178Serum metabolite levels3.000000e-84
GCST012020_179Serum metabolite levels4.000000e-58
GCST012021_103Serum metabolite levels3.000000e-84
GCST012021_104Serum metabolite levels4.000000e-58
GCST012353_37Serum metabolite concentrations in chronic kidney disease5.000000e-14

EFO canonical traits (9, from GWAS)

EFO IDTrait name
EFO:0004612high density lipoprotein cholesterol measurement
EFO:0004695intraocular pressure measurement
EFO:0009588feeling “fed-up” measurement
EFO:0006335systolic blood pressure
EFO:0004329alcohol drinking
EFO:0005116urinary metabolite measurement
EFO:0004614apolipoprotein A 1 measurement
EFO:0010724lifestyle measurement
EFO:0009819comparative body size at age 10, self-reported

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL1892 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

7 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 316,334 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL3578202GOZETOTIDE4466
CHEMBL4299851PIFLUFOLASTAT4275
CHEMBL53463DOXORUBICIN4314,282
CHEMBL3427435CTT-1057332
CHEMBL4594280VIPIVOTIDE TETRAXETAN2971
CHEMBL496748IOFOLASTAT258
CHEMBL456029MIP-10951250

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs61886492Toxicity3mercaptopurine;methotrexateAcute lymphoblastic leukemia

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs61886492FOLH131.251mercaptopurine;methotrexate

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — M28: Aminopeptidase Y

Most potent curated ligand interactions (2 total), top 2:

LigandActionAffinityParameter
vipivotide tetraxetanInhibition9.43pKi
compound 8d [PMID: 15027864]Inhibition8.52pKi

Binding affinities (BindingDB)

167 measured of 186 human assays (187 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
pentanedioic acid analogue, (S)-1IC500.1 nM
US20250213705, Compound 120KD0.141 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 113KD0.142 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 102KD0.157 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 119KD0.161 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 109KD0.164 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 103KD0.169 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 2KD0.208 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 101KD0.249 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 110KD0.252 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 106KD0.288 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 108KD0.294 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 114KD0.294 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
pentanedioic acid analogue, (RS)-1IC500.3 nM
CHEMBL2079731KD0.3 nM
US20250213705, Compound 104KD0.346 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 107KD0.379 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 112KD0.417 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 78KD0.43 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 68KD0.46 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 100KD0.477 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
CHEMBL2079727KD0.5 nM
US20250213705, Compound 87KD0.5 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 111KD0.512 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 115KD0.536 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 105IC500.551 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 71KD0.56 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 12KD0.568 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 67KD0.6 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
(2S)-2-[[(1S)-1-carboxy-5-[6-[[1-(2-fluoroethyl)triazol-4-yl]methoxy]-2-oxo-3H-benzimidazol-1-yl]pentyl]carbamoylamino]pentanedioic acidKI0.63 nMUS-10894807: PSMA imaging agents
US20250213705, Compound 8KD0.654 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
Boc-AdamGPI TrimerKD0.7 nM
US20250213705, Compound 99KD0.73 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
5-[((S)-3-{3-[5-tert-Butoxycarbonylamino-3,7-bis-(2-{(S)-1-carboxy-3-[(2,4-dicarboxy-butyl)-hydroxy-phosphinoyl]-propylcarbamoyl}-ethyl)-adamantan-1-yl]-propionylamino}-3-carboxy-propyl)-hydroxy-phosphinoyl]-4-carboxy-pentanoic acidKD0.8 nM
US20250213705, Compound 34KD0.85 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 64KD0.92 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 74KD0.92 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 59KD0.98 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 69KD0.98 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 36KD0.996 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 92KD1.01 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 84KD1.05 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 37KD1.07 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 39KD1.08 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 61KD1.1 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 62KD1.11 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 52KD1.12 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 55KD1.15 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 56KD1.15 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE
US20250213705, Compound 86KD1.17 nMUS-20250213705: PSMA TARGETING LIGANDS AND METHODS OF USE

ChEMBL bioactivities

671 potent at pChembl≥5 of 693 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
11.00Ki0.01nMCHEMBL510924
11.00Ki0.01nMCHEMBL6007312
10.77Ki0.017nMCHEMBL5866602
10.74Ki0.018nMGOZETOTIDE
10.70Ki0.02nMCHEMBL5786057
10.68IC500.021nMCHEMBL510924
10.52Ki0.03nMCHEMBL5994140
10.46Ki0.035nMCHEMBL5848906
10.44Ki0.036nMCHEMBL6010838
10.35Ki0.0449nMCHEMBL3309678
10.35Ki0.045nMCHEMBL3309678
10.31Ki0.049nMCHEMBL3578199
10.30Ki0.05nMCHEMBL510924
10.15Ki0.071nMCHEMBL3578197
10.15Ki0.07nMCHEMBL5786590
10.12IC500.075nMCHEMBL4284995
10.04IC500.091nMTUBULYSIN B
10.00Ki0.1nMCHEMBL189217
10.00Ki0.1nMCHEMBL5753520
9.96Ki0.11nMCHEMBL3578200
9.92Ki0.12nMCHEMBL5743096
9.89IC500.13nMCHEMBL4280968
9.85Ki0.14nMCHEMBL4211875
9.82IC500.15nMCHEMBL4286872
9.80Ki0.16nMCHEMBL5873627
9.77Ki0.17nMCHEMBL3311268
9.76Ki0.174nMCHEMBL3311268
9.71Ki0.194nMCHEMBL454897
9.70Ki0.2nMCHEMBL47009
9.70IC500.2nMCHEMBL4288368
9.70Kd0.2nMCHEMBL2079731
9.70Kd0.2nMCHEMBL508430
9.70Ki0.2nMCHEMBL6015887
9.70Ki0.2nMCHEMBL5795495
9.70Ki0.2nMCHEMBL5798260
9.70Ki0.2nMCHEMBL6050284
9.66Ki0.221nMCHEMBL3309680
9.66IC500.22nMCHEMBL510924
9.59Ki0.256nMCHEMBL454897
9.59Ki0.26nMCHEMBL5872050
9.58Ki0.265nMCHEMBL5876702
9.58Ki0.265nMCHEMBL5932456
9.57Ki0.268nMCHEMBL3309676
9.55Ki0.28nMCHEMBL47009
9.55IC500.28nMCHEMBL4277729
9.52IC500.3nMCHEMBL47009
9.52Ki0.3nMCHEMBL47009
9.52Kd0.3nMCHEMBL2079731
9.52Kd0.3nMCHEMBL508430
9.52Ki0.3nMCHEMBL189217

PubChem BioAssay actives

513 with measured affinity, of 821 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2S)-2-[[(1S)-5-[[6-[4-[4-(4-acetylpiperazin-1-yl)phenyl]piperazin-1-yl]pyridine-3-carbonyl]-[(4-bromophenyl)methyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki<0.0001uM
(2S)-2-[[(1S)-5-[(4-bromophenyl)methyl-[6-[4-[4-[4-[4-carboxy-3-(3-hydroxy-6-oxoxanthen-9-yl)benzoyl]piperazin-1-yl]phenyl]piperazin-1-yl]pyridine-3-carbonyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki<0.0001uM
(2S)-2-[[(1S)-1-carboxy-5-[(4-iodobenzoyl)amino]pentyl]carbamoylamino]pentanedioic acid1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki<0.0001uM
Gozetotide1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki<0.0001uM
(2S)-2-[[(1S)-5-[acetyl-[(4-bromophenyl)methyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki<0.0001uM
(2S)-2-(phosphonomethyl)pentanedioic acid1797656: Microplate GCPII Radioactivity-Based Assay from Article 10.1021/jm049258g: “Enantiospecificity of glutamate carboxypeptidase II inhibition.”ic500.0001uM
(2S)-2-[[(1S)-5-[[6-[4-[4-(4-acetylpiperazin-1-yl)phenyl]piperazin-1-yl]pyridine-3-carbonyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki0.0001uM
(2S)-2-[[(1S)-5-[[6-[4-[4-[4-[3-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoyl]piperazin-1-yl]phenyl]piperazin-1-yl]pyridine-3-carbonyl]-[(4-bromophenyl)methyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1226540: Inhibition of antiTEV-tagged GCP2 extracellular portion (aa 44-750) (unknown origin) using folyl-di-L-glutamate as substrate by HPLC-based enzymatic assayki0.0001uM
(2S)-2-[[(1S)-1-carboxy-5-[(6-fluoro-3-pyridinyl)-methylamino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0001uM
(2S)-2-[[(1S)-1-carboxy-5-[N-[2-[(6-fluoropyridine-3-carbonyl)amino]ethyl]anilino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0001uM
3-[6-[[4-[[(2S)-1,5-bis[[(5S)-5-carboxy-5-[[(1S)-1,3-dicarboxypropyl]carbamoylamino]pentyl]amino]-1,5-dioxopentan-2-yl]amino]-4-oxobutyl]amino]-6-oxohexyl]-2-[(1E,3E,5E)-5-(3-ethyl-1,1-dimethyl-6,8-disulfobenzo[e]indol-2-ylidene)penta-1,3-dienyl]-1,1-dimethyl-8-sulfobenzo[e]indol-3-ium-6-sulfonate1374082: Inhibition of PSMA in human LNCaP cell lysates incubated for 2 hrs in presence of N-acetylaspartylglutamate by Amplex red glutamic acid/glutamate oxidase assayki0.0001uM
(2S)-2-[[(1S)-1-carboxy-5-[N-[2-[(4-fluorobenzoyl)amino]ethyl]anilino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0001uM
2-(phosphonomethyl)pentanedioic acid74532: In vitro inhibitory activity against glutamate carboxypeptidase II (GCP II) using N-acetyl-L-aspartyl-[3H]L-glutamate as a substrateki0.0002uM
(2S)-2-[[(1S)-1-carboxy-5-(4-fluoro-N-methylanilino)-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0002uM
(2S)-2-[[(1S)-1-carboxy-5-[(4-fluorobenzoyl)amino]pentyl]carbamoylamino]pentanedioic acid409346: Inhibition of PSMA in human LNCaP cell extract using [3H]NAAG by fluorescence-based assayki0.0002uM
2-[[[(3S)-3-[3-[3,5-bis[3-[[(1S)-1-carboxy-3-[2,4-dicarboxybutyl(hydroxy)phosphoryl]propyl]amino]-3-oxopropyl]-7-[(2-methylpropan-2-yl)oxycarbonylamino]-1-adamantyl]propanoylamino]-3-carboxypropyl]-hydroxyphosphoryl]methyl]pentanedioic acid411794: Binding affinity to PSMA in human PC3 cells assessed as cell surface binding in Tris-buffered saline bufferkd0.0002uM
sodium 4-[[[(3S)-3-[3-[3,5-bis[3-[[(1S)-1-carboxy-3-[2,4-dicarboxybutyl(hydroxy)phosphoryl]propyl]amino]-3-oxopropyl]-7-[6-[2-[(E)-2-[(3E)-3-[(2E)-2-(3,3-dimethyl-1H-indol-2-ylidene)ethylidene]-2-(4-sulfonatophenoxy)cyclohexen-1-yl]ethenyl]-3,3-dimethylindol-1-ium-1-yl]hexanoylamino]-1-adamantyl]propanoylamino]-3-carboxypropyl]-hydroxyphosphoryl]methyl]-5-hydroxy-5-oxopentanoate411795: Binding affinity to PSMA in human LNCaP cells assessed as cell surface binding in Tris-buffered saline bufferkd0.0002uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)-4-bromophenyl]carbamoylamino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0002uM
(2S)-2-[[(1S)-5-acetamido-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0002uM
(2S)-2-[[(1S)-5-[acetyl(benzyl)amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0003uM
(2S)-2-[[(1S)-1-carboxy-5-(4-fluoroanilino)-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0003uM
(2S)-2-[[(1S)-1-carboxy-5-(3-fluoroanilino)-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0003uM
(2S)-2-[[[(2S)-2-carboxy-2-[[(4S)-4-carboxy-4-[6-[[3-carboxy-4-(3-hydroxy-6-oxoxanthen-9-yl)benzoyl]amino]hexanoylamino]butanoyl]amino]ethoxy]-hydroxyphosphoryl]amino]pentanedioic acid631983: Inhibition of PSMA using N-[4-(phenylazo)-benzoyl]-glutamyl-gamma-glutamic acid as substrate after 15 mins by HPLC analysisic500.0003uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)-4-bromobenzoyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0003uM
3-[6-[3-[bis[2-[4-[[(5S)-5-carboxy-5-[[(1S)-1,3-dicarboxypropyl]carbamoylamino]pentyl]carbamoyl]anilino]-2-oxoethyl]amino]propylamino]-6-oxohexyl]-2-[(1E,3E,5E)-5-(3-ethyl-1,1-dimethyl-6,8-disulfobenzo[e]indol-2-ylidene)penta-1,3-dienyl]-1,1-dimethyl-8-sulfobenzo[e]indol-3-ium-6-sulfonate1374082: Inhibition of PSMA in human LNCaP cell lysates incubated for 2 hrs in presence of N-acetylaspartylglutamate by Amplex red glutamic acid/glutamate oxidase assayki0.0004uM
(2S)-6-[[3-[[(5S)-5-carboxy-5-[[(1S)-1-carboxy-2-[(2-hydroxy-3,4-dioxocyclobuten-1-yl)amino]ethyl]carbamoylamino]pentyl]carbamoyl]-5-fluorobenzoyl]amino]-2-[[(1S)-1-carboxy-2-[(2-hydroxy-3,4-dioxocyclobuten-1-yl)amino]ethyl]carbamoylamino]hexanoic acid1989251: Binding affinity to human recombinant PSMA (unknown origin) assessed as inhibition constant incubated for 60 mins in presence of NAAGki0.0004uM
(2S)-6-[[3-[[(5S)-5-carboxy-5-[[(1S)-1-carboxy-2-[(2-hydroxy-3,4-dioxocyclobuten-1-yl)amino]ethyl]carbamoylamino]pentyl]carbamoyl]-5-iodobenzoyl]amino]-2-[[(1S)-1-carboxy-2-[(2-hydroxy-3,4-dioxocyclobuten-1-yl)amino]ethyl]carbamoylamino]hexanoic acid1989251: Binding affinity to human recombinant PSMA (unknown origin) assessed as inhibition constant incubated for 60 mins in presence of NAAGki0.0004uM
(2S)-2-[[(1S)-1-carboxy-5-[(5-iodopyridine-3-carbonyl)amino]pentyl]carbamoylamino]pentanedioic acid409345: Inhibition of PSMA in human LNCaP cell extract using [3H]NAAG by radiometric assayki0.0004uM
2-[[[(3S)-3-[3-[3,5-bis[3-[[(1S)-1-carboxy-3-[2,4-dicarboxybutyl(hydroxy)phosphoryl]propyl]amino]-3-oxopropyl]-7-[6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoylamino]-1-adamantyl]propanoylamino]-3-carboxypropyl]-hydroxyphosphoryl]methyl]pentanedioic acid411795: Binding affinity to PSMA in human LNCaP cells assessed as cell surface binding in Tris-buffered saline bufferkd0.0004uM
potassium 5-[[(1S)-1-carboxy-4-[[(1S)-1-carboxy-2-[[[(1S)-1,3-dicarboxypropyl]amino]-hydroxyphosphoryl]oxyethyl]amino]-4-oxobutyl]carbamoyl]-2-(3-hydroxy-6-oxoxanthen-9-yl)benzoate631983: Inhibition of PSMA using N-[4-(phenylazo)-benzoyl]-glutamyl-gamma-glutamic acid as substrate after 15 mins by HPLC analysisic500.0004uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)phenyl]carbamoylamino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0004uM
(2S)-2-[[(1S)-1-carboxy-3-methylbutyl]carbamoylamino]pentanedioic acid1515290: Inhibition of N-terminally tagged human recombinant GCP2 (44 to 750 residues) extracellular domain expressed in Drosophila melanogaster S2 cells preincubated for 20 mins followed by [3H]-NAAG addition and measured after 20 mins by liquid scintillation counting assayic500.0005uM
(2S)-2-[[(1S)-1-carboxy-5-[(3-fluorophenyl)methyl-methylamino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0005uM
(2S)-2-[[(1S)-1-carboxy-5-[[4-[[[4-[[[4-[[[2-[4,7,10-tris(carboxymethyl)-1,4,7,10-tetrazacyclododec-1-yl]acetyl]amino]methyl]benzoyl]amino]methyl]benzoyl]amino]methyl]benzoyl]amino]pentyl]carbamoylamino]pentanedioic acid1949343: Binding affinity to PSMA in human LNCaP cells after 45 mins in presence of 68Ga-labeled PSMA-10 by gamma counting assayki0.0005uM
(2S)-2-[[(1S)-1-carboxy-5-[[(2S)-3-(4-phenylphenyl)-2-[[2-[4,7,10-tris(carboxymethyl)-1,4,7,10-tetrazacyclododec-1-yl]acetyl]amino]propanoyl]amino]pentyl]carbamoylamino]pentanedioic acid1949343: Binding affinity to PSMA in human LNCaP cells after 45 mins in presence of 68Ga-labeled PSMA-10 by gamma counting assayki0.0005uM
tetrasodium;4-[[[(3S)-3-[3-[3,5-bis[3-[[(1S)-1-carboxy-3-[2,4-dicarboxybutyl(hydroxy)phosphoryl]propyl]amino]-3-oxopropyl]-7-[6-[6-[2-[(E)-2-[(3E)-3-[(2E)-2-[3,3-dimethyl-5-sulfonato-1-(4-sulfonatobutyl)indol-2-ylidene]ethylidene]-2-(4-sulfonatophenoxy)cyclohexen-1-yl]ethenyl]-3,3-dimethyl-5-sulfonatoindol-1-ium-1-yl]hexanoylamino]hexanoylamino]-1-adamantyl]propanoylamino]-3-carboxypropyl]-hydroxyphosphoryl]methyl]-5-hydroxy-5-oxopentanoate411795: Binding affinity to PSMA in human LNCaP cells assessed as cell surface binding in Tris-buffered saline bufferkd0.0005uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)benzoyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0006uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)-4-iodobenzoyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0006uM
(2S)-2-[[(1S)-1-carboxy-3-methylbutyl]carbamoyloxy]pentanedioic acid1515290: Inhibition of N-terminally tagged human recombinant GCP2 (44 to 750 residues) extracellular domain expressed in Drosophila melanogaster S2 cells preincubated for 20 mins followed by [3H]-NAAG addition and measured after 20 mins by liquid scintillation counting assayic500.0006uM
3-[6-[[4-[[(5S)-5-carboxy-5-[[(1S)-1,3-dicarboxypropyl]carbamoylamino]pentyl]amino]-4-oxobutyl]amino]-6-oxohexyl]-2-[(1E,3E,5E)-5-(3-ethyl-1,1-dimethyl-6,8-disulfobenzo[e]indol-2-ylidene)penta-1,3-dienyl]-1,1-dimethyl-8-sulfobenzo[e]indol-3-ium-6-sulfonate1374082: Inhibition of PSMA in human LNCaP cell lysates incubated for 2 hrs in presence of N-acetylaspartylglutamate by Amplex red glutamic acid/glutamate oxidase assayki0.0006uM
(2S)-2-[[(1S)-1-carboxy-5-[(4-fluorophenyl)methyl-methylamino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0006uM
potassium [(2S)-2-[[(4S)-4-amino-4-carboxybutanoyl]amino]-2-carboxyethyl] [(1S)-1,3-dicarboxypropyl] phosphate538387: Inhibition of PSMA in human LNCaP cellsic500.0006uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)-4-chlorobenzoyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0007uM
(4E)-4-[[1-[6-[[(5S)-5-carboxy-5-[[(1S)-1,3-dicarboxypropyl]carbamoylamino]pentyl]amino]-6-oxohexyl]-3,3-dimethylindol-1-ium-2-yl]methylidene]-2-[(Z)-[1-[6-[[(5S)-5-carboxy-5-[[(1S)-1,3-dicarboxypropyl]carbamoylamino]pentyl]amino]-6-oxohexyl]-3,3-dimethylindol-2-ylidene]methyl]-3-oxocyclobuten-1-olate1989250: Binding affinity to PSMA (unknown origin) assessed as inhibition constantki0.0007uM
tetralithium;(2S)-2-(phosphonatoamino)pentanedioate309919: Inhibition of PSMAic500.0009uM
(2S)-2-[[(1S)-1-carboxy-5-[2-[(4-fluorobenzoyl)amino]ethylamino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0009uM
(2S)-2-[[(1S)-1-carboxy-2-[(2-hydroxy-3,4-dioxocyclobuten-1-yl)amino]ethyl]carbamoylamino]-6-[(4-fluorobenzoyl)amino]hexanoic acid1989251: Binding affinity to human recombinant PSMA (unknown origin) assessed as inhibition constant incubated for 60 mins in presence of NAAGki0.0009uM
(2S)-2-[[(1S)-1-carboxy-4-[(4-fluorobenzoyl)amino]butyl]carbamoylamino]pentanedioic acid1989251: Binding affinity to human recombinant PSMA (unknown origin) assessed as inhibition constant incubated for 60 mins in presence of NAAGki0.0009uM
(2S)-2-[[(1S)-5-[[2-(2-acetamidoethoxy)-4-fluorobenzoyl]amino]-1-carboxypentyl]carbamoylamino]pentanedioic acid1180461: Inhibition of human recombinant N-terminal Avi-tagged glutamate carboxypeptidase 2 extracellular domain (44 to 750 amino acids) using pteroyl-di-L-glutamate substrate by HPLC methodki0.0010uM
(2S)-2-[[(1S)-1-carboxy-5-[(6-fluoro-3-pyridinyl)amino]-5-oxopentyl]carbamoylamino]pentanedioic acid1423726: Inhibition of recombinant human PSMA using [3H]NAAG as substrate preincubated for 15 mins followed by substrate addition measured after 20 mins by liquid scintillation methodic500.0010uM

CTD chemical–gene interactions

37 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Metriboloneaffects expression, decreases expression, decreases reaction, affects cotreatment5
Cyclosporinedecreases expression, increases expression3
Arsenicaffects response to substance, affects reaction, affects abundance, affects metabolic processing2
tetramethrindecreases expression1
phentin acetateincreases expression1
arseniteincreases methylation1
tris(1,3-dichloro-2-propyl)phosphateaffects cotreatment, affects expression1
sodium arsenitedecreases expression1
monomethylarsonic acidaffects abundance, affects metabolic processing, affects response to substance1
perfluorooctanoic acidincreases expression1
isospaglumic acidaffects binding, decreases reaction1
CGP 52608affects binding, increases reaction1
acylineincreases expression1
difenoconazoleincreases expression1
bombesin (7-14)affects binding, decreases reaction1
2,2’,4,4’-tetrabromodiphenyl etherincreases expression1
1,2-dibromo-4-(1,2-dibromoethyl)cyclohexanedecreases reaction, increases expression, decreases expression1
2-(3-(1,3-dicarboxypropyl)ureido)pentanedioic aciddecreases reaction, affects binding1
1-(1,3-carboxypropyl)-4,7-carboxymethyl-1,4,7-triazacyclononanedecreases reaction, affects binding1
Benzo(a)pyrenedecreases methylation, increases methylation1
Calcitriolaffects reaction, decreases expression1
Copperaffects binding, decreases reaction1
Dichlorodiphenyl Dichloroethylenedecreases reaction, increases expression, decreases expression1
DDTdecreases expression, decreases reaction, increases expression1
Endosulfanaffects cotreatment, decreases expression1
Nickeldecreases expression1
Oxygenincreases expression1
Pentobarbitalincreases response to substance1
Seleniumaffects cotreatment, decreases expression1
Silicon Dioxidedecreases expression1

ChEMBL screening assays

139 unique, capped per target: 131 binding, 7 admet, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1020694BindingBinding affinity to PSMA in human PC3 cells assessed as cell surface binding in Tris-buffered saline bufferMultivalent scaffolds for affinity maturation of small molecule cell surface binders and their application to prostate tumor targeting. — J Med Chem
CHEMBL4393043ADMETBinding affinity to PSMA in human LNCAP cells assessed as doxorubicin release in cytoplasm measured after 48 hrsSynthesis and biological evaluation of Doxorubicin-containing conjugate targeting PSMA. — Bioorg Med Chem Lett
CHEMBL765765FunctionalConcentration required for inhibition of 50% of the cleavage of para-nitroanilide from MeO-Suc-Arg-Pro-Tyr-pNA.HCl by Prostate specific antigen PSADesign and synthesis of novel monocyclic -lactam inhibitors of prostate specific antigen — Bioorg Med Chem Lett

Cellosaurus cell lines

8 cell lines: 6 cancer cell line, 1 spontaneously immortalized cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B8G7Abcam HCT 116 FOLH1 KOCancer cell lineMale
CVCL_B9IGAbcam A-549 FOLH1 KOCancer cell lineMale
CVCL_D3N6PC-3 9-7-11Cancer cell lineMale
CVCL_E6QGGenomeditech CHO-K1 H_FOLH1(PSMA)Spontaneously immortalized cell lineFemale
CVCL_E9XKPC3-PIPCancer cell lineMale
CVCL_E9XYPC3-FOLH1Cancer cell lineMale
CVCL_SN83HAP1 FOLH1 (-)Cancer cell lineMale
CVCL_UE40293T human FOLH1Transformed cell lineFemale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.