FOXF2-AS1

Summary

FOXF2-AS1 (FOXF2 antisense RNA 1, HGNC:50670) is a long non-coding RNA gene on chromosome 6p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50670
Approved symbol	FOXF2-AS1
Name	FOXF2 antisense RNA 1
Location	6p25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00012639
Ensembl gene	ENSG00000281809
Ensembl biotype	lncRNA
Entrez	105374880
RNAcentral	URS00026A24FE — lncRNA, 1352 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000627866, ENST00000721686, ENST00000721687, ENST00000721688, ENST00000721689, ENST00000721690, ENST00000721691, ENST00000721692, ENST00000721693, ENST00000721694, ENST00000721695, ENST00000721696

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000627866 — 2 exons

Exon	Start	End
ENSE00003767773	1321698	1321986
ENSE00003768946	1323899	1324022

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 95.75.

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.75	gold quality
lower esophagus muscularis layer	UBERON:0035833	76.85	gold quality
lower esophagus	UBERON:0013473	76.75	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	74.28	gold quality
colonic epithelium	UBERON:0000397	72.68	gold quality
left testis	UBERON:0004533	72.10	gold quality
right testis	UBERON:0004534	71.70	gold quality
testis	UBERON:0000473	71.06	gold quality
cortical plate	UBERON:0005343	70.72	gold quality
mucosa of stomach	UBERON:0001199	69.76	gold quality
esophagus	UBERON:0001043	66.26	gold quality
muscle layer of sigmoid colon	UBERON:0035805	65.92	gold quality
lymph node	UBERON:0000029	65.20	gold quality
right lung	UBERON:0002167	64.60	gold quality
mucosa of transverse colon	UBERON:0004991	63.35	gold quality
colon	UBERON:0001155	62.69	gold quality
urinary bladder	UBERON:0001255	61.64	gold quality
fundus of stomach	UBERON:0001160	61.05	gold quality
intestine	UBERON:0000160	60.72	gold quality
transverse colon	UBERON:0001157	60.26	gold quality
rectum	UBERON:0001052	59.80	gold quality
duodenum	UBERON:0002114	58.95	gold quality
body of stomach	UBERON:0001161	58.64	gold quality
gall bladder	UBERON:0002110	58.46	gold quality
stomach	UBERON:0000945	58.44	gold quality
prefrontal cortex	UBERON:0000451	58.07	gold quality
lung	UBERON:0002048	57.91	gold quality
upper lobe of left lung	UBERON:0008952	57.11	gold quality
islet of Langerhans	UBERON:0000006	56.71	gold quality
blood	UBERON:0000178	56.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.