FOXN3-AS3

Summary

FOXN3-AS3 (FOXN3 antisense RNA 3, HGNC:58157) is a long non-coding RNA gene on chromosome 14q32.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58157
Approved symbol	FOXN3-AS3
Name	FOXN3 antisense RNA 3
Location	14q32.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258752
Ensembl biotype	lncRNA
Entrez	101928817
RNAcentral	URS00026A202C — lncRNA, 822 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000555407, ENST00000556942, ENST00000662923, ENST00000750872, ENST00000750873

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000555407 — 2 exons

Exon	Start	End
ENSE00002457154	89350285	89350493
ENSE00002466843	89353402	89353793

Expression profiles

Bgee: expression breadth ubiquitous, 162 present calls, max score 99.34.

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	99.34	gold quality
bronchial epithelial cell	CL:0002328	98.93	gold quality
oviduct epithelium	UBERON:0004804	98.33	gold quality
bronchus	UBERON:0002185	98.06	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	97.42	gold quality
mucosa of paranasal sinus	UBERON:0005030	93.02	gold quality
fallopian tube	UBERON:0003889	91.13	gold quality
epithelium of nasopharynx	UBERON:0001951	90.64	gold quality
buccal mucosa cell	CL:0002336	89.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.12	gold quality
nasal cavity epithelium	UBERON:0005384	83.30	gold quality
trachea	UBERON:0003126	79.35	gold quality
nasal cavity mucosa	UBERON:0001826	78.44	gold quality
bone marrow cell	CL:0002092	77.13	gold quality
colonic epithelium	UBERON:0000397	76.64	gold quality
caput epididymis	UBERON:0004358	76.27	gold quality
right lung	UBERON:0002167	74.52	gold quality
sural nerve	UBERON:0015488	70.46	gold quality
cortical plate	UBERON:0005343	70.29	gold quality
endometrium	UBERON:0001295	69.88	gold quality
left uterine tube	UBERON:0001303	69.56	gold quality
hypothalamus	UBERON:0001898	68.16	gold quality
caudate nucleus	UBERON:0001873	66.53	gold quality
corpus callosum	UBERON:0002336	66.31	gold quality
calcaneal tendon	UBERON:0003701	65.54	gold quality
adrenal tissue	UBERON:0018303	64.72	gold quality
upper lobe of left lung	UBERON:0008952	62.90	gold quality
ganglionic eminence	UBERON:0004023	62.89	gold quality
tendon	UBERON:0000043	62.44	gold quality
lung	UBERON:0002048	62.25	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-MTAB-10287	yes	27.77
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.