FOXP1-AS1

Summary

FOXP1-AS1 (FOXP1 antisense RNA 1, HGNC:41942) is a long non-coding RNA gene on chromosome 3p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41942
Approved symbol	FOXP1-AS1
Name	FOXP1 antisense RNA 1
Location	3p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244203
Ensembl biotype	lncRNA
Entrez	104502416
RNAcentral	URS00007E4596 — lncRNA, 728 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000465742, ENST00000850288, ENST00000850289

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000465742 — 5 exons

Exon	Start	End
ENSE00001824619	71296450	71296507
ENSE00001827856	71289769	71289971
ENSE00001889426	71302728	71302860
ENSE00001915681	71292517	71292640
ENSE00001939409	71305672	71305853

Expression profiles

Bgee: expression breadth ubiquitous, 152 present calls, max score 81.03.

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.03	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.74	gold quality
bone marrow cell	CL:0002092	74.51	gold quality
left testis	UBERON:0004533	74.34	gold quality
colonic epithelium	UBERON:0000397	73.95	gold quality
right testis	UBERON:0004534	73.76	gold quality
testis	UBERON:0000473	71.81	gold quality
sperm	CL:0000019	68.79	silver quality
ventricular zone	UBERON:0003053	65.64	gold quality
sural nerve	UBERON:0015488	63.40	silver quality
hindlimb stylopod muscle	UBERON:0004252	62.98	gold quality
monocyte	CL:0000576	62.45	gold quality
leukocyte	CL:0000738	61.84	gold quality
calcaneal tendon	UBERON:0003701	59.92	gold quality
mucosa of transverse colon	UBERON:0004991	59.92	gold quality
tonsil	UBERON:0002372	57.56	gold quality
apex of heart	UBERON:0002098	55.93	gold quality
ectocervix	UBERON:0012249	55.25	gold quality
blood	UBERON:0000178	53.90	gold quality
tendon	UBERON:0000043	53.37	gold quality
stromal cell of endometrium	CL:0002255	52.86	silver quality
islet of Langerhans	UBERON:0000006	52.37	gold quality
lymph node	UBERON:0000029	52.26	gold quality
bone marrow	UBERON:0002371	52.17	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.87	gold quality
right lobe of liver	UBERON:0001114	51.78	gold quality
uterine cervix	UBERON:0000002	51.70	gold quality
liver	UBERON:0002107	51.33	gold quality
vermiform appendix	UBERON:0001154	51.05	gold quality
minor salivary gland	UBERON:0001830	50.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.40

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.