FOXP1-IT1

Summary

FOXP1-IT1 (FOXP1 intronic transcript 1, HGNC:41335) is a long non-coding RNA gene on chromosome 3p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41335
Approved symbol	FOXP1-IT1
Name	FOXP1 intronic transcript 1
Location	3p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242094
Ensembl biotype	lncRNA
Entrez	100506815
RNAcentral	URS000056D451 — lncRNA, 3539 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000498714

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000498714 — 2 exons

Exon	Start	End
ENSE00001898632	71570255	71572830
ENSE00001913517	71573495	71574457

Expression profiles

Bgee: expression breadth ubiquitous, 201 present calls, max score 94.87.

Top tissues by expression

210 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	94.87	gold quality
buccal mucosa cell	CL:0002336	93.27	gold quality
islet of Langerhans	UBERON:0000006	90.93	gold quality
caecum	UBERON:0001153	88.90	gold quality
lateral globus pallidus	UBERON:0002476	88.69	gold quality
superior surface of tongue	UBERON:0007371	87.11	gold quality
pylorus	UBERON:0001166	86.93	gold quality
cardia of stomach	UBERON:0001162	86.81	gold quality
lymph node	UBERON:0000029	86.76	gold quality
renal medulla	UBERON:0000362	86.58	gold quality
fundus of stomach	UBERON:0001160	86.46	gold quality
nipple	UBERON:0002030	86.23	gold quality
nasal cavity epithelium	UBERON:0005384	85.91	silver quality
trigeminal ganglion	UBERON:0001675	85.81	gold quality
trabecular bone tissue	UBERON:0002483	85.65	gold quality
inferior vagus X ganglion	UBERON:0005363	85.53	gold quality
thymus	UBERON:0002370	85.18	gold quality
upper arm skin	UBERON:0004263	85.08	silver quality
trachea	UBERON:0003126	85.07	gold quality
superficial temporal artery	UBERON:0001614	84.78	gold quality
vena cava	UBERON:0004087	84.37	silver quality
cortex of kidney	UBERON:0001225	84.35	gold quality
adrenal cortex	UBERON:0001235	84.15	gold quality
tongue	UBERON:0001723	83.96	gold quality
anterior cingulate cortex	UBERON:0009835	83.94	gold quality
hypothalamus	UBERON:0001898	83.87	gold quality
coronary artery	UBERON:0001621	83.83	gold quality
substantia nigra pars reticulata	UBERON:0001966	83.56	gold quality
layer of synovial tissue	UBERON:0007616	83.53	gold quality
ventral tegmental area	UBERON:0002691	83.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.