FPR3
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Also known as FPRH1FMLPYRMLP-R-I
Summary
FPR3 (formyl peptide receptor 3, HGNC:3828) is a protein-coding gene on chromosome 19q13.41, encoding N-formyl peptide receptor 3 (P25089). May function as a pattern recognition G-protein coupled receptor (PRR/GPCR) involved in innate recognition of peptides derived from a specific set of bacterial pathogens or host mitochondria as pathogen- and damage-associated molecular patterns (PAMPs and DAMPs).
Predicted to enable N-formyl peptide receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Source: NCBI Gene 2359 — RefSeq curated summary.
At a glance
- GWAS associations: 20
- Clinical variants (ClinVar): 39 total
- Druggable target: yes — 10 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002030
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3828 |
| Approved symbol | FPR3 |
| Name | formyl peptide receptor 3 |
| Location | 19q13.41 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FPRH1, FMLPY, RMLP-R-I |
| Ensembl gene | ENSG00000187474 |
| Ensembl biotype | protein_coding |
| OMIM | 136539 |
| Entrez | 2359 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 5 protein_coding
ENST00000339223, ENST00000595991, ENST00000901092, ENST00000901093, ENST00000957103
RefSeq mRNA: 1 — MANE Select: NM_002030
NM_002030
CCDS: CCDS12841
Canonical transcript exons
ENST00000339223 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001379510 | 51823739 | 51826190 |
| ENSE00001404479 | 51795157 | 51795331 |
Expression profiles
Bgee: expression breadth ubiquitous, 194 present calls, max score 87.17.
FANTOM5 (CAGE): breadth broad, TPM avg 6.1561 / max 293.8163, expressed in 319 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 177269 | 5.4744 | 312 |
| 177268 | 0.5914 | 143 |
| 177270 | 0.0903 | 53 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gall bladder | UBERON:0002110 | 87.17 | gold quality |
| rectum | UBERON:0001052 | 85.53 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.57 | gold quality |
| amniotic fluid | UBERON:0000173 | 83.01 | gold quality |
| right coronary artery | UBERON:0001625 | 82.94 | gold quality |
| synovial joint | UBERON:0002217 | 82.46 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 82.37 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 82.32 | gold quality |
| vermiform appendix | UBERON:0001154 | 81.31 | gold quality |
| calcaneal tendon | UBERON:0003701 | 77.56 | gold quality |
| caecum | UBERON:0001153 | 77.49 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 77.49 | gold quality |
| lymph node | UBERON:0000029 | 77.43 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 77.05 | gold quality |
| upper lobe of lung | UBERON:0008948 | 76.85 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 76.69 | gold quality |
| left adrenal gland | UBERON:0001234 | 76.26 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 75.82 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 75.62 | gold quality |
| lower lobe of lung | UBERON:0008949 | 75.46 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 75.30 | gold quality |
| decidua | UBERON:0002450 | 75.21 | gold quality |
| left coronary artery | UBERON:0001626 | 75.01 | gold quality |
| colonic mucosa | UBERON:0000317 | 74.88 | gold quality |
| right adrenal gland | UBERON:0001233 | 74.82 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 74.56 | gold quality |
| omental fat pad | UBERON:0010414 | 74.56 | gold quality |
| coronary artery | UBERON:0001621 | 74.50 | gold quality |
| peritoneum | UBERON:0002358 | 74.50 | gold quality |
| adrenal cortex | UBERON:0001235 | 74.48 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8410 | yes | 40.31 |
| E-ANND-3 | yes | 18.91 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
65 targeting FPR3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-6755-5P | 99.95 | 65.59 | 464 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-7154-5P | 99.69 | 70.52 | 1900 |
| HSA-MIR-4470 | 99.66 | 69.35 | 1767 |
| HSA-MIR-4804-3P | 99.65 | 67.78 | 866 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-6757-3P | 99.63 | 66.88 | 1089 |
| HSA-MIR-217-5P | 99.49 | 69.93 | 1419 |
| HSA-MIR-12131 | 99.48 | 68.72 | 1673 |
| HSA-MIR-766-5P | 99.47 | 67.91 | 2225 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-4735-5P | 99.43 | 68.49 | 1780 |
| HSA-MIR-548AV-3P | 99.43 | 68.50 | 1721 |
Literature-anchored findings (GeneRIF, showing 20)
- Human dendritic cells express functional FPRL2 throughout maturation. FPRL2 & its endogenous ligand may be involved in regulating DC trafficking during Ag uptake & processing s well as the T-cell-stimulating phase of the immune responses. (PMID:12223529)
- investigated the direct effect of LXA4 as well as the effect on agonist-induced biological responses using transfected HL-60 cells expressing FPR, FPRL1 or FPRL2 (PMID:12410796)
- an annexin 1 peptide can activate FPR, FPRL1, and FPRL2; results indicate that annexin 1 participates in regulating leukocyte emigration into inflamed tissue by activating and desensitizing different receptors of the FPR family. (PMID:15187149)
- Results show that humanin (HN) acts as a ligand for formyl peptide receptor-like 1 (FPRL1) and 2 (FPRL2). (PMID:15465011)
- Activation of FPRL2 inhibits lipopolysaccharide-induced dendritic cell maturation. (PMID:16002663)
- However, F2L inhibits formyl peptide receptor (FPR) and FPRL1 activities, resulting in the inhibition of intracellular calcium increases, and superoxide generation induced by N-formyl-Met-Leu-Phe, MMK-1, or Trp-Lys-Tyr-Met-Val-d-Met in neutrophils. (PMID:17577578)
- FPRL2 is expressed and functional in macrophages differentiated from monocytes in vitro in different conditions (PMID:19342677)
- Human monocytes express FPR1, FPR2, and FPR3; human neutrophils express FPR1 and FPR2, but not FPR3. (PMID:19843937)
- Results show that uPAR expression regulates the adhesive and migratory ability of CXCR4-expressing cells through a mechanism involving fMLP receptors and alpha-v integrins. (PMID:20972812)
- N-formyl peptide receptor 3 (FPR3) departs from the homologous FPR2/ALX receptor with regard to the major processes governing chemoattractant receptor regulation, expression at the cell surface, and phosphorylation. (PMID:21543323)
- F2L peptide, derived from the processing of nanomolar concentrations of heme-binding protein (HEBP)1, is active on FPR3 and able to induce recruitment of FPR3-expressing monocytes, macrophages, and mouse neutrophils (PMID:21709160)
- transcriptional variations of FPR3 occur by an alternative promoter during primate evolution. (PMID:21717223)
- The demonstrated proper folding and functionality of the cell-free produced human FPR3 opens a new avenue for the fast and efficient generation of human FPRs (and even other GPCRs) for structural and functional analysis. (PMID:23746112)
- The H. pylori-derived peptide Hp(2-20) stimulated eosinophil migration through the engagement of FPR2 and FPR3, and also induced production of VEGF-A and TGF-beta, two key mediators of tissue remodelling. (PMID:24067461)
- Taken together, our results suggest that intracellular FPR in naive CD4 T cells and surface FPRs in activated CD4 T cells might regulate immune responses by regulating CD4 T cell activity. (PMID:29427663)
- These findings provide evidence for defective FPR2/3 and annexin A1 expressions that, associated with decreased M2a polarization, might be involved in the development of cigarette smoking induced persistent airflow limitation in chronic obstructive pulmonary disease. (PMID:29544524)
- Low FPR3 expression is associated with obstructive sleep apnea. (PMID:31116781)
- D-Peptide analogues of Boc-Phe-Leu-Phe-Leu-Phe-COOH induce neovascularization via endothelial N-formyl peptide receptor 3. (PMID:32152757)
- Formyl peptide receptor 2 is an emerging modulator of inflammation in the liver. (PMID:36750693)
- FPR3 reprograms glycolytic metabolism and stemness in gastric cancer via calcium-NFATc1 pathway. (PMID:38614385)
Cross-species orthologs
0 orthologs
Paralogs (8): C5AR2 (ENSG00000134830), GPR32 (ENSG00000142511), FPR2 (ENSG00000171049), FPR1 (ENSG00000171051), C3AR1 (ENSG00000171860), CMKLR1 (ENSG00000174600), C5AR1 (ENSG00000197405), GPR33 (ENSG00000214943)
Protein
Protein identifiers
N-formyl peptide receptor 3 — P25089 (reviewed: P25089)
Alternative names: FMLP-related receptor II, Formyl peptide receptor-like 2
All UniProt accessions (2): P25089, Q6L5J4
UniProt curated annotations — full annotation on UniProt →
Function. May function as a pattern recognition G-protein coupled receptor (PRR/GPCR) involved in innate recognition of peptides derived from a specific set of bacterial pathogens or host mitochondria as pathogen- and damage-associated molecular patterns (PAMPs and DAMPs). Low affinity receptor for a restricted repertoire of bacterial N-formylated peptides including fMKKIML from L. monocytogenes and fMPKLNR from V. cholerae. Contrary to FPR1 and FPR2 does not act as a receptor for fMLF peptide. High affinity receptor for N-acetylated F2L peptide derived from the cleavage of heme-binding protein HEBP1. F2L peptide binding may trigger chemotaxis of monocytes and dendritic cells to facilitate tissue repair. Low affinity receptor for N-acetylated Ac2-26 peptide derived from ANXA1, an anti-inflammatory and pro-resolving agonist. Ac2-26 peptide binding can direct myeloid cell chemotaxis within the inflammatory site where ANXA1 is at high concentrations, but it can also lead to receptor desensitization to limit the inflammatory response. Receptor for MT-RNR2/humanin, a mitochondrial-derived peptide that has an anti-inflammatory role in resolution of inflammation. Peptide binding leads to conformational changes coupled to heterotrimeric G(i) protein signaling. Upon GDP to GTP conversion, G(i)-alpha subunit dissociates from G-beta and G-gamma subunits. Free G(i)-alpha subunit inhibits cyclic adenylate cyclase and cAMP synthesis whereas the G-beta and G-gamma dimer activates downstream phospholipase C-beta and phosphoinositide 3-kinase signaling cascades leading to Ca(2+) influx.
Subunit / interactions. Heterodimer with FPR1.
Subcellular location. Cell membrane.
Tissue specificity. Detected in various tissues with highest expression in lung. Expressed in immature dendritic cells (at protein level).
Similarity. Belongs to the G-protein coupled receptor 1 family.
RefSeq proteins (1): NP_002021* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000276 | GPCR_Rhodpsn | Family |
| IPR000826 | Formyl_rcpt-rel | Family |
| IPR017452 | GPCR_Rhodpsn_7TM | Domain |
Pfam: PF00001
UniProt features (24 total): topological domain 8, transmembrane region 7, sequence conflict 3, glycosylation site 2, chain 1, region of interest 1, compositionally biased region 1, disulfide bond 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P25089-F1 | 83.62 | 0.58 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 98–176
Glycosylation sites (2): 4, 10
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-418594 | G alpha (i) signalling events |
| R-HSA-444473 | Formyl peptide receptors bind formyl peptides and many other ligands |
MSigDB gene sets: 146 (showing top):
GOBP_INFLAMMATORY_RESPONSE, GOBP_TAXIS, REACTOME_PEPTIDE_LIGAND_BINDING_RECEPTORS, GOBP_REGULATION_OF_IMMUNE_RESPONSE, KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION, MODULE_123, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOMF_PEPTIDE_RECEPTOR_ACTIVITY, GOBP_PHOSPHOLIPASE_C_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, PID_UPA_UPAR_PATHWAY, REACTOME_CLASS_A_1_RHODOPSIN_LIKE_RECEPTORS, GOMF_TRANSMEMBRANE_SIGNALING_RECEPTOR_ACTIVITY, GOMF_G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY, GOBP_ACTIVATION_OF_IMMUNE_RESPONSE, VERHAAK_GLIOBLASTOMA_MESENCHYMAL
GO Biological Process (9): complement receptor mediated signaling pathway (GO:0002430), chemotaxis (GO:0006935), inflammatory response (GO:0006954), signal transduction (GO:0007165), phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), positive regulation of cytosolic calcium ion concentration (GO:0007204), cell communication (GO:0007154), G protein-coupled receptor signaling pathway (GO:0007186), signaling (GO:0023052)
GO Molecular Function (4): complement receptor activity (GO:0004875), N-formyl peptide receptor activity (GO:0004982), G protein-coupled receptor activity (GO:0004930), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 1 |
| Peptide ligand-binding receptors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 2 |
| G protein-coupled receptor signaling pathway | 2 |
| transmembrane signaling receptor activity | 2 |
| immune response-activating cell surface receptor signaling pathway | 1 |
| response to chemical | 1 |
| taxis | 1 |
| defense response | 1 |
| cell communication | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| phospholipase C activator activity | 1 |
| regulation of biological quality | 1 |
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| regulation of biological process | 1 |
| complement binding | 1 |
| complement receptor mediated signaling pathway | 1 |
| immune receptor activity | 1 |
| G protein-coupled peptide receptor activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
936 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FPR3 | HEBP1 | Q9NRV9 | 946 |
| FPR3 | ANXA1 | P04083 | 892 |
| FPR3 | CAMP | P49913 | 732 |
| FPR3 | PRNP | P04156 | 489 |
| FPR3 | VSTM2L | Q96N03 | 489 |
| FPR3 | GPR37 | O15354 | 457 |
| FPR3 | CXCL8 | P10145 | 457 |
| FPR3 | CXCL2 | P19875 | 451 |
| FPR3 | CXCR2 | P25025 | 450 |
| FPR3 | CCL19 | Q99731 | 427 |
| FPR3 | CXCL14 | O95715 | 426 |
| FPR3 | CCR1 | P32246 | 422 |
| FPR3 | CXCL9 | Q07325 | 422 |
| FPR3 | PLA2G7 | Q13093 | 417 |
| FPR3 | FCER1G | P30273 | 416 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RAMP1 | FPR3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FPR3 | RAMP2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FPR3 | RAMP3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FPR3 | RAMP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RAMP2 | FPR3 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (4): FPR3 (Co-fractionation), FPR3 (Co-fractionation), FPR3 (Co-fractionation), FPR3 (Co-fractionation)
ESM2 similar proteins: A4FUQ5, B9VR26, O08790, O35786, O70129, O75388, O88416, O88536, O88537, O97664, P0C7U4, P21462, P21730, P25089, P25090, P30992, P30993, P33766, P35343, P35407, P46090, P46091, P79175, P79176, P79177, P79178, P79188, P79189, P79190, P79191, P79234, P79235, P79236, P79237, P79240, P79241, P79242, P79243, P97468, P97520
Diamond homologs: A4FUQ5, B1PHQ8, B9VR26, O08565, O08790, O35210, O35786, O62747, O70129, O75388, O77590, O88416, O88536, O88537, O97571, O97664, P0C7U4, P0C7U5, P21462, P21730, P25025, P25089, P25090, P25095, P25104, P28646, P29089, P29754, P29755, P30555, P30556, P30872, P30873, P30937, P30992, P30993, P31391, P33766, P34976, P35373
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ANXA1 | “up-regulates activity” | FPR3 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
39 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 7 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
366 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:51817762:T:TA | acceptor_gain | 1.0000 |
| 19:51817766:A:AG | acceptor_gain | 1.0000 |
| 19:51817767:A:G | acceptor_gain | 1.0000 |
| 19:51795318:GATC:G | donor_gain | 0.9900 |
| 19:51795329:GTG:G | donor_gain | 0.9900 |
| 19:51795329:GTGGT:G | donor_loss | 0.9900 |
| 19:51795331:GGTA:G | donor_loss | 0.9900 |
| 19:51795332:GTA:G | donor_loss | 0.9900 |
| 19:51795333:T:G | donor_loss | 0.9900 |
| 19:51795332:G:GG | donor_gain | 0.9800 |
| 19:51822852:A:AG | donor_gain | 0.9800 |
| 19:51795328:GGTG:G | donor_gain | 0.9700 |
| 19:51795329:GTGG:G | donor_gain | 0.9700 |
| 19:51795330:TGGT:T | donor_gain | 0.9700 |
| 19:51795331:G:GA | donor_gain | 0.9700 |
| 19:51822797:G:GG | donor_gain | 0.9700 |
| 19:51795327:TGGTG:T | donor_gain | 0.9600 |
| 19:51795328:GGTGG:G | donor_gain | 0.9600 |
| 19:51795330:TG:T | donor_gain | 0.9400 |
| 19:51795331:GG:G | donor_gain | 0.9400 |
| 19:51795334:AAG:A | donor_loss | 0.9300 |
| 19:51822846:G:GT | donor_gain | 0.9200 |
| 19:51822801:A:G | donor_gain | 0.9100 |
| 19:51795313:A:T | donor_gain | 0.8900 |
| 19:51817773:T:A | acceptor_gain | 0.8900 |
| 19:51822796:A:G | donor_gain | 0.8800 |
| 19:51822848:T:G | donor_gain | 0.8800 |
| 19:51816989:T:TA | acceptor_gain | 0.8500 |
| 19:51822794:A:T | donor_gain | 0.8400 |
| 19:51795312:G:GT | donor_gain | 0.8000 |
AlphaMissense
2336 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:51824021:G:C | W91C | 0.993 |
| 19:51824021:G:T | W91C | 0.993 |
| 19:51824019:T:A | W91R | 0.991 |
| 19:51824019:T:C | W91R | 0.991 |
| 19:51824376:T:C | F210L | 0.977 |
| 19:51824378:C:A | F210L | 0.977 |
| 19:51824378:C:G | F210L | 0.977 |
| 19:51824040:T:A | C98S | 0.975 |
| 19:51824041:G:C | C98S | 0.975 |
| 19:51824496:T:C | F250L | 0.973 |
| 19:51824498:C:A | F250L | 0.973 |
| 19:51824498:C:G | F250L | 0.973 |
| 19:51823984:C:G | P79R | 0.970 |
| 19:51823880:T:A | N44K | 0.969 |
| 19:51823880:T:G | N44K | 0.969 |
| 19:51823971:A:C | S75R | 0.969 |
| 19:51823973:T:A | S75R | 0.969 |
| 19:51823973:T:G | S75R | 0.969 |
| 19:51824276:T:G | C176W | 0.969 |
| 19:51824274:T:A | C176S | 0.968 |
| 19:51824275:G:C | C176S | 0.968 |
| 19:51824631:A:C | S295R | 0.968 |
| 19:51824633:C:A | S295R | 0.968 |
| 19:51824633:C:G | S295R | 0.968 |
| 19:51824196:T:A | W150R | 0.967 |
| 19:51824196:T:C | W150R | 0.967 |
| 19:51824082:A:C | S112R | 0.966 |
| 19:51824084:T:A | S112R | 0.966 |
| 19:51824084:T:G | S112R | 0.966 |
| 19:51823961:C:A | D71E | 0.962 |
dbSNP variants (sampled 300 via entrez): RS1000029854 (19:51814204 T>C), RS1000325392 (19:51820648 G>A,C), RS1000369472 (19:51796193 G>T), RS1000468745 (19:51801122 G>A,T), RS1000508464 (19:51815866 AAAAAAG>A), RS1000567317 (19:51798329 G>A), RS1000671429 (19:51803474 C>T), RS1000810332 (19:51807586 T>C), RS1000854691 (19:51797037 C>A), RS1000897721 (19:51802780 T>C), RS1000968561 (19:51797307 C>A), RS1001040854 (19:51815543 T>C), RS1001170675 (19:51799266 G>A), RS1001186391 (19:51813076 G>A), RS1001426566 (19:51794368 G>T)
Disease associations
OMIM: gene MIM:136539 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
20 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004623_39 | Neutrophil percentage of granulocytes | 7.000000e-09 |
| GCST004866_7 | Alopecia areata | 6.000000e-06 |
| GCST005531_84 | Multiple sclerosis | 3.000000e-06 |
| GCST005760_1 | Dimensional psychopathology (Cognitive) | 3.000000e-08 |
| GCST006611_77 | HDL cholesterol | 3.000000e-11 |
| GCST007277_24 | Tourette syndrome | 9.000000e-07 |
| GCST008070_7 | HDL cholesterol levels | 2.000000e-06 |
| GCST008075_116 | HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 8.000000e-16 |
| GCST008075_56 | HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 2.000000e-12 |
| GCST008084_229 | HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 1.000000e-18 |
| GCST008084_7 | HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 9.000000e-16 |
| GCST008085_109 | HDL cholesterol levels in current drinkers | 4.000000e-06 |
| GCST008085_166 | HDL cholesterol levels in current drinkers | 1.000000e-08 |
| GCST010043_75 | Asthma | 3.000000e-08 |
| GCST010241_62 | Apolipoprotein A1 levels | 3.000000e-14 |
| GCST010242_6 | HDL cholesterol levels | 8.000000e-18 |
| GCST010796_4981 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST90002381_356 | Eosinophil count | 3.000000e-18 |
| GCST90002382_526 | Eosinophil percentage of white cells | 1.000000e-18 |
| GCST90002399_445 | Neutrophil percentage of white cells | 8.000000e-10 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007994 | neutrophil percentage of granulocytes |
| EFO:0009098 | cognitive domain measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004329 | alcohol drinking |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004327 | electrocardiography |
| EFO:0004842 | eosinophil count |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0007990 | neutrophil percentage of leukocytes |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5646 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
10 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 79,309 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1200492 | NEFAZODONE HYDROCHLORIDE | 4 | 5,428 |
| CHEMBL1200776 | CINACALCET HYDROCHLORIDE | 4 | 1,220 |
| CHEMBL1263 | SALMETEROL | 4 | 40,383 |
| CHEMBL1615374 | VILAZODONE HYDROCHLORIDE | 4 | 432 |
| CHEMBL398435 | TICAGRELOR | 4 | 2,956 |
| CHEMBL567 | PERPHENAZINE | 4 | 21,883 |
| CHEMBL506981 | REMINERTANT | 3 | 235 |
| CHEMBL232656 | BX 471 FREE BASE | 2 | 191 |
| CHEMBL267777 | RITANSERIN | 2 | 4,779 |
| CHEMBL405355 | NIGULDIPINE | 2 | 1,802 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: gpcr — Formylpeptide receptors
Most potent curated ligand interactions (9 total), top 9:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| humanin | Full agonist | 8.95 | pEC50 |
| LXA4 | Full agonist | 8.82 | pKd |
| WKYMVm | Full agonist | 8.52 | pEC50 |
| F2L | Full agonist | 8.2 | pEC50 |
| F2L-[125I]Tyr | Full agonist | 8.0 | pKd |
| annexin I-(2-26) | Full agonist | 7.0 | pEC50 |
| fMet-Met-Tyr-Ala-Leu-Phe | Full agonist | 6.0 | pEC50 |
| WRWWWW | Antagonist | 6.0 | pIC50 |
| Hp(2-20) | Full agonist | 5.0 | pEC50 |
ChEMBL bioactivities
415 potent at pChembl≥5 of 428 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
PubChem BioAssay actives
2 with measured affinity, of 99 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S)-6-amino-2-[[(2S)-2-amino-3-(1H-indol-3-yl)propanoyl]amino]-N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2R)-1-amino-4-methylsulfanyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-4-methylsulfanyl-1-oxobutan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]hexanamide | 428659: Agonist activity at FPRL2 expressed in human HL60 cells assessed as induction of intracellular calcium flux by FLIPR3 calcium assay | ec50 | 0.0100 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-formamido-4-methylsulfanylbutanoyl]amino]-4-methylpentanoyl]amino]-3-phenylpropanoic acid | 428659: Agonist activity at FPRL2 expressed in human HL60 cells assessed as induction of intracellular calcium flux by FLIPR3 calcium assay | ec50 | 1.9000 | uM |
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aflatoxin B2 | increases methylation | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression, affects response to substance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| beta-hydroxy simvastatin acid | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Lipopolysaccharides | decreases expression, affects response to substance, increases expression | 1 |
| Nickel | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
ChEMBL screening assays
8 unique, capped per target: 4 functional, 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1051691 | Functional | Agonist activity at FPRL2 expressed in human HL60 cells assessed as induction of intracellular calcium flux by FLIPR3 calcium assay | 6-methyl-2,4-disubstituted pyridazin-3(2H)-ones: a novel class of small-molecule agonists for formyl peptide receptors. — J Med Chem |
| CHEMBL2393753 | Binding | Agonist activity at FPR3 (unknown origin) transfected in human HL60 cells assessed as induction of Ca2+ mobilization relative to WKYMVm | Further studies on 2-arylacetamide pyridazin-3(2H)-ones: design, synthesis and evaluation of 4,6-disubstituted analogs as formyl peptide receptors (FPRs) agonists. — Eur J Med Chem |
Cellosaurus cell lines
1 cell lines: 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_KV16 | cAMP Hunter CHO-K1 FPR3 Gi | Spontaneously immortalized cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alopecia areata