FRGCA

Summary

FRGCA (FOXM1-regulated, gastric cancer associated, HGNC:51844) is a long non-coding RNA gene on chromosome 21q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51844
Approved symbol	FRGCA
Name	FOXM1-regulated, gastric cancer associated
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	LncRNA-AP001631.9
Ensembl gene	ENSG00000236663
Ensembl biotype	lncRNA
Entrez	106481742
RNAcentral	URS000058EF33 — lncRNA, 422 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000424933, ENST00000770799, ENST00000770800, ENST00000770801, ENST00000770802

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424933 — 3 exons

Exon	Start	End
ENSE00003984205	43141275	43141635
ENSE00003984206	43140519	43140813
ENSE00003984207	43140962	43141111

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 71.89.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	71.89	gold quality
bone marrow	UBERON:0002371	67.02	gold quality
stromal cell of endometrium	CL:0002255	63.45	gold quality
lymph node	UBERON:0000029	62.25	gold quality
muscle tissue	UBERON:0002385	61.92	gold quality
blood	UBERON:0000178	61.49	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.95	gold quality
tonsil	UBERON:0002372	58.71	gold quality
monocyte	CL:0000576	57.71	gold quality
placenta	UBERON:0001987	57.60	gold quality
duodenum	UBERON:0002114	57.52	gold quality
mucosa of transverse colon	UBERON:0004991	56.87	gold quality
prefrontal cortex	UBERON:0000451	56.52	gold quality
smooth muscle tissue	UBERON:0001135	56.28	gold quality
islet of Langerhans	UBERON:0000006	56.26	gold quality
fallopian tube	UBERON:0003889	55.37	gold quality
vermiform appendix	UBERON:0001154	55.10	gold quality
endocervix	UBERON:0000458	53.93	gold quality
kidney	UBERON:0002113	53.81	gold quality
right uterine tube	UBERON:0001302	53.34	gold quality
cortex of kidney	UBERON:0001225	53.25	gold quality
Ammon’s horn	UBERON:0001954	52.46	gold quality
right lobe of thyroid gland	UBERON:0001119	52.33	gold quality
spleen	UBERON:0002106	51.98	gold quality
primary visual cortex	UBERON:0002436	51.60	gold quality
adult mammalian kidney	UBERON:0000082	51.58	gold quality
endometrium	UBERON:0001295	51.43	gold quality
lung	UBERON:0002048	51.27	gold quality
upper lobe of left lung	UBERON:0008952	51.10	gold quality
muscle of leg	UBERON:0001383	51.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.