FRMD3-AS1

Summary

FRMD3-AS1 (FRMD3 antisense RNA 1, HGNC:55790) is a long non-coding RNA gene on chromosome 9q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55790
Approved symbol	FRMD3-AS1
Name	FRMD3 antisense RNA 1
Location	9q21.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229109
Ensembl biotype	lncRNA
Entrez	102723989
RNAcentral	URS00026A23E4 — lncRNA, 1076 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000416473, ENST00000662757, ENST00000665291, ENST00000668931, ENST00000798817, ENST00000798818, ENST00000798819, ENST00000798820, ENST00000798821, ENST00000798822, ENST00000798823

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416473 — 3 exons

Exon	Start	End
ENSE00001680409	83233716	83233919
ENSE00004186797	83219281	83219377
ENSE00004186799	83234050	83235049

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 77.94.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.94	gold quality
colonic epithelium	UBERON:0000397	74.21	gold quality
right uterine tube	UBERON:0001302	67.83	gold quality
ventricular zone	UBERON:0003053	67.29	gold quality
sural nerve	UBERON:0015488	65.15	silver quality
skeletal muscle tissue	UBERON:0001134	64.43	gold quality
ganglionic eminence	UBERON:0004023	63.04	gold quality
islet of Langerhans	UBERON:0000006	62.70	gold quality
cortical plate	UBERON:0005343	62.22	gold quality
right lobe of thyroid gland	UBERON:0001119	61.19	gold quality
thyroid gland	UBERON:0002046	61.16	gold quality
left lobe of thyroid gland	UBERON:0001120	60.76	gold quality
fallopian tube	UBERON:0003889	59.04	gold quality
kidney	UBERON:0002113	57.84	gold quality
left adrenal gland	UBERON:0001234	57.73	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.68	gold quality
left adrenal gland cortex	UBERON:0035825	57.56	gold quality
adult mammalian kidney	UBERON:0000082	57.52	gold quality
adrenal gland	UBERON:0002369	57.29	gold quality
pancreas	UBERON:0001264	57.26	gold quality
duodenum	UBERON:0002114	56.21	gold quality
cortex of kidney	UBERON:0001225	55.96	gold quality
right adrenal gland	UBERON:0001233	55.95	gold quality
monocyte	CL:0000576	55.75	gold quality
endometrium	UBERON:0001295	55.53	gold quality
bone marrow	UBERON:0002371	55.45	gold quality
stromal cell of endometrium	CL:0002255	55.25	silver quality
adenohypophysis	UBERON:0002196	55.03	gold quality
calcaneal tendon	UBERON:0003701	54.99	silver quality
metanephros cortex	UBERON:0010533	54.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.