FSCN2
geneOn this page
Also known as RP30RFSN
Summary
FSCN2 (fascin actin-bundling protein 2, retinal, HGNC:3960) is a protein-coding gene on chromosome 17q25.3, encoding Fascin-2 (O14926). Acts as an actin bundling protein.
This gene encodes a member of the fascin protein family. Fascins crosslink actin into filamentous bundles within dynamic cell extensions. This family member is proposed to play a role in photoreceptor disk morphogenesis. A mutation in this gene results in one form of autosomal dominant retinitis pigmentosa and macular degeneration. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 25794 — RefSeq curated summary.
At a glance
- Gene–disease (curated): retinitis pigmentosa (Supportive, GenCC) — +1 more curated relationship
- GWAS associations: 4
- Clinical variants (ClinVar): 737 total — 3 likely-pathogenic
- Phenotypes (HPO): 34
- MANE Select transcript:
NM_012418
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3960 |
| Approved symbol | FSCN2 |
| Name | fascin actin-bundling protein 2, retinal |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RP30, RFSN |
| Ensembl gene | ENSG00000186765 |
| Ensembl biotype | protein_coding |
| OMIM | 607643 |
| Entrez | 25794 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding, 1 retained_intron
ENST00000334850, ENST00000417245, ENST00000527221
RefSeq mRNA: 2 — MANE Select: NM_012418
NM_001077182, NM_012418
CCDS: CCDS45810, CCDS45811
Canonical transcript exons
ENST00000417245 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001335471 | 81536146 | 81536267 |
| ENSE00001335476 | 81536875 | 81537130 |
| ENSE00001335478 | 81528377 | 81529357 |
| ENSE00001689007 | 81536622 | 81536789 |
| ENSE00001797139 | 81535052 | 81535208 |
Expression profiles
Bgee: expression breadth ubiquitous, 148 present calls, max score 81.91.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0285 / max 13.4744, expressed in 8 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 163341 | 0.0285 | 8 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| frontal pole | UBERON:0002795 | 81.91 | gold quality |
| paraflocculus | UBERON:0005351 | 80.12 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 78.92 | silver quality |
| endometrium epithelium | UBERON:0004811 | 75.94 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 73.74 | gold quality |
| body of pancreas | UBERON:0001150 | 73.48 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 72.40 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 71.55 | gold quality |
| thyroid gland | UBERON:0002046 | 70.54 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 70.48 | gold quality |
| stromal cell of endometrium | CL:0002255 | 70.40 | gold quality |
| buccal mucosa cell | CL:0002336 | 67.93 | gold quality |
| cerebellar vermis | UBERON:0004720 | 64.76 | gold quality |
| bone marrow cell | CL:0002092 | 64.69 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 63.84 | gold quality |
| cortical plate | UBERON:0005343 | 63.13 | gold quality |
| ascending aorta | UBERON:0001496 | 62.27 | gold quality |
| thoracic aorta | UBERON:0001515 | 62.26 | gold quality |
| pancreas | UBERON:0001264 | 61.77 | gold quality |
| parotid gland | UBERON:0001831 | 61.07 | gold quality |
| endocervix | UBERON:0000458 | 60.66 | gold quality |
| aorta | UBERON:0000947 | 60.19 | gold quality |
| right uterine tube | UBERON:0001302 | 60.13 | gold quality |
| body of uterus | UBERON:0009853 | 60.03 | gold quality |
| colonic epithelium | UBERON:0000397 | 59.84 | silver quality |
| body of stomach | UBERON:0001161 | 59.78 | gold quality |
| mucosa of stomach | UBERON:0001199 | 59.38 | gold quality |
| popliteal artery | UBERON:0002250 | 58.84 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 58.83 | gold quality |
| tibial artery | UBERON:0007610 | 58.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.35 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CRX, NRL
Literature-anchored findings (GeneRIF, showing 15)
- The 208delG mutation in the FSCN2 gene produces not only autosomal dominant retinitis pigmentosa but also ADMD (autosomal dominant macular degeneration) (PMID:14609921)
- The photoreceptor-specific FSCN2 gene showed a relatively high number of sequence variations. (PMID:16280978)
- The 208delG mutation in FSCN2 is not associated with hereditary retinal degeneration in the Chinese individuals examined. (PMID:17251446)
- Real-time PCR-based genotyping method developed here is useful for investigations of allelic asymmetries within genomic regions with variations found in retinitis pigmentosa and retinl degeneration. (PMID:18450588)
- In ovarian tumors fascin is associated with certain features of increased tumor aggressiveness. (PMID:18498068)
- Higher fascin scores correlated positively with tumor differentiation of esophageal SqCC. Significantly worse prognosis in patients with high scores of fascin, poor differentiation, T4 stage, positive for lymph node metastasis and distant metastasis (PMID:19207554)
- expression may play an essential role in regulation of progression of oral squamous cell carcinoma and contributes to the event of epithelial-mesenchymal transition in the early aggressiveness of OSCC (PMID:19473443)
- Fascin expression predicts survival after potentially curative resection of node-positive colon cancer. (PMID:20410808)
- The filopodium: a stable structure with highly regulated repetitive cycles of elongation and persistence depending on the actin cross-linker fascin (PMID:21975552)
- the serum fascin level is an effective indicator of tumor aggressiveness, and that it plays an important role in the prognosis of NSCLC, particularly for non-distant metastatic patients. (PMID:24070574)
- Data indicate the specific contribution of fascin and cortactin during invadopodium formation. (PMID:24414419)
- Tax-mediated transcriptional induction of Fascin requires NF-kappaB- and TRR-dependent promoter activation, and a promoter-independent, but PP2-sensitive signaling pathway. (PMID:26363219)
- diffuse expression in 82% of undifferentiated/dedifferentiated endometrial carcinomas (PMID:28272224)
- Fascin induces melanoma tumorigenesis and stemness through regulating the Hippo pathway (PMID:29970086)
- Fascin as a useful marker for cancer-associated fibroblasts in invasive lung adenocarcinoma. (PMID:34477172)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fscn2a | ENSDARG00000059574 |
| danio_rerio | fscn2b | ENSDARG00000074396 |
| mus_musculus | Fscn2 | ENSMUSG00000025380 |
| rattus_norvegicus | Fscn2 | ENSRNOG00000036700 |
| drosophila_melanogaster | sn | FBGN0003447 |
Paralogs (2): FSCN1 (ENSG00000075618), FSCN3 (ENSG00000106328)
Protein
Protein identifiers
Fascin-2 — O14926 (reviewed: O14926)
Alternative names: Retinal fascin
All UniProt accessions (1): O14926
UniProt curated annotations — full annotation on UniProt →
Function. Acts as an actin bundling protein. May play a pivotal role in photoreceptor cell-specific events, such as disk morphogenesis.
Subcellular location. Cytoplasm. Cytoskeleton. Cell projection. Stereocilium.
Tissue specificity. Localized specifically in the outer and inner segments of the photoreceptor cells in the retina.
Disease relevance. Retinitis pigmentosa 30 (RP30) [MIM:607921] A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the fascin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O14926-1 | 1 | yes |
| O14926-2 | 2 |
RefSeq proteins (2): NP_001070650, NP_036550* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008999 | Actin-crosslinking | Homologous_superfamily |
| IPR010431 | Fascin | Family |
| IPR022768 | Fascin-like_dom | Domain |
| IPR024703 | Fascin_metazoans | Family |
Pfam: PF06268
UniProt features (2 total): chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O14926-F1 | 93.79 | 0.88 |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
MSigDB gene sets: 148 (showing top):
GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, MYOGENIN_Q6, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GCANCTGNY_MYOD_Q6, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, GOBP_NEUROGENESIS, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_EYE_PHOTORECEPTOR_CELL_DIFFERENTIATION, GOBP_SENSORY_PERCEPTION_OF_LIGHT_STIMULUS, GOBP_ACTIN_FILAMENT_ORGANIZATION, BROWNE_HCMV_INFECTION_14HR_DN, GOBP_PHOTORECEPTOR_CELL_DEVELOPMENT, MODULE_99, MYOD_Q6, GOBP_PHOTORECEPTOR_CELL_DIFFERENTIATION
GO Biological Process (8): establishment or maintenance of cell polarity (GO:0007163), visual perception (GO:0007601), anatomical structure morphogenesis (GO:0009653), cell migration (GO:0016477), actin cytoskeleton organization (GO:0030036), eye photoreceptor cell development (GO:0042462), actin filament bundle assembly (GO:0051017), actin filament organization (GO:0007015)
GO Molecular Function (4): actin binding (GO:0003779), protein-macromolecule adaptor activity (GO:0030674), actin filament binding (GO:0051015), protein binding (GO:0005515)
GO Cellular Component (5): cytoplasm (GO:0005737), actin cytoskeleton (GO:0015629), stereocilium (GO:0032420), cytoskeleton (GO:0005856), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cellular process | 1 |
| sensory perception of light stimulus | 1 |
| developmental process | 1 |
| anatomical structure development | 1 |
| cell motility | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| eye photoreceptor cell differentiation | 1 |
| photoreceptor cell development | 1 |
| cellular component assembly | 1 |
| actin filament bundle organization | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cytoskeletal protein binding | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoskeleton | 1 |
| stereocilium bundle | 1 |
| neuron projection | 1 |
| actin-based cell projection | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
778 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FSCN2 | RP9 | Q8TA86 | 849 |
| FSCN2 | PRPF31 | Q8WWY3 | 838 |
| FSCN2 | NRL | P54845 | 812 |
| FSCN2 | PRPF3 | O43395 | 811 |
| FSCN2 | CRX | O43186 | 802 |
| FSCN2 | PRPF8 | Q6P2Q9 | 802 |
| FSCN2 | IMPDH1 | P20839 | 799 |
| FSCN2 | GUCA1B | Q9UMX6 | 786 |
| FSCN2 | ROM1 | Q03395 | 781 |
| FSCN2 | TOPORS | Q9NS56 | 780 |
| FSCN2 | CERKL | Q49MI3 | 779 |
| FSCN2 | RDH12 | Q96NR8 | 764 |
| FSCN2 | PCARE | A6NGG8 | 760 |
| FSCN2 | ZNF513 | Q8N8E2 | 751 |
| FSCN2 | PDE6A | P16499 | 750 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRKCA | FSCN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FSCN2 | YWHAG | psi-mi:“MI:0915”(physical association) | 0.560 |
| FSCN2 | SETDB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KAT5 | FSCN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LMO3 | FSCN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FSCN2 | QRICH1 | psi-mi:“MI:0914”(association) | 0.530 |
| APBB1 | SSPOP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (8): QRICH1 (Affinity Capture-MS), ZNF507 (Affinity Capture-MS), SPECC1L (Affinity Capture-MS), FSCN2 (Affinity Capture-RNA), TBC1D22B (Affinity Capture-MS), QRICH1 (Affinity Capture-MS), ZNF507 (Affinity Capture-MS), FSCN2 (Affinity Capture-MS)
ESM2 similar proteins: B0LPN4, E9PZQ0, E9Q401, F1LMY4, O14926, O18728, O95834, P10767, P11403, P11716, P16960, P21658, P21817, P30957, P47823, P55075, P85845, Q13144, Q16658, Q24498, Q24524, Q32M02, Q3U7R1, Q4R4H3, Q5CZL1, Q5E9M9, Q5XGM5, Q61553, Q64350, Q6P6T4, Q6P9Z4, Q6PFQ7, Q6SZW1, Q7TNG5, Q7TSA0, Q7Z6L1, Q8CHW4, Q8IXI1, Q8JZN7, Q8K2J0
Diamond homologs: O14926, O18728, P85845, Q16658, Q24524, Q32M02, Q61553, Q91837, Q05634
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
737 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 3 |
| Uncertain significance | 445 |
| Likely benign | 225 |
| Benign | 22 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3028481 | NM_012418.4(FSCN2):c.22C>T (p.Gln8Ter) | Likely pathogenic |
| 3028487 | NM_001077182.3(FSCN2):c.827-1delG | Likely pathogenic |
| 3028497 | NM_012418.4(FSCN2):c.1415G>C (p.Gly472Ala) | Likely pathogenic |
SpliceAI
671 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:81535047:TCCAG:T | acceptor_loss | 1.0000 |
| 17:81535050:A:T | acceptor_loss | 1.0000 |
| 17:81535051:G:GA | acceptor_loss | 1.0000 |
| 17:81535205:AAGT:A | donor_gain | 1.0000 |
| 17:81535207:GT:G | donor_gain | 1.0000 |
| 17:81535209:G:GG | donor_gain | 1.0000 |
| 17:81536144:A:AG | acceptor_gain | 1.0000 |
| 17:81536145:G:GC | acceptor_gain | 1.0000 |
| 17:81536145:GT:G | acceptor_gain | 1.0000 |
| 17:81536145:GTT:G | acceptor_gain | 1.0000 |
| 17:81536145:GTTCT:G | acceptor_gain | 1.0000 |
| 17:81536620:A:AG | acceptor_gain | 1.0000 |
| 17:81536621:G:GG | acceptor_gain | 1.0000 |
| 17:81529298:A:T | donor_gain | 0.9900 |
| 17:81529338:C:G | donor_gain | 0.9900 |
| 17:81529357:GGTAG:G | donor_loss | 0.9900 |
| 17:81529358:G:GC | donor_loss | 0.9900 |
| 17:81529359:T:A | donor_loss | 0.9900 |
| 17:81535050:A:AG | acceptor_gain | 0.9900 |
| 17:81535050:AG:A | acceptor_gain | 0.9900 |
| 17:81535050:AGG:A | acceptor_gain | 0.9900 |
| 17:81535051:G:GG | acceptor_gain | 0.9900 |
| 17:81535051:GG:G | acceptor_gain | 0.9900 |
| 17:81535051:GGG:G | acceptor_gain | 0.9900 |
| 17:81535051:GGGGT:G | acceptor_gain | 0.9900 |
| 17:81535128:G:GT | donor_gain | 0.9900 |
| 17:81535204:CAAGT:C | donor_gain | 0.9900 |
| 17:81535207:GTGTG:G | donor_loss | 0.9900 |
| 17:81535208:TG:T | donor_loss | 0.9900 |
| 17:81535210:T:TC | donor_loss | 0.9900 |
AlphaMissense
3199 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:81528922:T:A | W131R | 0.993 |
| 17:81528922:T:C | W131R | 0.993 |
| 17:81529193:T:C | F221S | 0.992 |
| 17:81528667:T:A | W46R | 0.991 |
| 17:81528667:T:C | W46R | 0.991 |
| 17:81528800:T:C | F90S | 0.990 |
| 17:81535162:T:A | W313R | 0.988 |
| 17:81535162:T:C | W313R | 0.988 |
| 17:81528829:T:A | W100R | 0.985 |
| 17:81528829:T:C | W100R | 0.985 |
| 17:81528964:A:C | S145R | 0.984 |
| 17:81528966:C:A | S145R | 0.984 |
| 17:81528966:C:G | S145R | 0.984 |
| 17:81537069:T:A | W490R | 0.984 |
| 17:81537069:T:C | W490R | 0.984 |
| 17:81528616:T:C | F29L | 0.982 |
| 17:81528618:C:A | F29L | 0.982 |
| 17:81528618:C:G | F29L | 0.982 |
| 17:81528924:G:C | W131C | 0.981 |
| 17:81528924:G:T | W131C | 0.981 |
| 17:81536690:T:C | F392L | 0.981 |
| 17:81536692:C:A | F392L | 0.981 |
| 17:81536692:C:G | F392L | 0.981 |
| 17:81528598:T:G | Y23D | 0.980 |
| 17:81536656:C:A | N380K | 0.980 |
| 17:81536656:C:G | N380K | 0.980 |
| 17:81528669:G:C | W46C | 0.979 |
| 17:81528669:G:T | W46C | 0.979 |
| 17:81535099:T:C | F292L | 0.979 |
| 17:81535101:C:A | F292L | 0.979 |
dbSNP variants (sampled 300 via entrez): RS1000078527 (17:81524473 G>A), RS1000209550 (17:81533086 C>T), RS1000308986 (17:81524789 G>A), RS1000391041 (17:81535601 C>T), RS1000501599 (17:81532138 T>C,G), RS1000564279 (17:81533313 A>G), RS1000681913 (17:81532106 A>G,T), RS1000720224 (17:81537160 G>A,C,T), RS1000772855 (17:81537516 C>G,T), RS1000772945 (17:81537049 C>A,T), RS1001097279 (17:81515429 A>G,T), RS1001198545 (17:81520044 G>A), RS1001211038 (17:81515642 T>A), RS1001263348 (17:81515476 T>A,C), RS1001347896 (17:81525281 C>T)
Disease associations
OMIM: gene MIM:607643 | disease phenotypes: MIM:607921, MIM:156000, MIM:204000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| retinitis pigmentosa | Supportive | Autosomal dominant |
| retinitis pigmentosa 30 | Limited | Autosomal dominant |
Mondo (6): retinitis pigmentosa 30 (MONDO:0011935), inherited retinal dystrophy (MONDO:0019118), Meniere disease (MONDO:0007972), macular degeneration (MONDO:0003004), Leber congenital amaurosis (MONDO:0018998), retinitis pigmentosa (MONDO:0019200)
Orphanet (4): Retinitis pigmentosa (Orphanet:791), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Leber congenital amaurosis (Orphanet:65), NON RARE IN EUROPE: Menière disease (Orphanet:45360)
HPO phenotypes
34 total (30 of 34 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000533 | Chorioretinal atrophy |
| HP:0000543 | Optic disc pallor |
| HP:0000546 | Retinal degeneration |
| HP:0000551 | Color vision defect |
| HP:0000563 | Keratoconus |
| HP:0000602 | Ophthalmoplegia |
| HP:0000613 | Photophobia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000662 | Nyctalopia |
| HP:0000842 | Hyperinsulinemia |
| HP:0001105 | Retinal atrophy |
| HP:0007663 | Reduced visual acuity |
| HP:0007675 | Progressive night blindness |
| HP:0007703 | Abnormal retinal pigmentation |
| HP:0007737 | Spicular pigmentation of the retina |
| HP:0007787 | Posterior subcapsular cataract |
| HP:0007843 | Attenuation of retinal blood vessels |
| HP:0007994 | Peripheral visual field loss |
| HP:0008046 | Abnormal retinal vascular morphology |
| HP:0011505 | Cystoid macular edema |
| HP:0012426 | Optic disc drusen |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010002_133 | Refractive error | 2.000000e-50 |
| GCST011349_27 | Gamma glutamyl transferase levels | 2.000000e-10 |
| GCST012442_6 | Age-related hearing impairment | 7.000000e-10 |
| GCST90011898_59 | Alanine aminotransferase levels | 7.000000e-25 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D057130 | Leber Congenital Amaurosis | C11.270.516; C11.768.364 |
| D008268 | Macular Degeneration | C11.768.585.439 |
| D008575 | Meniere Disease | C09.218.568.217.500 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tetrachlorodibenzodioxin | affects expression, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Catechin | affects cotreatment, increases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Bucladesine | affects cotreatment, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Oxygen | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Medroxyprogesterone Acetate | affects cotreatment, increases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Clinical trials (associated diseases)
515 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT01574313 | PHASE4 | COMPLETED | Effect of Stellate Ganglion Block on Meniere’s Disease |
| NCT02529475 | PHASE4 | TERMINATED | Evaluation of Inner Ear and Brain Structures With Contrast-enhanced MRI in Healthy Subjects (HYDROPS) |
| NCT04815187 | PHASE4 | ACTIVE_NOT_RECRUITING | Repurposed Use of Allergic Rhinitis and Allergic Asthma Drug to Reduce Vertigo and Hearing Loss in Meniere’s Disease |
| NCT00312351 | PHASE4 | TERMINATED | A Clinical Trial to Explore the Safety and Efficacy of Three Different Doses of Pegaptanib Sodium in Patients With Wet Age-Related Macular Degeneration (AMD) |
| NCT00324116 | PHASE4 | COMPLETED | Evaluation Of Safety And Efficacy Of 0.3 Mg/Eye Macugen In Patients With Small Age-Related Macular Degeneration Lesions |
| NCT00327470 | PHASE4 | TERMINATED | An Open Label Trial to Investigate Macugen for the Preservation of Visual Function in Subjects With Neovascular AMD |
| NCT00533520 | PHASE4 | COMPLETED | Evaluation of Dosing Interval of Higher Doses of Ranibizumab |
| NCT00813891 | PHASE4 | UNKNOWN | Efficacy of Ranibizumab in Combination With Photodynamic Therapy for Wet Age-Related Macular Degeneration |
| NCT01006538 | PHASE4 | COMPLETED | Macular EpiRetinal Brachytherapy Versus Lucentis® Only Treatment (MERLOT) |
| NCT01213667 | PHASE4 | UNKNOWN | Genetics in Non-response to Anti-VEGF Treatment in Exudative AMD |
| NCT01831947 | PHASE4 | COMPLETED | Efficacy Study of Ranibizumab on Patients With Age-related Macular Degeneration. |
| NCT02581891 | PHASE4 | COMPLETED | Managing Neovascular (Known as Wet) Age-related Macular Degeneration Over 2 Years Using Different Treatment Schedules of 2 mg Intravitreal Aflibercept Injected in the Eye |
| NCT02689518 | PHASE4 | COMPLETED | EAGLE: Evaluating Genotypes Using Intravitreal Aflibercept Injection |
| NCT03804099 | PHASE4 | COMPLETED | Effect Aflibercept on Ocular Perfusion |
| NCT07367282 | PHASE4 | NOT_YET_RECRUITING | Evaluate the Efficacy of Faricimab in Patients With Neovascular Age-related Macular Degeneration |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT03664674 | PHASE3 | COMPLETED | Phase 3 Study of OTO-104 in Subjects With Unilateral Meniere’s Disease |
| NCT04677972 | PHASE3 | COMPLETED | SPI-1005 for the Treatment of Meniere’s Disease |
| NCT05851508 | PHASE3 | RECRUITING | The Effecttiveness of Intratympanic Methylprednisolon Injections Compared to Placebo in the Treatment of Vertigo Attacks in Meniere’s Disease |
| NCT00000145 | PHASE3 | COMPLETED | Age-Related Eye Disease Study (AREDS) |
| NCT00000150 | PHASE3 | COMPLETED | Submacular Surgery Trials (SST) |
| NCT00000152 | PHASE3 | UNKNOWN | Randomized Trial of Beta-Carotene and Macular Degeneration |
| NCT00000158 | PHASE3 | UNKNOWN | Macular Photocoagulation Study (MPS) |
| NCT00000161 | PHASE3 | UNKNOWN | Randomized Trials of Vitamin Supplements and Eye Disease |
| NCT00000162 | PHASE3 | COMPLETED | Branch Vein Occlusion Study |
| NCT00000167 | PHASE3 | COMPLETED | Complications of Age-Related Macular Degeneration Prevention Trial |
| NCT00041483 | PHASE3 | COMPLETED | Phase 3 Study to Evaluate Anecortave Acetate vs. Visudyne for the Treatment of the Wet Form of AMD |
| NCT00042211 | PHASE3 | COMPLETED | Preventing Depression in Patients With Macular Degeneration |
Related Atlas pages
- Associated diseases: retinitis pigmentosa 30, retinitis pigmentosa 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Leber congenital amaurosis, macular degeneration, Meniere disease, presbycusis, retinitis pigmentosa, retinitis pigmentosa 30