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FUS

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Also known as TLSFUS1hnRNP-P2HNRNPP2

Summary

FUS (FUS RNA binding protein, HGNC:4010) is a protein-coding gene on chromosome 16p11.2, encoding RNA-binding protein FUS (P35637). DNA/RNA-binding protein that plays a role in various cellular processes such as transcription regulation, RNA splicing, RNA transport, DNA repair and damage response.

This gene encodes a multifunctional protein component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complex. The hnRNP complex is involved in pre-mRNA splicing and the export of fully processed mRNA to the cytoplasm. This protein belongs to the FET family of RNA-binding proteins which have been implicated in cellular processes that include regulation of gene expression, maintenance of genomic integrity and mRNA/microRNA processing. Alternative splicing results in multiple transcript variants. Defects in this gene result in amyotrophic lateral sclerosis type 6.

Source: NCBI Gene 2521 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): amyotrophic lateral sclerosis type 6 (Definitive, ClinGen) — +3 more curated relationships
  • GWAS associations: 3
  • Clinical variants (ClinVar): 704 total — 31 pathogenic, 17 likely-pathogenic (top 5% of genes corpus-wide)
  • Regional missense constraint (gnomAD): 2 of 6 regions constrained (≈18% of expected missense variation)
  • GTEx eGene: eQTL in 7 tissues, sQTL in 2 (q < 0.05)
  • Phenotypes (HPO): 118
  • Cancer driver (intOGen): ambiguous (mixed evidence) across 1 cancer types (inferred from mutation patterns)
  • Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.10 (highly constrained)
  • MANE Select transcript: NM_004960
  • Interaction hub: 3,838 STRING partners (top 1% of genes corpus-wide)

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:4010
Approved symbolFUS
NameFUS RNA binding protein
Location16p11.2
Locus typegene with protein product
StatusApproved
AliasesTLS, FUS1, hnRNP-P2, HNRNPP2
Ensembl geneENSG00000089280
Ensembl biotypeprotein_coding
OMIM137070
Entrez2521

Gene structure

Transcript identifiers

Ensembl transcripts: 60 — 41 protein_coding, 10 nonsense_mediated_decay, 8 retained_intron, 1 protein_coding_CDS_not_defined

MANE Select: ENST00000254108

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 3, TSL 2: 8, TSL 3: 1, TSL 5: 1

ENST00000254108, ENST00000380244, ENST00000474990, ENST00000483853, ENST00000487045, ENST00000487509, ENST00000487974, ENST00000564766, ENST00000566605, ENST00000568685, ENST00000568901, ENST00000569760, ENST00000570090, ENST00000715541, ENST00000715542, ENST00000875021, ENST00000875022, ENST00000875023, ENST00000875024, ENST00000875025, ENST00000875026, ENST00000875027, ENST00000875028, ENST00000875029, ENST00000875030, ENST00000875031, ENST00000875032, ENST00000875033, ENST00000925795, ENST00000925796, ENST00000925797, ENST00000925798, ENST00000925799, ENST00000925800, ENST00000925801, ENST00000925802, ENST00000925803, ENST00000925805, ENST00000925806, ENST00000925807, ENST00000925808, ENST00000948616, ENST00000948617, ENST00000948618, ENST00000948619, ENST00000948620, ENST00000948621, ENST00000982089, ENST00001034632, ENST00001034634, ENST00001087674, ENST00001087676, ENST00001087677, ENST00001087680, ENST00001094132, ENST00001094133, ENST00001107790, ENST00001129828, ENST00001129829, ENST00001140773

RefSeq mRNA: 3 — MANE Select: NM_004960 NM_001170634, NM_001170937, NM_004960

CCDS: CCDS10707, CCDS58454

Canonical transcript exons

ENST00000254108 — 15 exons

ExonStartEnd
ENSE000017918123118493931185179
ENSE000034750653118239831182422
ENSE000034942953119074231190842
ENSE000035244363118912331189226
ENSE000035344843118966531189794
ENSE000035376173118420931184396
ENSE000035995473118385831184002
ENSE000036046253119027531190398
ENSE000036306773118251331182664
ENSE000036375723119096331191110
ENSE000036539713119004031190141
ENSE000039034813118013931180227
ENSE000040270463118832531188357
ENSE000040270473119139931191605
ENSE000040270523118680231186836

Expression profiles

Bgee: expression breadth ubiquitous, 304 present calls, max score 99.63.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 264.7030 / max 2181.2839, expressed in 1827 samples.

Highest expression (Bgee): testis, ventricular zone, hemisphere of cerebellum, cerebellar hemisphere, ganglionic eminence.

Genetic regulation across tissues (GTEx eQTL / sQTL)

FUS is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 7 tissues and its splicing (sQTL) in 2 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

9 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Nerve Tibialeqtl1.1e-03-0.1216:31248691:C:A
Cells EBV-transformed lymphocyteseqtl1.4e-03+0.7816:31005687:G:T
Brain Cerebellumeqtl4.2e-03+0.8616:31460537:A:C
Skin Sun Exposed Lower legeqtl1.4e-02+0.3316:31941041:T:C
Skin Sun Exposed Lower legsqtl1.7e-02-0.1716:31244463:C:G
Pituitaryeqtl3.0e-02+0.2016:31966429:G:A
Cells Cultured fibroblastseqtl3.3e-02-0.2716:30581429:C:T
Vaginaeqtl3.7e-02-2.4016:31895514:C:T
Cells Cultured fibroblastssqtl4.5e-02-0.6016:30877645:T:C

FANTOM5 promoters

3 alternative TSS:

Promoter IDTPM avgSamples expressed
153775261.62941827
1537851.98661044
1537791.0870640

Top tissues by expression

showing 100 of 304 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right testisUBERON:000453499.63gold quality
ventricular zoneUBERON:000305399.62gold quality
right hemisphere of cerebellumUBERON:001489099.61gold quality
cerebellar hemisphereUBERON:000224599.60gold quality
left testisUBERON:000453399.60gold quality
ganglionic eminenceUBERON:000402399.57gold quality
right uterine tubeUBERON:000130299.49gold quality
embryoUBERON:000092299.47gold quality
right ovaryUBERON:000211899.45gold quality
left ovaryUBERON:000211999.45gold quality
cerebellar cortexUBERON:000212999.45gold quality
right lobe of thyroid glandUBERON:000111999.42gold quality
cortical plateUBERON:000534399.41gold quality
adenohypophysisUBERON:000219699.36gold quality
body of uterusUBERON:000985399.36gold quality
metanephros cortexUBERON:001053399.34gold quality
left lobe of thyroid glandUBERON:000112099.33gold quality
left uterine tubeUBERON:000130399.32gold quality
endocervixUBERON:000045899.31gold quality
granulocyteCL:000009499.30gold quality
nerveUBERON:000102199.30gold quality
tibial nerveUBERON:000132399.30gold quality
tendon of biceps brachiiUBERON:000818899.30gold quality
cerebellumUBERON:000203799.29gold quality
small intestine Peyer’s patchUBERON:000345499.23gold quality
mucosa of stomachUBERON:000119999.20gold quality
thyroid glandUBERON:000204699.17gold quality
ectocervixUBERON:001224999.17gold quality
skin of abdomenUBERON:000141699.14gold quality
endometrium epitheliumUBERON:000481199.11gold quality
spleenUBERON:000210699.10gold quality
upper lobe of left lungUBERON:000895299.09gold quality
colonic epitheliumUBERON:000039799.04gold quality
skin of legUBERON:000151199.04gold quality
right frontal lobeUBERON:000281099.04gold quality
muscle layer of sigmoid colonUBERON:003580599.04gold quality
minor salivary glandUBERON:000183099.03gold quality
peritoneumUBERON:000235899.03gold quality
omental fat padUBERON:001041499.03gold quality
esophagogastric junction muscularis propriaUBERON:003584199.02gold quality
mucosa of transverse colonUBERON:000499199.00gold quality
body of pancreasUBERON:000115098.99gold quality
transverse colonUBERON:000115798.99gold quality
body of stomachUBERON:000116198.97gold quality
C1 segment of cervical spinal cordUBERON:000646998.95gold quality
pituitary glandUBERON:000000798.94gold quality
lymph nodeUBERON:000002998.94gold quality
right lungUBERON:000216798.94gold quality
right adrenal gland cortexUBERON:003582798.89gold quality
lower esophagus muscularis layerUBERON:003583398.89gold quality
ovaryUBERON:000099298.88gold quality
lower esophagusUBERON:001347398.88gold quality
monocyteCL:000057698.86gold quality
right adrenal glandUBERON:000123398.81gold quality
right coronary arteryUBERON:000162598.80gold quality
left adrenal gland cortexUBERON:003582598.79gold quality
nucleus accumbensUBERON:000188298.78gold quality
upper lobe of lungUBERON:000894898.78gold quality
left adrenal glandUBERON:000123498.77gold quality
lower esophagus mucosaUBERON:003583498.75gold quality
olfactory segment of nasal mucosaUBERON:000538698.74gold quality
thoracic aortaUBERON:000151598.73gold quality
ascending aortaUBERON:000149698.72gold quality
apex of heartUBERON:000209898.72gold quality
descending thoracic aortaUBERON:000234598.72gold quality
leukocyteCL:000073898.71gold quality
mononuclear cellCL:000084298.71gold quality
left coronary arteryUBERON:000162698.71gold quality
vaginaUBERON:000099698.69gold quality
esophagusUBERON:000104398.69gold quality
stromal cell of endometriumCL:000225598.68gold quality
paraflocculusUBERON:000535198.68gold quality
amygdalaUBERON:000187698.66gold quality
smooth muscle tissueUBERON:000113598.65gold quality
putamenUBERON:000187498.64gold quality
Brodmann (1909) area 9UBERON:001354098.63gold quality
coronary arteryUBERON:000162198.61gold quality
right atrium auricular regionUBERON:000663198.61gold quality
aortaUBERON:000094798.60gold quality
vermiform appendixUBERON:000115498.60gold quality
adrenal cortexUBERON:000123598.59gold quality
small intestineUBERON:000210898.58gold quality
esophagus mucosaUBERON:000246998.57gold quality
prefrontal cortexUBERON:000045198.55gold quality
tibial arteryUBERON:000761098.54gold quality
popliteal arteryUBERON:000225098.53gold quality
rectumUBERON:000105298.51gold quality
fundus of stomachUBERON:000116098.51gold quality
gall bladderUBERON:000211098.48gold quality
caudate nucleusUBERON:000187398.46gold quality
saliva-secreting glandUBERON:000104498.45gold quality
caecumUBERON:000115398.42gold quality
mouth mucosaUBERON:000372998.42gold quality
adipose tissue of abdominal regionUBERON:000780898.42gold quality
sigmoid colonUBERON:000115998.41gold quality
olfactory bulbUBERON:000226498.38gold quality
cingulate cortexUBERON:000302798.37gold quality
stomachUBERON:000094598.35gold quality
anterior cingulate cortexUBERON:000983598.32gold quality
zone of skinUBERON:000001498.29gold quality

Single-cell (SCXA)

Detected in 9 experiment(s), a significant marker in 5.

ExperimentMarker?Max mean expression
E-GEOD-76312yes467.03
E-CURD-122yes35.57
E-GEOD-134144yes29.62
E-MTAB-10042yes4.39
E-MTAB-6819no274.48
E-HCAD-4no37.84
E-GEOD-93593no6.61
E-GEOD-125970no3.56
E-ANND-3no0.00

HPA expression

RNA tissue specificity: Low tissue specificity

showing 60 of 80 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Caudate putamentissue203.2
Thymustissue162.4
Frontal cortextissue161.9
Ovarytissue148.1high
Tonsiltissue106.1high
Appendixtissue97.2high
Bone marrowtissue93.4high
Fallopian tubetissue93.3high
Skeletal muscletissue92.4high
Smooth muscletissue91.7high
Lymph nodetissue91.5high
Endometrium 1tissue90.4high
Corpus callosumtissue86.9
Adipose tissuetissue83.0high
Spinal cordtissue83.0
Urinary bladdertissue81.6high
Tonguetissue80.3
Thalamustissue80.1
Parathyroid glandtissue79.9high
Midbraintissue79.1
Medulla oblongatatissue77.4
Nucleus accumbenstissue77.2
Periaqueductal graytissue75.6
Hypothalamustissue75.1
Ponstissue74.5
Putamentissue72.8
Superior colliculitissue72.1
Hippocampal formationtissue71.7
Substantia nigratissue71.0
Cerebellumtissue69.7high
Ventral forebraintissue69.6
Hippocampustissue68.6high
Colontissue67.9high
Seminal vesicletissue66.4high
Olfactory bulbtissue66.1
Heart muscletissue66.0high
Vaginatissue65.9high
Basal gangliatissue65.9high
Septumtissue65.9
Spleentissue65.4high
Cerebral cortextissue65.2high
Somatosensory cortextissue65.2
Postcentral gyrustissue65.1
Cervixtissue63.4high
Amygdalatissue62.7
Prefrontal cortextissue62.5
Motor cortextissue62.1
Locus coeruleustissue61.5
Lungtissue61.1high
Breasttissue61.0high
Temporal cortextissue60.1
Entorhinal cortextissue59.4
Occipital cortextissue59.3
Rectumtissue59.0high
Retrosplenial cortextissue58.4
Retrosplenial and cingulate cortextissue57.6
Kidneytissue57.1high
Salivary glandtissue56.6high
Duodenumtissue56.1high
Stomach 1tissue56.0high

Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — Orbitofrontal gyrus, anterior (92.6), White matter (86.9), Area parastriata, superior (83.0), Dorsal spinal cord (83.0), Cerebellar nuclei (82.2).

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

4 targets:

TargetRegulation
ARUnknown
DDIT3Activation
KLK3Unknown
MDM2Repression

Upstream regulators (CollecTRI, top): AR, DDIT3, GTF3A, NFKB, SP1, TBP, TP53

miRNA regulators (miRDB)

Targeting FUS by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 127 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-3134100.0066.43777
HSA-MIR-4533100.0069.482758
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-428299.9975.366408
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-MIR-480399.9871.993117
HSA-MIR-3692-3P99.9870.272139
HSA-MIR-548N99.9871.944170
HSA-MIR-1213699.9872.815713
HSA-MIR-381-3P99.9371.872854
HSA-MIR-30099.9271.762856
HSA-MIR-498-3P99.9171.271114
HSA-MIR-449399.9066.48977
HSA-MIR-153-5P99.8973.866317
HSA-MIR-7162-3P99.8968.161682
HSA-MIR-6780A-5P99.8866.692776
HSA-LET-7A-2-3P99.8770.531921
HSA-MIR-4728-5P99.8569.394718
HSA-LET-7G-3P99.8570.431929
HSA-MIR-383-3P99.8565.841359
HSA-MIR-202-3P99.8471.411290
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-1273H-5P99.7766.322471
HSA-MIR-320A-3P99.7769.732107
HSA-MIR-320B99.7769.732107
HSA-MIR-320C99.7769.732107
HSA-MIR-320D99.7769.732107

Functional genomics

gnomAD constraint: pLI 1, LOEUF 0.104, missense Z 2.83 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD)

ENST00000254108 splits into 6 regions with different missense tolerance; 2 are missense-constrained (≈18% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD

Region (GRCh38)Missense obs / expo/eConstrained
16:31,180,215–31,185,121276 / 303.30.91no
16:31,185,122–31,189,14451 / 72.20.71no
16:31,189,145–31,190,09426 / 109.30.24yes (p 1.6e-15)
16:31,190,095–31,190,74263 / 83.00.76no
16:31,190,743–31,190,7900 / 19.20.00yes (p 1.2e-05)
16:31,190,791–31,191,43596 / 120.70.80no

Literature-anchored findings (GeneRIF, showing 40)

  • Temperature-dependent localization of TLS-CHOP to splicing factor compartments and association with Cajal bodies. A region within the N-terminal sequence required for colocalization with the splicing factor SC-35 is identified. (PMID:12169268)
  • Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteins and plays a role in spliceosome assembly (PMID:12581738)
  • FUS was fused with BBF2H7 in a low grade myxoid liposarcoma. (PMID:12915480)
  • data suggest that different FUS/CHOP variants cause transformation of mesenchymal cells via the same pathways with comparable efficacy (PMID:15286712)
  • the zinc finger domain plays a more predominant role in RNA recognition than the RRM domain in TLS (PMID:15299008)
  • Effect of FUS-DDIT3 fusion on IL6 expression is C/EBP beta dependent in myxoid lipoxarcoma. (PMID:15688424)
  • The oncogenic TLS-ERG fusion protein activates two different sets of genes sharing little similarity when transforms hematopoietic cells and fibroblasts. (PMID:15988032)
  • Patients with immunophenotype of Pre-B-acute lymphoblastic leukemia were found to carry: TLS/ERG. (PMID:16215946)
  • Interaction of beta-catenin with FUS/TLS and other RNA-binding proteins involved in the regulation of pre-mRNA splicing in colorectal cancer (PMID:16230076)
  • Development of lipoblasts and the typical MLS/RCLS capillary network could be an effect of the DDIT3 transcription factor partner of the fusion oncogene. (PMID:16651630)
  • FUS-DDIT3 is a chimeric oncogene generated by the most common chromosomal translocation t(12;16)(q13;p11) associated to liposarcomas. (PMID:17468515)
  • Presence of FUS/CREB3L2 and FUS/CREB3L1 in low-grade fibromyxoid sarcoma and sclerosing epithelioid fibrosarcoma suggests these neoplasms may be related. (PMID:17721195)
  • the sequestration of TLS to polyQ aggregates may play a role in diverse pathological changes in the brains of patients with polyQ diseases. (PMID:18167354)
  • TLS serves as a key transcriptional regulatory sensor of DNA damage signals that, on the basis of its allosteric modulation by RNA, specifically binds to and inhibits CBP and p300 HAT activities on a repressed gene target, cyclin D1 (PMID:18509338)
  • FUS, EWS and TAF15 proto-oncoproteins were targeted to stress granules induced by heat shock and oxidative stress (PMID:18620564)
  • IGF1 is a common target gene of Ewing’s sarcoma fusion proteins EWS-FLI-1, EWS-ERG and FUS-ERG in mesenchymal progenitor cells (PMID:18648544)
  • The FUS-DDIT3 protein induces increased expression of the CAAT/enhancer-binding protein (C/EBP) and nuclear factor-kappaB (NF-kappaB)-controlled gene IL8, and the N-terminal FUS part is required for this activation. (PMID:18850010)
  • All cases of pleomorphic liposarcoma (PLS) showed a varied distribution of extra signals with polyploidy and amplification in each histological area. No CHOP fusion transcript was found in any case of PLS by nested RT-PCR. (PMID:19037998)
  • study reports 13 mutations in FUS/TLS gene on chromosome 16 that were specific for familial amyotrophic lateral sclerosis; mutant forms of FUS/TLS accumulated in the cytoplasm of neurons (PMID:19251627)
  • identification of missense mutations in FUS in familial amyotrophic lateral sclerosis type 6; expression studies revealed aberrant localization of mutant FUS protein (PMID:19251628)
  • TDP-43 and FUS/TLS have striking structural and functional similarities, implicating alterations in RNA processing as a key event in amyotrophic lateral sclerosis pathogenesis. (PMID:19303844)
  • study presents genetic analysis data on FUS/TLS in a cohort of 52 index cases from 7 Italian regions with non-SOD1 & non-TARDBP familial amyotrophic lateral sclerosis to further define spectrum & frequency of FUS/TLS mutations (PMID:19450904)
  • The results of this study suggested that FUS may play an important role in the pathogenesis of neuronal intermediate filament inclusion disease. (PMID:19669651)
  • Results suggest that FUS is the pathological protein in a significant subgroup of sporadic frontotemporal dementia and reinforce the concept that FTD and amyotrophic lateral sclerosis are closely related conditions. (PMID:19674978)
  • TLS regulates both RNAPs II and III and supports the possibility that cross-regulation between RNA polymerases is important in maintaining normal cell growth. (PMID:19841068)
  • FUS missense mutations are present in 0.7% of Italian SALS cases. (PMID:19861302)
  • Mutations in FUS are a significant cause of familial amyotrophic lateral sclerosis in Belgium. (PMID:19922450)
  • FUS gene mutations are involved in ALS. (PMID:19965854)
  • The FUS mutation in this Japanese family caused familial amyotrophic lateral sclerosis with pathological features of multiple system degeneration and neuronal basophilic inclusions (PMID:19967541)
  • FUS-DDIT3 and the normal DDIT3 bind CDK2. (PMID:20017906)
  • This study indicated that mutations in FUS/TLS are not a major cause of sporadic ALS in the German population. (PMID:20018407)
  • FUS/TLS protein genetic variability in sporadic frontetemporal lobar degeneration. (PMID:20061612)
  • In a first analysis of FUS in patients with frontotemporal lobar degeneration (FTLD), we identified a novel FUS missense mutation, M254V, in 1 patient with pure FTLD (PMID:20124201)
  • The data of this study suggested that understanding how mutations disrupt the RNA binding domain encoded by exon 15 may be key to unraveling the role of FUS in motor neuron degeneration. (PMID:20138404)
  • This study discovered FUS mutations in Dutch patients with familial amyotrophic lateral sclerosis and the occurrence of benign variation in the gene. (PMID:20142531)
  • Data identified 4 mutations (S513P, K510E, R514S, H517P) in exon 14 and 15 of FUS in screened 40 FALS families. (PMID:20224596)
  • Findings extend the mutation spectrum in FUS leading to sporadic amyotrophic lateral sclerosis and describe the first de novo mutation in FUS. (PMID:20232451)
  • Caudate atrophy seen in magnetic resonance imaging is a feature that can distinguish frontotemporal lobar degeneration-fused in sarcoma protein (FTLD-FUS) from FTLD-TAR DNA-binding protein-43 (TDP) protein, and FTLD-TAU protein. (PMID:20236174)
  • FUS/TLS mutations represented approximately 5% of FALS cases screened. A FUS/TLS mutation was also identified in a single SALS case. (PMID:20385912)
  • We present 2 cases of SEF with cytogenetic analysis for FUS rearrangement (PMID:20499220)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_reriofusENSDARG00000037968
mus_musculusFusENSMUSG00000030795
rattus_norvegicusFusENSRNOG00000023360
rattus_norvegicusFusl1ENSRNOG00000077981
drosophila_melanogastercazFBGN0285954
caenorhabditis_elegansWBGENE00016173

Paralogs (2): EWSR1 (ENSG00000182944), TAF15 (ENSG00000270647)

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:1353633) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 21 distinct phenotype terms.

Mouse phenotype (MP)Records
neonatal lethality, complete penetrance2
small thymus1
motor neuron degeneration1
decreased motor neuron number1
abnormal neuromuscular synapse morphology1
abnormal gait1
abnormal suckling behavior1
impaired limb coordination1
abnormal embryo size1
premature death1
lymphoid hypoplasia1
abnormal immunoglobulin level1
abnormal chromosome morphology1
aneuploidy1
chromosome breakage1
decreased lymphocyte cell number1
decreased B cell number1
increased prepulse inhibition1
abnormal hippocampus pyramidal cell morphology1
increased respiratory quotient1
preweaning lethality, complete penetrance1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Bos taurusQ3ZCE8100.0%Diamond
Xenopus tropicalisQ28BZ198.9%Diamond
Salmo salarB5DGI792.6%Diamond
Arabidopsis thalianaQ94KD073.1%Diamond
Gallus gallusP1577168.5%Diamond
Schizosaccharomyces pombe 972h-O4312039.3%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
PYDC1protein-coding260434
PYCARDprotein-coding29108
ITGAMprotein-coding3684
TRIM72protein-coding493829
PYCARD-AS1ncRNA100652740
PRSS36protein-coding146547
PRSS8protein-coding5652
KAT8protein-coding84148
ITGAXprotein-coding3687

Protein

Protein identifiers

RNA-binding protein FUS — P35637 (reviewed: P35637)

Alternative names: 75 kDa DNA-pairing protein, Oncogene FUS, Oncogene TLS, POMp75, Translocated in liposarcoma protein

All UniProt accessions (6): A0AAQ5BIG2, A0AAQ5BIK3, P35637, H3BNZ4, H3BPE7, Q6IBQ5

UniProt curated annotations — full annotation on UniProt →

Function. DNA/RNA-binding protein that plays a role in various cellular processes such as transcription regulation, RNA splicing, RNA transport, DNA repair and damage response. Binds to ssRNA containing the consensus sequence 5’-AGGUAA-3’. Binds to nascent pre-mRNAs and acts as a molecular mediator between RNA polymerase II and U1 small nuclear ribonucleoprotein thereby coupling transcription and splicing. Also binds its own pre-mRNA and autoregulates its expression; this autoregulation mechanism is mediated by non-sense-mediated decay. Plays a role in DNA repair mechanisms by promoting D-loop formation and homologous recombination during DNA double-strand break repair. In neuronal cells, plays crucial roles in dendritic spine formation and stability, RNA transport, mRNA stability and synaptic homeostasis.

Subunit / interactions. Self-oligomerizes (via N-terminal region). Oligomerization is essential for chromatin binding. Component of nuclear riboprotein complexes. Interacts with ILF3, TDRD3 and SF1. Interacts through its C-terminus with SFRS13A. Interacts with OTUB1 and SARNP. Interacts with LRSAM1. Interacts with SAFB1 in a DNA-dependent manner; this interaction tethers FUS to chromatin. Interacts with MATR3. Interacts with SNRNP70 and POLR2A; these interactions couple RNA transcription and splicing. Interacts (through its RNA-binding domain) with RALY (through its RNA-binding domain); both are components of the same RNPs.

Subcellular location. Nucleus.

Tissue specificity. Ubiquitous.

Post-translational modifications. Arg-216 and Arg-218 are dimethylated, probably to asymmetric dimethylarginine. Phosphorylated in its N-terminal serine residues upon induced DNA damage. ATM and DNA-PK are able to phosphorylate FUS N-terminal region.

Disease relevance. A chromosomal aberration involving FUS is found in a patient with malignant myxoid liposarcoma. Translocation t(12;16)(q13;p11) with DDIT3. A chromosomal aberration involving FUS is a cause of acute myeloid leukemia (AML). Translocation t(16;21)(p11;q22) with ERG. Angiomatoid fibrous histiocytoma (AFH) [MIM:612160] A distinct variant of malignant fibrous histiocytoma that typically occurs in children and adolescents and is manifest by nodular subcutaneous growth. Characteristic microscopic features include lobulated sheets of histiocyte-like cells intimately associated with areas of hemorrhage and cystic pseudovascular spaces, as well as a striking cuffing of inflammatory cells, mimicking a lymph node metastasis. The gene represented in this entry is involved in disease pathogenesis. A chromosomal aberration involving FUS is found in a patient with angiomatoid fibrous histiocytoma. Translocation t(12;16)(q13;p11.2) with ATF1 generates a chimeric FUS/ATF1 protein. Amyotrophic lateral sclerosis 6, with or without frontotemporal dementia (ALS6) [MIM:608030] A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. The disease is caused by variants affecting the gene represented in this entry. Tremor, hereditary essential 4 (ETM4) [MIM:614782] A common movement disorder mainly characterized by postural tremor of the arms. Head, legs, trunk, voice, jaw, and facial muscles may also be involved. The condition can be aggravated by emotions, hunger, fatigue and temperature extremes, and may cause a functional disability or even incapacitation. Inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.

Similarity. Belongs to the RRM TET family.

Isoforms (2)

UniProt IDNamesCanonical?
P35637-1Longyes
P35637-2Short

RefSeq proteins (3): NP_001164105, NP_001164408, NP_004951* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000504RRM_domDomain
IPR001876Znf_RanBP2Domain
IPR012677Nucleotide-bd_a/b_plait_sfHomologous_superfamily
IPR034870TET_famFamily
IPR035979RBD_domain_sfHomologous_superfamily
IPR036443Znf_RanBP2_sfHomologous_superfamily

Pfam: PF00076, PF00641

UniProt features (109 total): modified residue 33, sequence variant 23, strand 17, compositionally biased region 12, turn 7, helix 6, region of interest 3, site 2, chain 1, domain 1, zinc finger region 1, cross-link 1, splice variant 1, sequence conflict 1

Structure

Experimental structures (PDB)

23 structures by resolution:

PDBTitleMethodResolution (Å)
6KJ3120kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.60 AELECTRON CRYSTALLOGRAPHY0.6
6KJ1200kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.65 AELECTRON CRYSTALLOGRAPHY0.65
6KJ4120kV MicroED structure of FUS (37-42) SYSGYS solved from single crystal at 0.65 AELECTRON CRYSTALLOGRAPHY0.65
6KJ2200kV MicroED structure of FUS (37-42) SYSGYS solved from single crystal at 0.67 AELECTRON CRYSTALLOGRAPHY0.67
5XSGUltrahigh resolution structure of FUS (37-42) SYSGYS determined by MicroEDELECTRON CRYSTALLOGRAPHY0.73
6BWZSYSGYS from low-complexity domain of FUS, residues 37-42X-RAY DIFFRACTION1.1
6BXVSYSSYGQS from low-complexity domain of FUS, residues 54-61X-RAY DIFFRACTION1.1
6BZPSTGGYG from low-complexity domain of FUS, residues 77-82ELECTRON CRYSTALLOGRAPHY1.1
5XRRCrystal structure of FUS (54-59) SYSSYGX-RAY DIFFRACTION1.5
4FDDCrystal structure of KAP beta2-PY-NLSX-RAY DIFFRACTION2.3
6XFMMolecular structure of the core of amyloid-like fibrils formed by residues 111-214 of FUSELECTRON MICROSCOPY2.62
7CYLCrystal structure of Karyopherin-beta2 in complex with FUS PY-NLS(P525L)X-RAY DIFFRACTION2.7
5YVICrystal structure of Karyopherin beta2 in complex with FUS(456-526)X-RAY DIFFRACTION2.9
7VQQCryo-EM structure of amyloid fibril formed by FUS low complexity domainELECTRON MICROSCOPY2.9
4FQ3Crystal structure of transportin/FUS-NLSX-RAY DIFFRACTION3
5YVHCrystal structure of Karyopherin beta2 in complex with FUS(371-526)X-RAY DIFFRACTION3.15
5YVGCrystal structure of Karyopherin beta2 in complex with FUS(full length)X-RAY DIFFRACTION4.05
2LA6Solution NMR Structure of RRM domain of RNA-binding protein FUS from homo sapiens …SOLUTION NMR
2LCWsolution structure of FUS/TLS RRM domainSOLUTION NMR
5W3NMolecular structure of FUS low sequence complexity domain protein fibrilsSOLID-STATE NMR
6G99Solution structure of FUS-ZnF bound to UGGUGSOLUTION NMR
6GBMSolution structure of FUS-RRM bound to stem-loop RNASOLUTION NMR
6SNJSolution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem …SOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P35637-F154.960.09

Human Protein Atlas

Protein class: Predicted intracellular proteins, Plasma proteins, Cancer-related genes, Disease related genes, Human disease related genes

Protein evidence: Evidence at protein level

Subcellular location (HPA, imaging): nucleoplasm

Antibody reliability (HPA): IH supported · IF supported

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (2)

PositionRole
175breakpoint for translocation to form chimeric fus/atf1 protein
266–267breakpoint for translocation to form fus/tls-chop oncogene

Post-translational modifications (34)

TypePositions
Phosphoserine26, 30, 42, 221, 277, 340
Asymmetric dimethylarginine216, 218, 242, 244, 248, 251, 259, 377, 383, 386, 388, 394, 407, 473, 476, 481, 485, 487, 491, 495, 498, 503
Omega-n-methylarginine216, 218, 407, 503
Phosphothreonine286
Glycyl lysine isopeptide (lys-gly) (interchain with g-cter in sumo2)334

Function

Pathways and Gene Ontology

Reactome pathways

4 curated (TAS) of 6; 1 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

6 pathways:

IDPathwayEvidence
R-HSA-9918481Dengue Virus-Host Interactions ⚕curated
R-HSA-72203Processing of Capped Intron-Containing Pre-mRNAcurated
R-HSA-9770562mRNA Polyadenylationcurated
R-HSA-72163mRNA Splicing - Major Pathwaycurated
R-HSA-8953854Metabolism of RNA—
R-HSA-72172mRNA Splicing—

MSigDB gene sets: 531 (showing top): GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, GGGACCA_MIR133A_MIR133B, MORF_DNMT1, ELVIDGE_HYPOXIA_DN, GOBP_REGULATION_OF_DNA_RECOMBINATION, MORF_ESPL1, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_REGULATION_OF_MRNA_CATABOLIC_PROCESS, ENK_UV_RESPONSE_KERATINOCYTE_UP, MORF_UBE2I, MORF_HDAC1, MORF_UBE2N, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MORF_CDK2, HSIAO_HOUSEKEEPING_GENES

GO Biological Process (10): regulation of DNA-templated transcription (GO:0006355), regulation of transcription by RNA polymerase II (GO:0006357), RNA splicing (GO:0008380), regulation of RNA splicing (GO:0043484), mRNA stabilization (GO:0048255), protein homooligomerization (GO:0051260), membraneless organelle assembly (GO:0140694), positive regulation of double-strand break repair via homologous recombination (GO:1905168), amyloid fibril formation (GO:1990000), positive regulation of DNA-templated transcription (GO:0045893)

GO Molecular Function (12): DNA binding (GO:0003677), chromatin binding (GO:0003682), transcription coregulator activity (GO:0003712), transcription coactivator activity (GO:0003713), RNA binding (GO:0003723), mRNA 3’-UTR binding (GO:0003730), zinc ion binding (GO:0008270), identical protein binding (GO:0042802), molecular condensate scaffold activity (GO:0140693), nucleic acid binding (GO:0003676), protein binding (GO:0005515), metal ion binding (GO:0046872)

GO Cellular Component (7): nucleus (GO:0005634), nucleoplasm (GO:0005654), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), presynaptic cytosol (GO:0099523), postsynaptic cytosol (GO:0099524), cytoplasm (GO:0005737)

Reactome top-level categories

5 top-level categories:

CategoryPathways
mRNA Splicing1
Metabolism of RNA1
mRNA 3’-end processing1
Dengue Virus Infection1
Processing of Capped Intron-Containing Pre-mRNA1

GO top-level categories

38 GO namespaces:

CategoryTerms
binding3
DNA-templated transcription2
regulation of gene expression2
regulation of DNA-templated transcription2
nucleic acid binding2
cellular anatomical structure2
synapse2
cytosol2
regulation of RNA biosynthetic process1
transcription by RNA polymerase II1
RNA processing1
RNA splicing1
regulation of primary metabolic process1
regulation of mRNA stability1
RNA stabilization1
negative regulation of mRNA catabolic process1
protein complex oligomerization1
organelle assembly1
double-strand break repair via homologous recombination1
regulation of double-strand break repair via homologous recombination1
positive regulation of DNA recombination1
positive regulation of double-strand break repair1
protein metabolic process1
supramolecular fiber organization1
positive regulation of RNA biosynthetic process1
transcription regulator activity1
transcription coregulator activity1
positive regulation of DNA-templated transcription1
mRNA binding1
transition metal ion binding1
protein binding1
protein-macromolecule adaptor activity1
cation binding1
intracellular membrane-bounded organelle1
nuclear lumen1
presynapse1
postsynapse1
intracellular anatomical structure1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 16 of 29 annotations. The rest are phylogenetic / computational / electronic (IEA).

16 experimentally-supported GO terms:

GO termNSEvidence
RNA splicingBPdirect assay
amyloid fibril formationBPdirect assay
mRNA stabilizationBPdirect assay
membraneless organelle assemblyBPdirect assay
positive regulation of double-strand break repair via homologous recombinationBPdirect assay
protein homooligomerizationBPdirect assay
regulation of DNA-templated transcriptionBPdirect assay
regulation of RNA splicingBPdirect assay
regulation of transcription by RNA polymerase IIBPdirect assay
nucleoplasmCCdirect assay
nucleusCCdirect assay
RNA bindingMFdirect assay
chromatin bindingMFdirect assay
identical protein bindingMFphysical interaction
molecular condensate scaffold activityMFdirect assay
transcription coactivator activityMFdirect assay

Protein interactions and networks

STRING

showing 15 of 3,838 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
FUSTARDBPQ13148970
FUSA0A087WTZ4A0A087WTZ4966
FUSSOD1P00441929
FUSC9orf72Q96LT7892
FUSVAPBO95292832
FUSCREB3L2Q70SY1824
FUSATF1P18846820
FUSSETXQ7Z333818
FUSALS2Q96Q42810
FUSOPTNQ96CV9800
FUSUBQLN2Q9UHD9799
FUSSRSF10O75494795
FUSVCPP55072772
FUSATXN2Q99700766
FUSNR4A3Q92570762

IntAct

Human interaction partners of FUS in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

showing 30 of 69 partners by confidence:

PartnerInteraction typeMIscoreRecords
TARDBPassociation0.7508
TAF15physical association0.7403
SAFBphysical association0.7306
MATR3association0.7303
BCAR3physical association0.6804
EIF1Bphysical association0.6804
MAGEB2physical association0.6804
RYBPphysical association0.6703
HNRNPA1association0.6701
PRMT1physical association0.6608
RBMXphysical association0.6601
RALYproximity0.6405
DHX9colocalization0.6301
EP300physical association0.5904
TNPO1direct interaction0.5903
SMN1direct interaction0.5901
GSK3Bphysical association0.5604
BAG6physical association0.5603
CBLBphysical association0.5603
CSNK1Dphysical association0.5603
GRIN1physical association0.5603
OTUB1physical association0.5603
PBX4physical association0.5603
PTBP2physical association0.5603
RELAphysical association0.5603
RPP25physical association0.5603
RXRAphysical association0.5603
SEM1physical association0.5603
SPATA22physical association0.5603
VCLphysical association0.5603

BioGRID (1,107 interactions; top human partners by supporting records in a sample of 600 records): SMARCA4 (Affinity Capture-Western; 5 records), HNRNPD (Affinity Capture-MS; 4 records), PRMT1 (Affinity Capture-MS; 4 records), SFPQ (Affinity Capture-MS; 4 records), AKT1 (Affinity Capture-Western; 3 records), ARID1A (Affinity Capture-Western; 3 records), CDC5L (Affinity Capture-MS; 3 records), CTDSPL2 (Affinity Capture-MS; 3 records), HNRNPL (Affinity Capture-MS; 3 records), MATR3 (Affinity Capture-MS; 3 records), SNRPC (Affinity Capture-MS; 3 records), UBQLN2 (Affinity Capture-MS; 3 records), AGR2 (Proximity Label-MS; 2 records), BRCA1 (Affinity Capture-MS; 2 records), CDK9 (Affinity Capture-MS; 2 records)

SIGNOR signaling

showing 32 of 33 signaling interactions:

AEffectBMechanism
FUS“up-regulates activity”PA2G4sumoylation
FUS“up-regulates activity”GEMIN4relocalization
FUS“up-regulates activity”GEMIN6relocalization
FUS“up-regulates activity”SMN1relocalization
FUS“up-regulates quantity by stabilization”CSDE1“post transcriptional regulation”
PRMT1“down-regulates activity”FUSmethylation
FUS“up-regulates quantity”Protein_aggregates
FUS“down-regulates activity”DHX9relocalization
FUS“down-regulates activity”DDX3Xrelocalization
Exosome_Complex“up-regulates activity”FUSrelocalization
D-glucitol“down-regulates activity”FUSrelocalization
Osmotic_stress“down-regulates activity”FUSrelocalization
mTORC2“down-regulates activity”FUS
FUSdown-regulatesProtein_synthesis
SAFB“up-regulates activity”FUSrelocalization
FUS“up-regulates activity”MATR3relocalization
FUS“up-regulates activity”SNRNP70binding
EGFR“up-regulates activity”FUSphosphorylation
ABL1“down-regulates activity”FUSphosphorylation
SF1down-regulatesFUSbinding
FUS“up-regulates quantity”DLG4“post transcriptional regulation”
FUS“up-regulates quantity”SHANK1“post transcriptional regulation”
FUS“down-regulates quantity by repression”HNRNPA2B1“post transcriptional regulation”
FUS“down-regulates quantity by repression”DUSP22“post transcriptional regulation”
FUS“down-regulates quantity by repression”MPHOSPH9“post transcriptional regulation”
FUS“down-regulates quantity by repression”ADARB1“post transcriptional regulation”
FUS“down-regulates quantity by repression”GRIA4“post transcriptional regulation”
FUS“down-regulates quantity by repression”AGRN“post transcriptional regulation”
FUS“down-regulates quantity by repression”VPS16“post transcriptional regulation”
FUS“down-regulates quantity by repression”ATXN2“post transcriptional regulation”
FUS“down-regulates quantity by repression”AMPA“post transcriptional regulation”
TNPO1“up-regulates activity”FUSrelocalization

Protein complexes (CORUM) (4)

Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).

4 complexes by size:

ComplexSubunitsMembers
Spliceosome, E complex129RBM17, DDX39A, GEMIN2, NCBP2, PRPF31, SART3, SF3A2, SNRPA, SRSF7, DDX39B, DHX15, GEMIN5, SCAF4, SMARCB1, SNRPD3, SYNCRIP, U2AF2, HNRNPC, SF3B2, SMARCC2, SFSWAP, USP39, GEMIN6, HNRNPK, RBM42, SF3B1, SF3B4, SNRPG, SRSF6, BCAS2, SMN1, CPSF7, SMARCE1, SRSF8, ARID1A, LSM4, SNRPC, CHD8, FUS, SNRNP70, SRSF11, NUDT21, PBRM1, SNRPB2, SNRPD1, YBX1, SF1, SNRPD2, SRSF2, SRSF5, PPIH, SRSF3, DDX20, SART1, SRSF1, SRSF4, PRPF19, RBM39, RBMXL2, SREK1, PRPF3, SMARCA2, U2AF1, SF3B6, SMARCA1, CPSF1, DDX23, DHX9, RUVBL1, SNRPF, SRRM2, ALYREF, HNRNPA0, HNRNPH1, PCBP2, RBM10, SF3B3, STRAP, HNRNPR, RBM25, ACTBL2, CHERP, SNRPA1, ACTL6A, DDX46, HNRNPL, RBM7, CPSF6, ARID2, DNAJC8, EFTUD2, KHSRP, RUVBL2, SMARCA4, PCBP1, SNRNP40, SNRPE, PRPF4, PRPF8, SF3A1, SF3A3, SNRNP200, ZCCHC8, DDX5, LUC7L3, SMARCC1, HNRNPA2B1, HNRNPD, HTATSF1, LUC7L2, PHF5A, PRPF6, SMARCD1, SNRPB, GEMIN8, U2SURP, NCBP1, GEMIN4, HNRNPU, MTREX, ARID1B, CHD4, HNRNPM, PRPF40A, HNRNPF, SRRT, DDX17, HNRNPA1, PUF60
Spliceosome, A complex112RBM39, SAP30BP, CDK11A, CHERP, HNRNPA1, HNRNPK, HNRNPR, HNRNPU, RBM25, SF3A1, DDX46, HNRNPA3, RNPS1, SART1, SF1, SF3A2, SF3B4, SNRPB, ACIN1, CCAR2, DHX9, ELAVL1, ILF2, SF3B3, SRSF5, HNRNPA2B1, CD2BP2, DDX5, PUF60, RBM17, SNRPA1, TCERG1, ZC3H18, SNRPD1, SRSF2, SYNCRIP, ZNF207, CTNNBL1, HSPA8, NCBP2, SF3B2, TRA2B, YBX1, RBM10, SF3A3, SRRM1, SRSF6, SRSF7, SUGP1, DDX42, DNAJC8, EFTUD2, PRCC, SF3B5, SMNDC1, SNRNP200, WBP11, CDC5L, PPP1R8, PRPF6, BCAS2, NCBP1, PRPF19, PRPF3, SNRPD3, SRSF4, U2AF2, HNRNPUL1, NRIP2, PHF5A, RBM5, RBMX, SNRPA, SRRM2, U2AF1, CCAR1, CFAP20, CIRBP, DDX23, SF3B1, SF3B6, SNRPB2, SNRPE, BUB3, DHX15, PCBP1, PPP1CA, PQBP1, SNRNP70, SRSF1, U2SURP, DDX17, SNRPC, SNRPD2, SNRPF, SNRPG, SRRT, SRSF3, SRSF9, AGGF1, FUS, HNRNPC, HTATSF1, ILF3, PLRG1, SEC31B, TRIR, CWC15, HNRNPAB, PNN, PRPF40A, PRPF8
Large Drosha complex20DDX1, FUS, RALY, TARDBP, DDX17, DHX15, HNRNPH1, HNRNPM, DDX3X, DROSHA, HNRNPU, HNRNPUL1, ILF2, TAF15, DDX5, DGCR8, EWSR1, HNRNPDL, ILF3, SRPK1
DGCR8 multiprotein complex11DDX17, FUS, HNRNPH1, HNRNPR, HSPA5, NCL, DDX5, DGCR8, DHX9, HNRNPU, ILF3

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 69 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
mRNA Polyadenylation610.8×3e-03
mRNA Splicing - Major Pathway77.8×3e-03
Metabolism of RNA97.7×1e-03

GO biological processes:

GO termPartnersFoldFDR
regulation of alternative mRNA splicing, via spliceosome518.5×2e-03
mRNA splicing, via spliceosome68.3×7e-03

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: ambiguous (mixed evidence) across 1 cancer types — HCC.

intOGen’s role is a computational inference from cohort mutation patterns and may diverge from the gene’s curated/literature role; read it alongside the evidence above.

Genetic variants

Variant evidence for FUS: 704 ClinVar records (48 pathogenic / likely pathogenic); 3 GWAS associations. Per-variant detail is on Sugi Variant.

ClinVar

704 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic31
Likely pathogenic17
Uncertain significance293
Likely benign190
Benign47

Top pathogenic / likely-pathogenic (15)

Showing the 15 best-reviewed of 48 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.

Variant IDHGVSClassificationReviewSubmitters
280110NM_004960.4(FUS):c.1574C>T (p.Pro525Leu)Pathogeniccriteria provided, multiple submitters, no conflicts10
16224NM_004960.4(FUS):c.1561C>T (p.Arg521Cys)Pathogeniccriteria provided, multiple submitters, no conflicts8
16222NM_004960.4(FUS):c.1561C>G (p.Arg521Gly)Pathogeniccriteria provided, multiple submitters, no conflicts6
16225NM_004960.4(FUS):c.1562G>A (p.Arg521His)Pathogeniccriteria provided, multiple submitters, no conflicts5
29707NM_004960.4(FUS):c.1483C>T (p.Arg495Ter)Pathogeniccriteria provided, multiple submitters, no conflicts5
1458206NM_004960.4(FUS):c.1509_1510del (p.Gly504fs)Pathogeniccriteria provided, multiple submitters, no conflicts5
1073222NM_004960.4(FUS):c.1554_1557del (p.Gln519fs)Pathogeniccriteria provided, multiple submitters, no conflicts3
2925592NM_004960.4(FUS):c.1540A>G (p.Arg514Gly)Pathogeniccriteria provided, multiple submitters, no conflicts2
16223NM_004960.4(FUS):c.1553G>A (p.Arg518Lys)Pathogeniccriteria provided, single submitter2
280109NM_004960.4(FUS):c.1572G>C (p.Arg524Ser)Pathogeniccriteria provided, single submitter1
280356NM_004960.4(FUS):c.1504_1505del (p.Asp502fs)Pathogeniccriteria provided, single submitter1
280602NM_004960.4(FUS):c.1510_1514dup (p.Phe506fs)Pathogeniccriteria provided, single submitter1
665141NM_004960.4(FUS):c.1509_1510dup (p.Gly504fs)Pathogeniccriteria provided, single submitter1
817574NM_004960.4(FUS):c.1022_1023del (p.Ser340_Phe341insTer)Pathogeniccriteria provided, single submitter1
847302NM_004960.4(FUS):c.1541+1G>APathogeniccriteria provided, single submitter1

Per-variant reference — Sugi Variant

Explore FUS’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 23 predictions of 882):

Position(s)EffectΔscoreSites
16:31180228–31180229donor_loss1.00005
16:31183849acceptor_gain1.0000
16:31183852acceptor_gain1.0000
16:31184000donor_gain1.0000
16:31184003–31184004donor_loss1.00003
16:31184936acceptor_gain1.0000
16:31184937–31184938acceptor_loss1.00005
16:31185180–31185181donor_loss1.00004
16:31188314acceptor_gain1.0000
16:31189118acceptor_gain1.0000

AlphaMissense

1,564 missense substitutions predicted likely pathogenic (of 3,410 scored), across 400 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
M32190.9921.000
M51190.8710.975
F30581.0001.000
D34381.0001.000
D42581.0001.000
N43581.0001.000
N43781.0001.000
F28880.9991.000
F35480.9991.000
F43880.9991.000
N28480.9981.000
N44580.9981.000
F36880.9961.000
D28080.9941.000
F35980.9931.000
D32780.9921.000
N28580.9901.000
D28380.9891.000
F34180.9881.000
D34280.9881.000

HPA cancer prognostics

RNA cancer specificity: Low cancer specificity

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

2 prognostic cancer types:

CancerPrognosticp-value
Kidney Renal Clear Cell Carcinoma (TCGA)favorable4.03e-06
Liver Hepatocellular Carcinoma (validation)unfavorable0.000737

Disease associations

OMIM: gene MIM:137070 | disease phenotypes: MIM:608030, MIM:614782, MIM:615972

GenCC curated gene-disease

4 curated gene-disease records:

DiseaseClassificationInheritanceRecords
amyotrophic lateral sclerosisDefinitiveAutosomal dominant2
amyotrophic lateral sclerosis type 6StrongAutosomal dominant2
juvenile amyotrophic lateral sclerosisSupportiveAutosomal recessive
tremor, hereditary essential, 4LimitedAutosomal dominant2

ClinGen Gene-Disease Validity

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

1 validity classifications:

DiseaseClassificationInheritance
amyotrophic lateral sclerosis type 6DefinitiveAD

Genomics England panels (PanelApp)

Clinical diagnostic gene panels including this gene (3 panels, 3 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.

3 panels:

PanelRating
Adult-onset neurological disordersgreen
Amyotrophic lateral sclerosis/motor neuron diseasegreen
Neurodegenerative disorders, adult onsetgreen

Mondo (5): amyotrophic lateral sclerosis type 6 (MONDO:0011951), tremor, hereditary essential, 4 (MONDO:0013888), juvenile amyotrophic lateral sclerosis (MONDO:0017593), nanophthalmos 4 (MONDO:0014426), amyotrophic lateral sclerosis (MONDO:0004976)

Orphanet (4): Frontotemporal dementia with motor neuron disease (Orphanet:275872), Amyotrophic lateral sclerosis (Orphanet:803), Juvenile amyotrophic lateral sclerosis (Orphanet:300605), Nanophthalmos (Orphanet:35612)

HPO phenotypes

showing 60 of 118 phenotypes (HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000020Urinary incontinence
HP:0000217Xerostomia
HP:0000252Microcephaly
HP:0000508Ptosis
HP:0000605Supranuclear gaze palsy
HP:0000639Nystagmus
HP:0000708Atypical behavior
HP:0000712Emotional lability
HP:0000716Depression
HP:0000734Disinhibition
HP:0000738Hallucinations
HP:0000739Anxiety
HP:0000741Apathy
HP:0001251Ataxia
HP:0001257Spasticity
HP:0001260Dysarthria
HP:0001263Global developmental delay
HP:0001264Spastic diplegia
HP:0001265Hyporeflexia
HP:0001276Hypertonia
HP:0001283Bulbar palsy
HP:0001288Gait disturbance
HP:0001300Parkinsonism
HP:0001308Tongue fasciculations
HP:0001317Abnormal cerebellum morphology
HP:0001324Muscle weakness
HP:0001332Dystonia
HP:0001347Hyperreflexia
HP:0001348Brisk reflexes
HP:0001482Subcutaneous nodule
HP:0001618Dysphonia
HP:0001824Weight loss
HP:0002015Dysphagia
HP:0002027Abdominal pain
HP:0002061Lower limb spasticity
HP:0002071Abnormality of extrapyramidal motor function
HP:0002072Chorea
HP:0002073Progressive cerebellar ataxia
HP:0002094Dyspnea
HP:0002127Abnormal upper motor neuron morphology
HP:0002145Frontotemporal dementia
HP:0002167Abnormal speech pattern
HP:0002169Clonus
HP:0002171Gliosis
HP:0002174Postural tremor
HP:0002179Opisthotonus
HP:0002180Neurodegeneration
HP:0002186Apraxia
HP:0002273Tetraparesis
HP:0002283Global brain atrophy
HP:0002300Mutism
HP:0002307Drooling
HP:0002313Spastic paraparesis
HP:0002314Degeneration of the lateral corticospinal tracts
HP:0002345Action tremor
HP:0002360Sleep disturbance
HP:0002366Abnormal lower motor neuron morphology
HP:0002380Fasciculations
HP:0002385Paraparesis

GWAS associations

3 associations:

StudyTraitp-value
GCST010242_414HDL cholesterol levels7e-9
GCST008115_45Bipolar I disorder5e-7
GCST008103_26Bipolar disorder8e-6

EFO canonical traits (from GWAS)

2 canonical traits:

EFO IDTrait name
EFO:0009963bipolar I disorder
EFO:0004612high density lipoprotein cholesterol measurement

MeSH disease descriptors

2 disease descriptors:

DescriptorNameTree numbers
D000690Amyotrophic Lateral SclerosisC10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050
C567699Amyotrophic Lateral Sclerosis 6, Autosomal Recessive *(supp.)*

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL5724679 (SINGLE PROTEIN)

PharmGKB: 1 entry (CPIC guideline: no)

Binding affinities (BindingDB)

1 measured of 1 human assays (2 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
CHEMBL5653589KD1440 nM

ChEMBL bioactivities

4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.76Kd17.47nMCHEMBL3752910
7.76ED5017.47nMCHEMBL3752910
7.44Kd36.62nMCHEMBL5653589
7.44ED5036.62nMCHEMBL5653589

PubChem BioAssay actives

2 with measured affinity, of 10 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2148404: Binding affinity to human FUS incubated for 45 mins by Kinobead based pull down assaykd0.0175uM
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2148404: Binding affinity to human FUS incubated for 45 mins by Kinobead based pull down assaykd0.0366uM

CTD chemical–gene interactions

87 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Adecreases expression, affects expression, affects splicing3
methylparabenaffects splicing, increases expression3
sodium arseniteaffects expression, affects splicing, increases abundance, affects cotreatment, increases expression3
Benzo(a)pyreneincreases methylation, decreases expression3
deoxynivalenolincreases expression2
perfluorooctanoic aciddecreases expression2
perfluoro-n-nonanoic aciddecreases expression2
2,2’,4,4’-tetrabromodiphenyl etherincreases expression, decreases expression2
bisphenol Sincreases expression, affects expression2
Copperdecreases expression, increases expression, affects binding2
Curcumindecreases expression, increases expression2
Silicon Dioxideincreases expression2
Cyclosporinedecreases expression2
Aflatoxin B1increases expression2
aristolochic acid Idecreases expression1
FR900359affects phosphorylation1
graphene oxidedecreases expression1
2,4,6-tribromophenolincreases expression1
triphenyl phosphateaffects expression1
alpha-pineneaffects cotreatment, decreases expression, increases abundance1
nobiletindecreases expression, decreases reaction1
sodium arsenatedecreases expression, decreases reaction1
pyrogallol 1,3-dimethyl etheraffects cotreatment, decreases expression, affects localization, increases expression1
trichostatin Aaffects cotreatment, increases expression1
tetrabromobisphenol Adecreases expression1
butylidenephthalideincreases expression1
ferrous chloridedecreases expression1
cupric chlorideincreases expression1
nickel sulfateincreases expression1
coumarinincreases phosphorylation1

ChEMBL screening assays

7 unique, capped per target: 7 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5651446BindingBinding affinity to human FUS incubated for 45 mins by Kinobead based pull down assayNVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — *ChemMedChem*

Cellosaurus cell lines

77 cell lines: 47 induced pluripotent stem cell, 15 cancer cell line, 10 transformed cell line, 4 finite cell line, 1 embryonic stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_1927YNH-1Cancer cell lineMale
CVCL_A0TJHEK293 FUS KOTransformed cell lineFemale
CVCL_A1VSNCC-MLPS1-C1Cancer cell lineMale
CVCL_A454JIH-4Cancer cell lineMale
CVCL_A455TSU-1621MTCancer cell lineFemale
CVCL_A5CFTEXTransformed cell lineSex unspecified
CVCL_A5QYKCLi008-AInduced pluripotent stem cellMale
CVCL_A5QZKCLi009-AInduced pluripotent stem cellFemale
CVCL_A5RAKCLi010-AInduced pluripotent stem cellMale
CVCL_A7NLIRTA17Cancer cell lineFemale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

showing 60 of 300 trials:

NCTPhaseStatusTitle
NCT00542412Phase 4COMPLETEDCARE Canadian ALS Riluzole Evaluation
NCT00560287Phase 4UNKNOWNNon-Invasive Ventilation in Amyotrophic Lateral Sclerosis
NCT00613899Phase 4COMPLETEDFeasibility of Telesurveillance and Home Cough Assistance for Amyotrophic Lateral Patients (ALS)
NCT04997954Phase 4UNKNOWNEMERALD TRIAL Open Label Extension Study
NCT06849115Phase 4COMPLETEDEffects of L-Carnitine in Amyotrophic Lateral Sclerosis Patients With CHCHD10 Mutations
NCT07223723Phase 4ACTIVE_NOT_RECRUITINGA Study to Learn More About the Long-Term Safety of Tofersen (Qalsody) in Chinese Participants With SOD-1 Amyotrophic Lateral Sclerosis (ALS)
NCT00021697Phase 3COMPLETEDSafety/Efficacy of AVP-923 in the Treatment of Emotional Lability (Uncontrolled Crying & Laughing) in Patients With ALS
NCT00035815Phase 3COMPLETEDInsulin-like Growth Factor-1 in Amyotrophic Lateral Sclerosis (ALS) Trial
NCT00047723Phase 3COMPLETEDMinocycline to Treat Amyotrophic Lateral Sclerosis
NCT00069186Phase 3UNKNOWNStudy of Creatine Monohydrate in Patients With Amyotrophic Lateral Sclerosis
NCT00136110Phase 3COMPLETEDTrial of Sodium Valproate in Amyotrophic Lateral Sclerosis
NCT00330681Phase 3COMPLETEDEfficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS)
NCT00349622Phase 3COMPLETEDClinical Trial Ceftriaxone in Subjects With ALS
NCT00372879Phase 3COMPLETEDClinical Trial of Vitamin E to Treat Muscular Cramps in Patients With ALS
NCT00415519Phase 3COMPLETEDEfficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) Who Met Severity Classification III
NCT00424463Phase 3COMPLETEDExpanded Controlled Study of Safety and Efficacy of MCI-186 in Patients With Amyotrophic Lateral Sclerosis (ALS)
NCT00839033Phase 3TERMINATEDEvaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders
NCT00868166Phase 3COMPLETEDSafety and Efficacy of TRO19622 as add-on Therapy to Riluzole Versus Placebo in Treatment of Patients Suffering From ALS
NCT00965497Phase 3COMPLETEDEscitalopram (Lexapro) for Depression MS or ALS
NCT01016522Phase 3TERMINATEDSafety and Tolerability of the Ketogenic Diet in Amyotrophic Lateral Sclerosis (ALS)
NCT01160263Phase 3COMPLETEDStudy of Dopamine and Serotonin Transporters in Patients With Amyotrophic Lateral Sclerosis and Controls
NCT01281189Phase 3COMPLETEDPhase 3 Study of Dexpramipexole in ALS
NCT01492686Phase 3COMPLETEDPhase 3 Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis
NCT01583088Phase 3TERMINATEDEarly Stage Amyotrophic Lateral Sclerosis Phrenic Stimulation
NCT01622088Phase 3TERMINATEDPhase 3 Extension Study of Dexpramipexole in ALS
NCT02496767Phase 3COMPLETEDVentilatory Investigation of Tirasemtiv and Assessment of Longitudinal Indices After Treatment for a Year
NCT02623699Phase 3COMPLETEDAn Efficacy, Safety, Tolerability, Pharmacokinetics and Pharmacodynamics Study of BIIB067 (Tofersen) in Adults With Inherited Amyotrophic Lateral Sclerosis (ALS)
NCT02936635Phase 3COMPLETEDA Study for Patients Who Completed VITALITY-ALS (CY 4031)
NCT03127267Phase 3RECRUITINGEfficacy and Safety of Masitinib Versus Placebo in the Treatment of ALS Patients
NCT03280056Phase 3COMPLETEDSafety and Efficacy of Repeated Administrations of NurOwn® in ALS Patients
NCT03491462Phase 3COMPLETEDArimoclomol in Amyotropic Lateral Sclerosis
NCT03505021Phase 3COMPLETEDEffects of Oral Levosimendan (ODM-109) on Respiratory Function in Patients With ALS
NCT03548311Phase 3COMPLETEDClinical Trial of Ultra-high Dose Methylcobalamin for ALS
NCT03690791Phase 3UNKNOWNEfficacy of Cannabinoids in Amyotrophic Lateral Sclerosis or Motor Neurone Disease
NCT03800524Phase 3UNKNOWNSafety and Efficacy of TUDCA as add-on Treatment in Patients Affected by ALS
NCT03836716Phase 3TERMINATEDArimoclomol in Amyotropic Lateral Sclerosis - Open Label Extension Trial
NCT03948178Phase 3TERMINATEDEffects of Oral Levosimendan on Respiratory Function in Patients With Amyotrophic Lateral Sclerosis (ALS): Open-Label Extension
NCT04165824Phase 3COMPLETEDSafety Study of Oral Edaravone Administered in Subjects With ALS
NCT04248465Phase 3TERMINATEDAn Efficacy and Safety Study of Ravulizumab in ALS Participants
NCT04569084Phase 3TERMINATEDEfficacy and Safety Study of Oral Edaravone Administered in Subjects With ALS
NCT04577404Phase 3COMPLETEDSafety Extension Study of Oral Edaravone Administered in Subjects With Amyotrophic Lateral Sclerosis (ALS)
NCT04745299Phase 3COMPLETEDEvaluation the Efficacy and Safety of Mutiple Lenzumestrocel (Neuronata-R® Inj.) Treatment in Patients With ALS
NCT04768972Phase 3ACTIVE_NOT_RECRUITINGFUSION: A Study to Evaluate the Efficacy, Safety, Pharmacokinetics and Pharmacodynamics of ION363 in Amyotrophic Lateral Sclerosis Participants With Fused in Sarcoma Mutations (FUS-ALS)
NCT04944784Phase 3TERMINATEDA Study to Evaluate the Efficacy and Safety of Reldesemtiv in Patients With Amyotrophic Lateral Sclerosis (ALS)
NCT05021536Phase 3UNKNOWNPhase III Trial of AMX0035 for Amyotrophic Lateral Sclerosis Treatment
NCT05151471Phase 3TERMINATEDEfficacy and Safety Extension Study of Oral Edaravone Administered in Subjects With ALS
NCT05178810Phase 3COMPLETEDStudy to Investigate the Efficacy and Safety of FAB122 (Daily Oral Edaravone) in Patients With Amyotrophic Lateral Sclerosis
NCT05193994Phase 3TERMINATEDTriumeq in Amyotrophic Lateral Sclerosis
NCT05442775Phase 3TERMINATEDA Phase 3, Open-Label Extension of COURAGE-ALS (CY 5031)
NCT05568615Phase 3COMPLETEDExtension Study Following the Studies MT-1186-A03 or A04 to Evaluate the Safety of Oral Edaravone in Subjects With ALS
NCT05619783Phase 3COMPLETEDExtension Study Evaluating The Safety And Tolerability of AMX0035
NCT05753852Phase 3UNKNOWNOpen Label Extension of TUDCA-ALS Study
NCT05866926Phase 3TERMINATEDStudy to Investigate the Long-term Safety of FAB122 in Patients With Amyotrophic Lateral Sclerosis
NCT06008249Phase 3TERMINATEDPlatform Trial to Assess the Efficacy of Multiple Drugs in Amyotrophic Lateral Sclerosis (ALS)
NCT06658977Phase 3TERMINATEDRolloverTreatment With Triumeq for People With ALS Following the Lighthouse II Trial
NCT06973629Phase 3NOT_YET_RECRUITINGEfficacy and Safety of MSC-NTF (NurOwn) in Participants With Early Symptomatic ALS and Moderate Disease Presentation in ALS (ENDURANCE STUDY)
NCT07174492Phase 3NOT_YET_RECRUITINGEfficacy and Safety of Masitinib in Combination With SoC Versus Placebo in the Treatment of ALS Patients
NCT07322003Phase 3RECRUITINGPridopidine Phase 3 Study to Evaluate Efficacy and Safety in ALS
NCT00004771Phase 2COMPLETEDPhase II Study of Leuprolide and Testosterone for Men With Kennedy’s Disease or Other Motor Neuron Disease
NCT00005674Phase 2COMPLETEDClinical Trial of Creatine in Amyotrophic Lateral Sclerosis [ALS]

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for FUS across ~30M SureChEMBL compounds — explore on Sugi Predict.