FUZ
gene geneOn this page
Also known as FLJ22688FyCPLANE3
Summary
FUZ (fuzzy planar cell polarity protein, HGNC:26219) is a protein-coding gene on chromosome 19q13.33, encoding Protein fuzzy homolog (Q9BT04). Probable planar cell polarity effector involved in cilium biogenesis.
This gene encodes a planar cell polarity protein that is involved in ciliogenesis and directional cell movement. Knockout studies in mice exhibit neural tube defects and defective cilia, and mutations in this gene are associated with neural tube defects in humans. Alternatively spliced transcript variants have been found for this gene.
Source: NCBI Gene 80199 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliopathy (Strong, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 97 total
- Phenotypes (HPO): 40
- MANE Select transcript:
NM_025129
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26219 |
| Approved symbol | FUZ |
| Name | fuzzy planar cell polarity protein |
| Location | 19q13.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22688, Fy, CPLANE3 |
| Ensembl gene | ENSG00000010361 |
| Ensembl biotype | protein_coding |
| OMIM | 610622 |
| Entrez | 80199 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 19 protein_coding, 9 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000313777, ENST00000377092, ENST00000525130, ENST00000525370, ENST00000525800, ENST00000526435, ENST00000526575, ENST00000527111, ENST00000527585, ENST00000527973, ENST00000528043, ENST00000528094, ENST00000529302, ENST00000529634, ENST00000531017, ENST00000533418, ENST00000534008, ENST00000534138, ENST00000881280, ENST00000881281, ENST00000881282, ENST00000881283, ENST00000881284, ENST00000939143, ENST00000939144, ENST00000939145, ENST00000939146, ENST00000939147, ENST00000939148, ENST00000939149, ENST00000956086, ENST00000956087
RefSeq mRNA: 4 — MANE Select: NM_025129
NM_001171937, NM_001352262, NM_001363663, NM_025129
CCDS: CCDS12781, CCDS54293, CCDS86790
Canonical transcript exons
ENST00000313777 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001251873 | 49812996 | 49813292 |
| ENSE00002186940 | 49806866 | 49807374 |
| ENSE00003510926 | 49812251 | 49812335 |
| ENSE00003516956 | 49808574 | 49808638 |
| ENSE00003529157 | 49812615 | 49812736 |
| ENSE00003532065 | 49811363 | 49811467 |
| ENSE00003539309 | 49808414 | 49808488 |
| ENSE00003551816 | 49809378 | 49809575 |
| ENSE00003587933 | 49808717 | 49808823 |
| ENSE00003636849 | 49809163 | 49809258 |
| ENSE00003661417 | 49811631 | 49811699 |
Expression profiles
Bgee: expression breadth ubiquitous, 243 present calls, max score 98.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.4025 / max 347.3354, expressed in 1578 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 182085 | 2.8858 | 1394 |
| 182083 | 1.0897 | 487 |
| 182079 | 0.7509 | 210 |
| 182084 | 0.3329 | 177 |
| 182081 | 0.3016 | 157 |
| 182078 | 0.0225 | 4 |
| 182080 | 0.0191 | 5 |
Top tissues by expression
273 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 98.10 | gold quality |
| right testis | UBERON:0004534 | 97.31 | gold quality |
| left testis | UBERON:0004533 | 97.19 | gold quality |
| testis | UBERON:0000473 | 94.53 | gold quality |
| ventricular zone | UBERON:0003053 | 93.44 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 92.72 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.47 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 92.45 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 92.30 | gold quality |
| cerebellar cortex | UBERON:0002129 | 92.25 | gold quality |
| ganglionic eminence | UBERON:0004023 | 91.97 | gold quality |
| apex of heart | UBERON:0002098 | 91.63 | gold quality |
| right adrenal gland | UBERON:0001233 | 91.56 | gold quality |
| right frontal lobe | UBERON:0002810 | 91.48 | gold quality |
| triceps brachii | UBERON:0001509 | 91.46 | silver quality |
| olfactory bulb | UBERON:0002264 | 91.40 | silver quality |
| right adrenal gland cortex | UBERON:0035827 | 91.31 | gold quality |
| spinal cord | UBERON:0002240 | 91.29 | gold quality |
| left ovary | UBERON:0002119 | 91.27 | gold quality |
| cerebellum | UBERON:0002037 | 91.11 | gold quality |
| prefrontal cortex | UBERON:0000451 | 90.65 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.63 | gold quality |
| putamen | UBERON:0001874 | 90.58 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.57 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 90.57 | gold quality |
| right ovary | UBERON:0002118 | 90.56 | gold quality |
| nucleus accumbens | UBERON:0001882 | 90.46 | gold quality |
| type B pancreatic cell | CL:0000169 | 90.38 | gold quality |
| left adrenal gland | UBERON:0001234 | 90.37 | gold quality |
| pituitary gland | UBERON:0000007 | 90.33 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-134144 | yes | 28.08 |
| E-ANND-3 | yes | 3.65 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
8 targeting FUZ, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6887-3P | 99.66 | 67.83 | 1778 |
| HSA-MIR-4685-5P | 99.25 | 65.99 | 1563 |
| HSA-MIR-6837-5P | 99.25 | 65.47 | 1632 |
| HSA-MIR-223-5P | 99.24 | 68.82 | 1206 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-637 | 97.91 | 64.05 | 1517 |
| HSA-MIR-7113-5P | 97.88 | 67.33 | 1735 |
Literature-anchored findings (GeneRIF, showing 5)
- Data propose that mutations in Fuzzy may account for a subset of neural tube defects in humans. (PMID:21840926)
- results in vitro show that FUZ is responsible for non-small-cell lung cancer (NSCLC) progression and metastasis, suggesting that FUZ can be a potential therapeutic target for NSCLC. (PMID:29421438)
- this study unveils a generic Fuz-mediated apoptotic cell death pathway in neurodegenerative disorders. (PMID:30026307)
- Pan-cancer investigation reveals mechanistic insights of planar cell polarity gene Fuz in carcinogenesis. (PMID:33658400)
- Biallelic loss of function variants in FUZ result in an orofaciodigital syndrome. (PMID:38702430)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fuz | ENSDARG00000079730 |
| mus_musculus | Fuz | ENSMUSG00000011658 |
| rattus_norvegicus | Fuz | ENSRNOG00000053084 |
| drosophila_melanogaster | fy | FBGN0001084 |
Protein
Protein identifiers
Protein fuzzy homolog — Q9BT04 (reviewed: Q9BT04)
All UniProt accessions (11): Q9BT04, E9PK12, E9PKJ4, E9PLA3, E9PS25, G5E9A4, M0QYI7, M0QYX9, M0QZY8, M0R0M0, M0R1D4
UniProt curated annotations — full annotation on UniProt →
Function. Probable planar cell polarity effector involved in cilium biogenesis. May regulate protein and membrane transport to the cilium. Proposed to function as core component of the CPLANE (ciliogenesis and planar polarity effectors) complex involved in the recruitment of peripheral IFT-A proteins to basal bodies. May regulate the morphogenesis of hair follicles which depends on functional primary cilia. Binds phosphatidylinositol 3-phosphate with highest affinity, followed by phosphatidylinositol 4-phosphate and phosphatidylinositol 5-phosphate.
Subunit / interactions. Component of the CPLANE (ciliogenesis and planar polarity effectors) complex, composed of INTU, FUZ and WDPCP. Interacts with CPLANE2. Interacts with CPLANE1.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium basal body.
Similarity. Belongs to the fuzzy family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BT04-1 | 1 | yes |
| Q9BT04-2 | 2 | |
| Q9BT04-3 | 3 |
RefSeq proteins (4): NP_001165408, NP_001339191, NP_001350592, NP_079405* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026069 | Fuzzy | Family |
| IPR043970 | FUZ/MON1/HPS1_longin_3 | Domain |
| IPR043971 | FUZ/MON1/HPS1_longin_2 | Domain |
| IPR043972 | FUZ/MON1/HPS1_longin_1 | Domain |
Pfam: PF19036, PF19037, PF19038
UniProt features (50 total): strand 19, helix 16, turn 9, sequence variant 3, splice variant 2, chain 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7Q3D | ELECTRON MICROSCOPY | 3.35 |
| 9RS9 | ELECTRON MICROSCOPY | 3.4 |
| 9RS8 | ELECTRON MICROSCOPY | 3.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BT04-F1 | 87.68 | 0.62 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5610787 | Hedgehog ‘off’ state |
MSigDB gene sets: 298 (showing top):
GSE45365_NK_CELL_VS_CD11B_DC_UP, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_BODY_MORPHOGENESIS, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_EMBRYONIC_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_EMBRYONIC_SKELETAL_SYSTEM_MORPHOGENESIS, GOBP_NEURAL_TUBE_DEVELOPMENT, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION, FOXO4_01, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION
GO Biological Process (20): establishment of planar polarity (GO:0001736), neural tube closure (GO:0001843), hair follicle development (GO:0001942), negative regulation of cell population proliferation (GO:0008285), regulation of smoothened signaling pathway (GO:0008589), embryonic body morphogenesis (GO:0010172), protein transport (GO:0015031), vesicle-mediated transport (GO:0016192), neural tube development (GO:0021915), negative regulation of cell migration (GO:0030336), intraciliary transport (GO:0042073), positive regulation of cilium assembly (GO:0045724), embryonic skeletal system morphogenesis (GO:0048704), cilium assembly (GO:0060271), negative regulation of canonical Wnt signaling pathway (GO:0090090), negative regulation of neural crest formation (GO:0090301), regulation of cilium assembly (GO:1902017), non-motile cilium assembly (GO:1905515), obsolete negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation (GO:2000314), cell projection organization (GO:0030030)
GO Molecular Function (2): phosphatidylinositol binding (GO:0035091), protein binding (GO:0005515)
GO Cellular Component (5): cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cilium (GO:0005929), extracellular exosome (GO:0070062), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Signaling by Hedgehog | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cilium assembly | 3 |
| transport | 2 |
| cilium organization | 2 |
| cellular anatomical structure | 2 |
| morphogenesis of a polarized epithelium | 1 |
| establishment of tissue polarity | 1 |
| primary neural tube formation | 1 |
| tube closure | 1 |
| hair cycle process | 1 |
| anatomical structure development | 1 |
| skin epidermis development | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| smoothened signaling pathway | 1 |
| regulation of signal transduction | 1 |
| body morphogenesis | 1 |
| embryonic morphogenesis | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| cellular process | 1 |
| nervous system development | 1 |
| tube development | 1 |
| chordate embryonic development | 1 |
| epithelium development | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| negative regulation of cell motility | 1 |
| cilium | 1 |
| transport along microtubule | 1 |
| positive regulation of plasma membrane bounded cell projection assembly | 1 |
| regulation of cilium assembly | 1 |
| positive regulation of organelle assembly | 1 |
| embryonic organ morphogenesis | 1 |
| skeletal system morphogenesis | 1 |
| embryonic skeletal system development | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
Protein interactions and networks
STRING
352 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FUZ | INTU | Q9ULD6 | 995 |
| FUZ | WDPCP | O95876 | 916 |
| FUZ | CPLANE2 | Q9BU20 | 785 |
| FUZ | DVL1 | O14640 | 546 |
| FUZ | DVL2 | O14641 | 536 |
| FUZ | CRYGS | P22914 | 514 |
| FUZ | IFT54 | Q8TDR0 | 480 |
| FUZ | B4GALNT1 | Q00973 | 443 |
| FUZ | IFT43 | Q96FT9 | 440 |
| FUZ | RAB23 | Q9ULC3 | 428 |
| FUZ | WDR35 | Q9P2L0 | 396 |
| FUZ | TSPAN9 | O75954 | 373 |
| FUZ | WDR19 | Q8NEZ3 | 369 |
| FUZ | TBC1D32 | Q96NH3 | 365 |
| FUZ | SPEF1 | Q9Y4P9 | 359 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FUZ | CPLANE2 | psi-mi:“MI:0915”(physical association) | 0.800 |
| CPLANE2 | FUZ | psi-mi:“MI:0915”(physical association) | 0.800 |
| FUZ | INTU | psi-mi:“MI:0915”(physical association) | 0.660 |
| DDX11 | FUZ | psi-mi:“MI:0915”(physical association) | 0.560 |
| DVL3 | FUZ | psi-mi:“MI:0915”(physical association) | 0.460 |
| DVL3 | FUZ | psi-mi:“MI:0403”(colocalization) | 0.460 |
| TMEM25 | NME4 | psi-mi:“MI:0914”(association) | 0.350 |
| FUZ | UBB | psi-mi:“MI:0914”(association) | 0.350 |
| INTU | CCNA2 | psi-mi:“MI:0914”(association) | 0.350 |
| CPLANE2 | PKP1 | psi-mi:“MI:0914”(association) | 0.350 |
| FUZ | UBL4A | psi-mi:“MI:0914”(association) | 0.350 |
| FUZ | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| FUZ | PRORP | psi-mi:“MI:0914”(association) | 0.350 |
| INTU | FUZ | psi-mi:“MI:0915”(physical association) | 0.000 |
| FUZ | CPLANE2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DSCR9 | FUZ | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (43): FUZ (Affinity Capture-MS), FUZ (Affinity Capture-MS), FUZ (Two-hybrid), FUZ (Affinity Capture-MS), INTU (Affinity Capture-MS), OSBPL9 (Affinity Capture-MS), HPS1 (Affinity Capture-MS), OSBPL11 (Affinity Capture-MS), UBB (Affinity Capture-MS), FUZ (Affinity Capture-MS), DDX11 (Affinity Capture-MS), HSPA8 (Affinity Capture-MS), UBE3A (Affinity Capture-MS), BAG6 (Affinity Capture-MS), ACTR6 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JXN2, A2RRH5, A2RUS2, A5D9D4, A6QP75, B2RYG8, G5E872, O08983, P23610, P70295, Q0VF94, Q12980, Q17RQ9, Q2T9P3, Q2TBH1, Q3B756, Q3SZD4, Q3TAA7, Q3UTZ3, Q3UYI6, Q499N3, Q4R4E4, Q4R681, Q4VBE8, Q5RF82, Q5ZIH2, Q60HF3, Q60I27, Q69Z89, Q6P9U1, Q7L1V2, Q7TNM2, Q7Z4K8, Q8BK75, Q8BMQ8, Q8BQX5, Q8N1F8, Q8WVR3, Q8WXI3, Q920N2
Diamond homologs: O16868, Q29NZ8, Q9BT04, Q2HZX7, Q3B756, Q3UYI6
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FUZ | “form complex” | “CPLANE complex” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
97 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 56 |
| Likely benign | 12 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1842 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:49808346:C:CA | donor_gain | 1.0000 |
| 19:49808347:C:A | donor_gain | 1.0000 |
| 19:49808489:CTG:C | acceptor_gain | 1.0000 |
| 19:49808570:TCACC:T | donor_loss | 1.0000 |
| 19:49808571:CAC:C | donor_loss | 1.0000 |
| 19:49808634:GCAGC:G | acceptor_gain | 1.0000 |
| 19:49808635:CAGC:C | acceptor_gain | 1.0000 |
| 19:49808635:CAGCC:C | acceptor_gain | 1.0000 |
| 19:49808636:AGC:A | acceptor_gain | 1.0000 |
| 19:49808636:AGCCT:A | acceptor_loss | 1.0000 |
| 19:49808637:GC:G | acceptor_gain | 1.0000 |
| 19:49808637:GCCTG:G | acceptor_loss | 1.0000 |
| 19:49808638:CC:C | acceptor_gain | 1.0000 |
| 19:49808638:CCTGT:C | acceptor_loss | 1.0000 |
| 19:49808639:C:CC | acceptor_gain | 1.0000 |
| 19:49808640:T:C | acceptor_loss | 1.0000 |
| 19:49811357:CAGTA:C | donor_loss | 1.0000 |
| 19:49811358:AGTAC:A | donor_loss | 1.0000 |
| 19:49811359:GTAC:G | donor_loss | 1.0000 |
| 19:49811360:TA:T | donor_loss | 1.0000 |
| 19:49811361:A:AT | donor_loss | 1.0000 |
| 19:49811362:CC:C | donor_loss | 1.0000 |
| 19:49811463:CTGGC:C | acceptor_gain | 1.0000 |
| 19:49811468:C:CC | acceptor_gain | 1.0000 |
| 19:49811625:CCTCA:C | donor_loss | 1.0000 |
| 19:49811626:CTCAC:C | donor_loss | 1.0000 |
| 19:49811629:A:AC | donor_gain | 1.0000 |
| 19:49811629:A:AG | donor_loss | 1.0000 |
| 19:49811629:AC:A | donor_gain | 1.0000 |
| 19:49811630:C:CA | donor_gain | 1.0000 |
AlphaMissense
2632 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:49812634:A:G | W72R | 0.999 |
| 19:49812634:A:T | W72R | 0.999 |
| 19:49812692:A:C | F52L | 0.999 |
| 19:49812692:A:T | F52L | 0.999 |
| 19:49812694:A:G | F52L | 0.999 |
| 19:49812717:C:T | G44D | 0.999 |
| 19:49812728:G:C | F40L | 0.999 |
| 19:49812728:G:T | F40L | 0.999 |
| 19:49812730:A:G | F40L | 0.999 |
| 19:49811643:C:A | K125N | 0.998 |
| 19:49811643:C:G | K125N | 0.998 |
| 19:49812711:A:T | L46H | 0.998 |
| 19:49812632:C:A | W72C | 0.997 |
| 19:49812632:C:G | W72C | 0.997 |
| 19:49812705:C:T | G48E | 0.997 |
| 19:49812711:A:G | L46P | 0.997 |
| 19:49812729:A:C | F40C | 0.997 |
| 19:49812633:C:G | W72S | 0.996 |
| 19:49812693:A:C | F52C | 0.996 |
| 19:49812702:A:T | V49D | 0.996 |
| 19:49812718:C:G | G44R | 0.996 |
| 19:49813048:C:T | G20E | 0.996 |
| 19:49813067:A:G | C14R | 0.996 |
| 19:49812327:A:G | L81P | 0.995 |
| 19:49812693:A:G | F52S | 0.995 |
| 19:49812706:C:G | G48R | 0.995 |
| 19:49812706:C:T | G48R | 0.995 |
| 19:49813065:G:C | C14W | 0.995 |
| 19:49809401:A:C | Y223D | 0.994 |
| 19:49812715:A:G | S45P | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000367347 (19:49815195 A>T), RS1000978206 (19:49813312 G>A), RS1001121610 (19:49811495 G>A), RS1001527156 (19:49814778 G>A,C), RS1001639181 (19:49808969 G>A,C), RS1001761114 (19:49814020 C>G,T), RS1001808589 (19:49814506 C>T), RS1001985054 (19:49808770 C>A,G,T), RS1002533642 (19:49813285 A>C,G), RS1002575379 (19:49815136 T>G), RS1002589589 (19:49807495 C>G,T), RS1003635913 (19:49806432 C>T), RS1003815357 (19:49811705 A>C), RS1003961653 (19:49813814 TA>T,TAA), RS1004518996 (19:49807654 G>A)
Disease associations
OMIM: gene MIM:610622 | disease phenotypes: MIM:182940, MIM:263520, MIM:208500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ciliopathy | Strong | Autosomal recessive |
| neural tube defects, susceptibility to | Limited | Unknown |
Mondo (5): neural tube defect (MONDO:0018075), neural tube defects, susceptibility to (MONDO:0020705), short-rib thoracic dysplasia 6 with or without polydactyly (MONDO:0009894), Jeune syndrome (MONDO:0018770), ciliopathy (MONDO:0005308)
Orphanet (3): Neural tube defect (Orphanet:3388), Spina bifida and other spinal dysraphisms (Orphanet:823), Jeune syndrome (Orphanet:474)
HPO phenotypes
40 total (30 of 40 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000028 | Cryptorchidism |
| HP:0000062 | Ambiguous genitalia |
| HP:0000069 | Abnormality of the ureter |
| HP:0000073 | Ureteral duplication |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000083 | Renal insufficiency |
| HP:0000086 | Ectopic kidney |
| HP:0000104 | Renal agenesis |
| HP:0000202 | Orofacial cleft |
| HP:0000238 | Hydrocephalus |
| HP:0000822 | Hypertension |
| HP:0000921 | Missing ribs |
| HP:0000960 | Sacral dimple |
| HP:0001012 | Multiple lipomas |
| HP:0001315 | Reduced tendon reflexes |
| HP:0001387 | Joint stiffness |
| HP:0001762 | Talipes equinovarus |
| HP:0002023 | Anal atresia |
| HP:0002089 | Pulmonary hypoplasia |
| HP:0002139 | Arrhinencephaly |
| HP:0002308 | Chiari malformation |
| HP:0002323 | Anencephaly |
| HP:0002475 | Myelomeningocele |
| HP:0002607 | Bowel incontinence |
| HP:0002644 | Abnormal pelvic girdle bone morphology |
| HP:0002650 | Scoliosis |
| HP:0003199 | Decreased muscle mass |
| HP:0003298 | Spina bifida occulta |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009436 | Neural Tube Defects | C10.500.680; C16.131.666.680 |
| C537571 | Jeune syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases expression, decreases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| sodium arsenite | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | affects expression, affects methylation | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Amiodarone | increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Cisplatin | increases expression, affects cotreatment | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Estradiol | decreases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Valproic Acid | affects expression | 1 |
| 1-Methyl-3-isobutylxanthine | affects cotreatment, increases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Acrylamide | decreases expression | 1 |
Clinical trials (associated diseases)
44 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00301587 | PHASE3 | WITHDRAWN | A Study to Evaluate Folate Levels in Women Taking Oral Contraceptives |
| NCT00468481 | PHASE3 | COMPLETED | Efficacy and Safety Study for an Oral Contraceptive Containing Folate |
| NCT01392989 | PHASE2 | COMPLETED | Post T-plant Infusion of Allogeneic Cytokine Induced Killer (CIK) Cells as Consolidative Therapy in Myelodysplastic Syndromes/Myeloproliferative Disorders |
| NCT00452829 | PHASE1 | COMPLETED | Prevention of Neural Tube Defects by Inositol in Conjunction With Folic Acid (PONTI Study) |
| NCT03794011 | PHASE1 | ACTIVE_NOT_RECRUITING | Patch vs. No Patch Fetoscopic Meningomyelocele Repair Study |
| NCT02230072 | PHASE1 | COMPLETED | Fetoscopic Meningomyelocele Repair Study |
| NCT00341068 | Not specified | TERMINATED | Genetic Analysis of Neural Tube and Orofacial Cleft Defects in the Irish Population |
| NCT00394862 | Not specified | COMPLETED | Efficacy of Weekly Versus Daily Folic Acid Supplementation |
| NCT01244399 | Not specified | COMPLETED | Influence of Espresso on Adsorption of Myo-inositol |
| NCT01253746 | Not specified | UNKNOWN | Genetics of Neural Tube Defects |
| NCT01743196 | Not specified | COMPLETED | Folate Metabolism in Normal Weight and Obese Women of Child-bearing Age |
| NCT03090633 | Not specified | ACTIVE_NOT_RECRUITING | Fetoscopic Repair of Isolated Fetal Spina Bifida |
| NCT03315637 | Not specified | UNKNOWN | Fetal Endoscopic Surgery for Spina Bifida |
| NCT03856034 | Not specified | RECRUITING | Laparotomy Versus Percutaneous Endoscopic Correction of Myelomeningocele |
| NCT03936322 | Not specified | COMPLETED | Minimally Invasive Fetoscopic Regenerative Repair of Spina Bifida - A Pilot Study |
| NCT04135274 | Not specified | COMPLETED | Is Neutrophil to Lymphocyte Ratio a Prognostic Factor of Sepsis in Newborns With Operated Neural Tube Defects? |
| NCT04140669 | Not specified | TERMINATED | Automated Myocardial Performance Index Using Samsung HERA W10 |
| NCT04362592 | Not specified | ACTIVE_NOT_RECRUITING | In-Utero Endoscopic Correction of Spina Bifida |
| NCT04523233 | Not specified | UNKNOWN | Metals/Vitamins Levels in NTD |
| NCT04760509 | Not specified | UNKNOWN | Short- Term Follow up Of Neonates Born With Neural Tube Defect |
| NCT04770805 | Not specified | ACTIVE_NOT_RECRUITING | In Utero Fetoscopic Repair Program for Sacral Myelomeningoceles and Mye-LDM |
| NCT05454085 | Not specified | COMPLETED | Could Bisphenol-A Have a Role in the Etiology of Neural Tube Defects |
| NCT05672849 | Not specified | RECRUITING | Safety and Efficacy of Devices Used in Fetoscopic Neural Tube Defect Repair Cases |
| NCT05883761 | Not specified | COMPLETED | Birth Outcomes In Eswatini After Transition To Dolutegravir-Based Treatment |
| NCT05935631 | Not specified | COMPLETED | Feasibility, Acceptability and Directional Signal Effect on Blood Folate Levels of Iodized Salt Fortified With Folic Acid: Clinical Study |
| NCT06135883 | Not specified | COMPLETED | Assessing Folic Acid in High-Risk Pregnancy for Neural Tube Defects |
| NCT06174883 | Not specified | COMPLETED | Salt-FA to Increase Folate Levels |
| NCT06734611 | Not specified | NOT_YET_RECRUITING | Folic Acid Salt Study (FISFA Zambia) |
| NCT06904612 | Not specified | COMPLETED | Using Iodized Salt to Improve Serum Folate, B12 and Iron Levels |
| NCT06946563 | Not specified | RECRUITING | Fetoscopic Neural Tube Defect Repair |
| NCT00068224 | Not specified | COMPLETED | Clinical and Molecular Investigations Into Ciliopathies |
| NCT04874909 | Not specified | COMPLETED | Classification, Functional Stratification and Biomarkers in Ciliopathy (CILLICORIRCM) |
| NCT00060606 | Not specified | COMPLETED | Management of Myelomeningocele Study (MOMS) |
| NCT00966927 | Not specified | ACTIVE_NOT_RECRUITING | Assessment of Functional Independence and Quality of Life in Adolescents With Spina Bifid |
| NCT00975338 | Not specified | COMPLETED | The LETS Study: A Longitudinal Evaluation of Transition Services |
| NCT02592291 | Not specified | RECRUITING | Mobile Health Self-Management and Support System for Chronic and Complex Health Conditions |
| NCT03044821 | Not specified | TERMINATED | Open Myelomeningocele Repair With High Maternal BMI |
| NCT03544970 | Not specified | COMPLETED | An Audit of the Posterior Fossa Characterization in Open Spina Bifida Based on Tertiary Center Experience |
| NCT04763382 | Not specified | UNKNOWN | The Effect of Nursing Interventions for Clean Intermittent Catheterization Caregivers and Child |
| NCT05718440 | Not specified | RECRUITING | Uronephrological Complications Risk Factors in Spinal Dysraphism |
Related Atlas pages
- Associated diseases: spina bifida, ciliopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ciliopathy, Jeune syndrome, neural tube defect, neural tube defects, susceptibility to, short-rib thoracic dysplasia 6 with or without polydactyly