FXYD2
gene geneOn this page
Also known as MGC12372
Summary
FXYD2 (FXYD domain containing ion transport regulator 2, HGNC:4026) is a protein-coding gene on chromosome 11q23.3, encoding Sodium/potassium-transporting ATPase subunit gamma (P54710). May be involved in forming the receptor site for cardiac glycoside binding or may modulate the transport function of the sodium ATPase.
This gene encodes a member of the FXYD family of transmembrane proteins. This particular protein encodes the sodium/potassium-transporting ATPase subunit gamma. Mutations in this gene have been associated with Renal Hypomagnesemia-2. Alternatively spliced transcript variants have been described. Read-through transcripts have been observed between this locus and the upstream FXYD domain-containing ion transport regulator 6 (FXYD6, GeneID 53826) locus.
Source: NCBI Gene 486 — RefSeq curated summary.
At a glance
- Gene–disease (curated): renal hypomagnesemia 2 (Strong, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 67 total — 1 pathogenic
- Phenotypes (HPO): 9
- Druggable target: yes — 5 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001680
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:4026 |
| Approved symbol | FXYD2 |
| Name | FXYD domain containing ion transport regulator 2 |
| Location | 11q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC12372 |
| Ensembl gene | ENSG00000137731 |
| Ensembl biotype | protein_coding |
| OMIM | 601814 |
| Entrez | 486 |
Gene structure
Transcript identifiers
Ensembl transcripts: 17 — 13 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000260287, ENST00000292079, ENST00000317594, ENST00000514385, ENST00000528014, ENST00000532119, ENST00000533281, ENST00000534383, ENST00000910769, ENST00000910770, ENST00000910771, ENST00000910772, ENST00000910773, ENST00000910774, ENST00000910775, ENST00000910776, ENST00000960084
RefSeq mRNA: 2 — MANE Select: NM_001680
NM_001680, NM_021603
CCDS: CCDS8385, CCDS8386
Canonical transcript exons
ENST00000292079 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001130350 | 117820057 | 117820372 |
| ENSE00003484020 | 117820666 | 117820696 |
| ENSE00003553678 | 117820859 | 117820895 |
| ENSE00003595432 | 117822679 | 117822717 |
| ENSE00003649316 | 117824654 | 117824744 |
| ENSE00003676408 | 117822406 | 117822480 |
Expression profiles
Bgee: expression breadth ubiquitous, 162 present calls, max score 99.94.
FANTOM5 (CAGE): breadth broad, TPM avg 6.6448 / max 1732.7047, expressed in 352 samples.
FANTOM5 promoters (14 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 122508 | 2.6556 | 60 |
| 122513 | 2.5837 | 124 |
| 122510 | 0.3320 | 139 |
| 122507 | 0.2270 | 25 |
| 122516 | 0.1870 | 50 |
| 122512 | 0.1737 | 42 |
| 122509 | 0.1623 | 80 |
| 122511 | 0.1039 | 17 |
| 122505 | 0.0704 | 22 |
| 122517 | 0.0632 | 26 |
Top tissues by expression
245 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| metanephros cortex | UBERON:0010533 | 99.94 | gold quality |
| body of pancreas | UBERON:0001150 | 99.33 | gold quality |
| gall bladder | UBERON:0002110 | 99.29 | gold quality |
| islet of Langerhans | UBERON:0000006 | 98.10 | gold quality |
| pancreas | UBERON:0001264 | 97.53 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 94.14 | gold quality |
| cortex of kidney | UBERON:0001225 | 90.24 | gold quality |
| minor salivary gland | UBERON:0001830 | 89.14 | gold quality |
| kidney | UBERON:0002113 | 86.46 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.60 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 85.35 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 83.76 | gold quality |
| mouth mucosa | UBERON:0003729 | 82.89 | gold quality |
| metanephros | UBERON:0000081 | 82.46 | gold quality |
| right ovary | UBERON:0002118 | 78.06 | gold quality |
| colonic epithelium | UBERON:0000397 | 78.02 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 77.88 | silver quality |
| left ovary | UBERON:0002119 | 76.83 | gold quality |
| apex of heart | UBERON:0002098 | 76.53 | gold quality |
| left uterine tube | UBERON:0001303 | 75.13 | gold quality |
| lymph node | UBERON:0000029 | 74.96 | gold quality |
| body of uterus | UBERON:0009853 | 74.36 | gold quality |
| spleen | UBERON:0002106 | 73.85 | gold quality |
| granulocyte | CL:0000094 | 72.91 | gold quality |
| ovary | UBERON:0000992 | 72.56 | gold quality |
| liver | UBERON:0002107 | 71.90 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 71.10 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 70.45 | gold quality |
| renal medulla | UBERON:0000362 | 70.13 | gold quality |
| omental fat pad | UBERON:0010414 | 69.51 | gold quality |
Single-cell (SCXA)
Detected in 20 experiment(s), a significant marker in 19.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-10 | yes | 10332.10 |
| E-MTAB-8495 | yes | 8770.64 |
| E-GEOD-124472 | yes | 7934.30 |
| E-HCAD-9 | yes | 7181.52 |
| E-MTAB-6701 | yes | 5978.61 |
| E-MTAB-5061 | yes | 4843.61 |
| E-GEOD-114530 | yes | 4652.45 |
| E-HCAD-24 | yes | 3873.89 |
| E-GEOD-81547 | yes | 3297.65 |
| E-MTAB-10553 | yes | 2927.05 |
| E-HCAD-31 | yes | 2324.43 |
| E-HCAD-38 | yes | 1706.42 |
| E-GEOD-83139 | yes | 1369.77 |
| E-ENAD-27 | yes | 1304.09 |
| E-CURD-79 | yes | 1303.27 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HNF1B, PCBD1, RUNX1
miRNA regulators (miRDB)
10 targeting FXYD2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-940 | 99.37 | 66.14 | 2064 |
| HSA-MIR-6808-5P | 99.31 | 66.23 | 2150 |
| HSA-MIR-6893-5P | 99.31 | 66.25 | 2119 |
| HSA-MIR-874-5P | 96.93 | 63.92 | 1014 |
| HSA-MIR-4538 | 95.61 | 65.34 | 449 |
Literature-anchored findings (GeneRIF, showing 17)
- Expression in transfectants reduces Na+ and K+ affinity of Na,K-ATPase. Endogenous expression in certain nephron segments correlates with low Na+ affinity in Na,K-ATPase. (PMID:10559186)
- the TM domain of FYXD2 effects the shift in apparent Na+ affinity (PMID:12907667)
- Activity of GLAST directs FXYD2 protein/gamma subunit to the cell surface, that leads to the activation of the astroglial sodium pump. (PMID:17316900)
- structures of the FXYD proteins (with emphasis on 1-4), as well as their dynamics and their associations with the lipid (PMID:18000745)
- results suggest that FXYD2 can mediate basolateral extrusion of magnesium from cultured renal epithelial cells and provide new insights into the understanding of the possible physiological roles of FXYD2 wild-type and mutant proteins. (PMID:18448590)
- Data conclude that human proximal tubular cells respond to a hyperosmotic challenge with an increase in FXYD2 and Na,K-ATPase protein expression, though to a smaller absolute extent in patient cells. (PMID:19865785)
- Study reveals, in various human tissues, the specific expression of FXYD2, which may associate with Na, K-ATPase in selected cell types and modulate its catalytic properties. (PMID:19879113)
- Datab propose human FXYD2gammaa as a novel beta cell-specific biomarker. (PMID:20379810)
- wild type HNF1B specifically induces FXYD2A transcription whereas all HNF1B mutants partially prevented it. (PMID:21130072)
- findings confirm the presence of an FXYD2 peptide in the crab gill Na,K-ATPase and demonstrate that this peptide plays an important role in regulating enzyme activity (PMID:22588134)
- This is the first report demonstrating the potential utility of FXYD2 immunohistochemistry in the diagnosis of chromophobe renal cell carcinoma (PMID:23196795)
- PCBD1 (dimerization cofactor of HNF-1alpha) is coactivator of the HNF1B-mediated transcription necessary for fine tuning ATPase Na+/K+ transporting gamma 1 polypeptide (FXYD2) transcription in the distal convoluted tubule. (PMID:24204001)
- our findings suggested that FXYD2c played a role in regulation of NKA activity by enhancing the expression of NKA in HK-2 cells upon hypertonic challenge. (PMID:24258619)
- FXYD2b could regulate the Na,K-ATPase by modulating the effective membrane surface electrostatics near the ion binding sites of the pump. (PMID:24794573)
- Recurrent FXYD2 p.Gly41Arg mutation is associated with isolated dominant hypomagnesaemia. (PMID:25765846)
- FXYD2 is functionally upregulated in ovarian clear cell carcinoma and may serve as a promising prognostic biomarker and therapeutic target of cardiac glycosides in OCCC (PMID:26910837)
- Downregulation of FXYD2 Is Associated with Poor Prognosis and Increased Regulatory T Cell Infiltration in Clear Cell Renal Cell Carcinoma. (PMID:36313180)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Fxyd2 | ENSMUSG00000059412 |
| rattus_norvegicus | Fxyd2 | ENSRNOG00000016469 |
Paralogs (6): FXYD5 (ENSG00000089327), FXYD3 (ENSG00000089356), FXYD6 (ENSG00000137726), FXYD4 (ENSG00000150201), FXYD7 (ENSG00000221946), FXYD1 (ENSG00000266964)
Protein
Protein identifiers
Sodium/potassium-transporting ATPase subunit gamma — P54710 (reviewed: P54710)
Alternative names: FXYD domain-containing ion transport regulator 2, Sodium pump gamma chain
All UniProt accessions (1): P54710
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in forming the receptor site for cardiac glycoside binding or may modulate the transport function of the sodium ATPase.
Subunit / interactions. Regulatory subunit of the sodium/potassium-transporting ATPase which is composed of a catalytic alpha subunit, an auxiliary non-catalytic beta subunit and an additional regulatory subunit.
Subcellular location. Membrane.
Tissue specificity. Expressed in the distal convoluted tubule in the kidney. Found on basolateral membranes of nephron epithelial cells.
Disease relevance. Hypomagnesemia 2 (HOMG2) [MIM:154020] A disorder due to primary renal wasting of magnesium. Plasma levels of other electrolytes are normal. The only abnormality found, in addition to low magnesium levels, is lowered renal excretion of calcium resulting in hypocalciuria. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the FXYD family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P54710-1 | 1, A | yes |
| P54710-2 | 2, B |
RefSeq proteins (2): NP_001671, NP_067614 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000272 | Ion-transport_regulator_FXYD | Family |
| IPR047282 | ATNG | Family |
| IPR047297 | FXYD_motif | Conserved_site |
Pfam: PF02038
UniProt features (6 total): chain 1, transmembrane region 1, splice variant 1, sequence variant 1, helix 1, strand 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7E20 | ELECTRON MICROSCOPY | 2.7 |
| 7E21 | ELECTRON MICROSCOPY | 2.9 |
| 7E1Z | ELECTRON MICROSCOPY | 3.2 |
| 2MKV | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P54710-F1 | 76.04 | 0.36 |
Function
Pathways and Gene Ontology
Reactome pathways
11 pathways
| ID | Pathway |
|---|---|
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-936837 | Ion transport by P-type ATPases |
| R-HSA-9679191 | Potential therapeutics for SARS |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-397014 | Muscle contraction |
| R-HSA-5576891 | Cardiac conduction |
| R-HSA-5663205 | Infectious disease |
| R-HSA-9679506 | SARS-CoV Infections |
| R-HSA-9824446 | Viral Infection Pathways |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 236 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_TRANSMEMBRANE_ELECTROCHEMICAL_GRADIENT, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_SODIUM_ION_TRANSMEMBRANE_TRANSPORT, ENK_UV_RESPONSE_KERATINOCYTE_UP, MODULE_64, GOBP_POTASSIUM_ION_HOMEOSTASIS, GOBP_HYPEROSMOTIC_RESPONSE, HNF1_Q6, GOBP_POSITIVE_REGULATION_OF_SODIUM_ION_TRANSPORT, XU_HGF_SIGNALING_NOT_VIA_AKT1_48HR_DN, GOBP_POSITIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_REGULATION_OF_SODIUM_ION_TRANSPORT, NFKB_Q6
GO Biological Process (15): intracellular sodium ion homeostasis (GO:0006883), negative regulation of cell population proliferation (GO:0008285), establishment or maintenance of transmembrane electrochemical gradient (GO:0010248), intracellular potassium ion homeostasis (GO:0030007), sodium ion export across plasma membrane (GO:0036376), transmembrane transport (GO:0055085), cellular hyperosmotic salinity response (GO:0071475), proton transmembrane transport (GO:1902600), positive regulation of sodium ion export across plasma membrane (GO:1903278), potassium ion import across plasma membrane (GO:1990573), monoatomic ion transport (GO:0006811), potassium ion transport (GO:0006813), sodium ion transport (GO:0006814), regulation of monoatomic ion transport (GO:0043269), obsolete inorganic cation transmembrane transport (GO:0098662)
GO Molecular Function (5): ATPase activator activity (GO:0001671), sodium channel regulator activity (GO:0017080), protein-macromolecule adaptor activity (GO:0030674), protein binding (GO:0005515), ion channel regulator activity (GO:0099106)
GO Cellular Component (5): plasma membrane (GO:0005886), sodium:potassium-exchanging ATPase complex (GO:0005890), basolateral plasma membrane (GO:0016323), extracellular exosome (GO:0070062), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Cardiac conduction | 1 |
| Ion channel transport | 1 |
| SARS-CoV Infections | 1 |
| Muscle contraction | 1 |
| Disease | 1 |
| Viral Infection Pathways | 1 |
| Infectious disease | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular monoatomic cation homeostasis | 2 |
| transport | 2 |
| metal ion transport | 2 |
| sodium ion homeostasis | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| monoatomic ion transmembrane transport | 1 |
| potassium ion homeostasis | 1 |
| sodium ion transmembrane transport | 1 |
| export across plasma membrane | 1 |
| cellular process | 1 |
| hyperosmotic salinity response | 1 |
| cellular response to salt stress | 1 |
| cellular hyperosmotic response | 1 |
| monoatomic cation transmembrane transport | 1 |
| sodium ion export across plasma membrane | 1 |
| positive regulation of sodium ion transmembrane transport | 1 |
| regulation of sodium ion export across plasma membrane | 1 |
| potassium ion transmembrane transport | 1 |
| inorganic cation import across plasma membrane | 1 |
| monoatomic ion transport | 1 |
| regulation of transport | 1 |
| ATP-dependent activity | 1 |
| molecular function activator activity | 1 |
| sodium channel activity | 1 |
| ion channel regulator activity | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| binding | 1 |
| monoatomic ion channel activity | 1 |
| channel regulator activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cation-transporting ATPase complex | 1 |
| plasma membrane protein complex | 1 |
| basal plasma membrane | 1 |
| plasma membrane region | 1 |
| extracellular vesicle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
772 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| FXYD2 | CLDN16 | Q9Y5I7 | 923 |
| FXYD2 | ATP1A1 | P05023 | 885 |
| FXYD2 | ATP1A3 | P13637 | 885 |
| FXYD2 | ATP1A4 | Q13733 | 874 |
| FXYD2 | CLDN19 | Q8N6F1 | 853 |
| FXYD2 | ATP1B1 | P05026 | 833 |
| FXYD2 | SLC12A3 | P55017 | 828 |
| FXYD2 | FXYD4 | P59646 | 777 |
| FXYD2 | TRPM6 | Q9BX84 | 719 |
| FXYD2 | ATP2A1 | O14983 | 680 |
| FXYD2 | FXYD3 | Q14802 | 680 |
| FXYD2 | FXYD5 | Q96DB9 | 674 |
| FXYD2 | SLC37A4 | O43826 | 654 |
| FXYD2 | CNNM2 | Q9H8M5 | 570 |
| FXYD2 | IL10RA | Q13651 | 549 |
| FXYD2 | KMT2A | Q03164 | 549 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ATP1A1 | ATP1B1 | psi-mi:“MI:0915”(physical association) | 0.910 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): FXYD2 (Synthetic Lethality), FXYD2 (Two-hybrid), FXYD2 (Two-hybrid), FXYD2 (Affinity Capture-MS), FXYD2 (Affinity Capture-MS), FXYD2 (Affinity Capture-MS), FXYD2 (PCA), FXYD2 (PCA), RRS1 (Two-hybrid), FXYD2 (Affinity Capture-MS)
ESM2 similar proteins: D4A6L0, I3LMB3, O00168, O73698, O76095, O77049, O88823, O88824, O97797, P0C851, P54710, P56513, P59645, P59646, Q04645, Q04646, Q04679, Q04680, Q08CB3, Q14802, Q1RMB5, Q1XF11, Q3MHZ5, Q3SZX0, Q3UPR0, Q4R566, Q5RB29, Q5T848, Q61835, Q63113, Q66IQ1, Q6X9T8, Q70RD5, Q810F0, Q86XR5, Q8C419, Q8K467, Q8NEW7, Q8QZT4, Q8R143
Diamond homologs: G1TZA0, I3LMB3, O00168, O08589, O13001, O97797, P54710, P56513, P58549, P58550, P59645, P59646, P59647, P59648, P59649, Q04645, Q04646, Q04679, Q04680, Q14802, Q3MHZ5, Q3SZX0, Q3ZBJ3, Q4R566, Q5RB29, Q61835, Q63113, Q91XV6, Q96DB9, Q9D164, Q9D2W0, Q9H0Q3, Q9Z239, W5P3P0, P97808, C0HJJ0
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HNF1B | “up-regulates quantity by expression” | FXYD2 | “transcriptional regulation” |
| PCBD1 | “up-regulates quantity by expression” | FXYD2 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
67 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 18 |
| Likely benign | 26 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 7684 | NM_001680.5(FXYD2):c.121G>A (p.Gly41Arg) | Pathogenic |
SpliceAI
1240 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:117820697:C:CC | acceptor_gain | 1.0000 |
| 11:117820855:TCA:T | donor_loss | 1.0000 |
| 11:117820855:TCACC:T | donor_loss | 1.0000 |
| 11:117820857:A:T | donor_loss | 1.0000 |
| 11:117820897:T:C | acceptor_gain | 1.0000 |
| 11:117820897:T:TC | acceptor_gain | 1.0000 |
| 11:117822402:TTA:T | donor_loss | 1.0000 |
| 11:117822403:TA:T | donor_loss | 1.0000 |
| 11:117822404:A:AC | donor_gain | 1.0000 |
| 11:117822405:C:CT | donor_gain | 1.0000 |
| 11:117822484:C:CT | acceptor_gain | 1.0000 |
| 11:117822485:G:T | acceptor_gain | 1.0000 |
| 11:117822572:C:CT | acceptor_gain | 1.0000 |
| 11:117820664:A:T | donor_loss | 0.9900 |
| 11:117820665:C:CT | donor_loss | 0.9900 |
| 11:117820665:CCTG:C | donor_gain | 0.9900 |
| 11:117820692:TTTGC:T | acceptor_gain | 0.9900 |
| 11:117820693:TTGC:T | acceptor_gain | 0.9900 |
| 11:117820694:TGCCT:T | acceptor_loss | 0.9900 |
| 11:117820695:GCCTG:G | acceptor_loss | 0.9900 |
| 11:117820697:CTG:C | acceptor_loss | 0.9900 |
| 11:117820698:T:C | acceptor_loss | 0.9900 |
| 11:117820891:TCTGC:T | acceptor_loss | 0.9900 |
| 11:117820893:TGCC:T | acceptor_loss | 0.9900 |
| 11:117820895:CC:C | acceptor_loss | 0.9900 |
| 11:117820895:CCT:C | acceptor_gain | 0.9900 |
| 11:117820896:C:CA | acceptor_loss | 0.9900 |
| 11:117820896:C:CC | acceptor_gain | 0.9900 |
| 11:117820896:CTT:C | acceptor_loss | 0.9900 |
| 11:117822399:CACTT:C | donor_loss | 0.9900 |
AlphaMissense
430 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:117822435:G:T | A37D | 0.997 |
| 11:117822465:C:G | R27P | 0.996 |
| 11:117822423:C:T | G41E | 0.994 |
| 11:117822424:C:G | G41R | 0.994 |
| 11:117822424:C:T | G41R | 0.994 |
| 11:117822444:G:T | A34D | 0.994 |
| 11:117822468:A:T | V26D | 0.993 |
| 11:117822686:G:C | F19L | 0.991 |
| 11:117822686:G:T | F19L | 0.991 |
| 11:117822688:A:G | F19L | 0.991 |
| 11:117822466:G:T | R27S | 0.990 |
| 11:117822453:A:G | L31P | 0.988 |
| 11:117822687:A:C | F19C | 0.988 |
| 11:117822441:C:T | G35E | 0.986 |
| 11:117822456:C:T | G30D | 0.984 |
| 11:117822442:C:G | G35R | 0.983 |
| 11:117822442:C:T | G35R | 0.983 |
| 11:117822459:C:T | G29E | 0.983 |
| 11:117822420:A:G | L42P | 0.982 |
| 11:117822431:G:C | F38L | 0.981 |
| 11:117822431:G:T | F38L | 0.981 |
| 11:117822433:A:G | F38L | 0.981 |
| 11:117822420:A:T | L42H | 0.975 |
| 11:117822420:A:C | L42R | 0.974 |
| 11:117822426:A:T | V40E | 0.972 |
| 11:117822457:C:G | G30R | 0.971 |
| 11:117822477:T:C | Y23C | 0.970 |
| 11:117822438:A:C | L36R | 0.969 |
| 11:117822480:T:A | D22V | 0.968 |
| 11:117822411:A:T | L45H | 0.963 |
dbSNP variants (sampled 300 via entrez): RS1000349117 (11:117827469 G>A), RS1000486413 (11:117827331 C>T), RS1000549075 (11:117825747 G>C,T), RS1000820143 (11:117826244 G>A,T), RS1001652061 (11:117822198 A>C,T), RS1001717937 (11:117828152 A>G), RS1001871070 (11:117826630 G>A,C), RS1002122596 (11:117822387 T>TGGGGGG), RS1002382730 (11:117821242 G>A,T), RS1002427268 (11:117826163 A>G), RS1002715449 (11:117823562 C>G,T), RS1002799052 (11:117823771 G>A), RS1002940978 (11:117828994 G>A,C,T), RS1003091264 (11:117828791 G>A), RS1003432258 (11:117827522 T>C)
Disease associations
OMIM: gene MIM:601814 | disease phenotypes: MIM:154020
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| renal hypomagnesemia 2 | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| renal hypomagnesemia 2 | Moderate | AD |
Mondo (1): renal hypomagnesemia 2 (MONDO:0007937)
Orphanet (1): Autosomal dominant primary hypomagnesemia with hypocalciuria (Orphanet:34528)
HPO phenotypes
9 total (9 of 9 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000934 | Chondrocalcinosis |
| HP:0001250 | Seizure |
| HP:0002900 | Hypokalemia |
| HP:0002917 | Hypomagnesemia |
| HP:0003127 | Hypocalciuria |
| HP:0003324 | Generalized muscle weakness |
| HP:0005567 | Renal magnesium wasting |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003997_18 | Myopia | 1.000000e-11 |
| GCST006993_11 | Hippocampal volume in Alzheimer’s disease dementia | 1.000000e-07 |
| GCST010002_199 | Refractive error | 3.000000e-34 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005035 | hippocampal volume |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C537152 | Hypomagnesemia 2, renal (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2095186 (PROTEIN COMPLEX GROUP)
Molecules with ChEMBL bioactivity
5 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 160,774 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1503 | OMEPRAZOLE | 4 | 52,284 |
| CHEMBL1751 | DIGOXIN | 4 | 67,342 |
| CHEMBL254219 | DIGITOXIN | 4 | 16,757 |
| CHEMBL480 | LANSOPRAZOLE | 4 | 24,317 |
| CHEMBL2068971 | ROSTAFUROXIN | 2 | 74 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — Na+/K+-ATPases
ChEMBL bioactivities
212 potent at pChembl≥5 of 264 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.52 | IC50 | 3 | nM | CHEMBL2092909 |
| 8.32 | IC50 | 4.79 | nM | CHEMBL1651648 |
| 8.17 | IC50 | 6.79 | nM | CHEMBL1651648 |
| 8.15 | IC50 | 7 | nM | CHEMBL2092738 |
| 8.15 | IC50 | 7.04 | nM | CHEMBL1651624 |
| 8.10 | IC50 | 8 | nM | CHEMBL3085467 |
| 8.10 | IC50 | 8 | nM | CHEMBL3085497 |
| 8.10 | IC50 | 8 | nM | DIGITOXIGENIN |
| 8.10 | IC50 | 8 | nM | DIGITOXIN |
| 8.05 | IC50 | 9 | nM | CHEMBL3085468 |
| 7.98 | IC50 | 10.5 | nM | CHEMBL3349024 |
| 7.97 | IC50 | 10.7 | nM | CHEMBL3350144 |
| 7.92 | IC50 | 12 | nM | CHEMBL2069010 |
| 7.80 | IC50 | 16 | nM | CHEMBL2068887 |
| 7.80 | IC50 | 16 | nM | CHEMBL3349024 |
| 7.75 | IC50 | 17.8 | nM | CHEMBL1159613 |
| 7.70 | IC50 | 20 | nM | DIGITOXIGENIN |
| 7.70 | IC50 | 20 | nM | CHEMBL2068894 |
| 7.70 | IC50 | 20 | nM | CHEMBL2068887 |
| 7.66 | IC50 | 22 | nM | BUFALIN |
| 7.60 | IC50 | 25 | nM | CHEMBL2068888 |
| 7.55 | IC50 | 28.2 | nM | CHEMBL3350144 |
| 7.52 | IC50 | 30 | nM | CHEMBL2068896 |
| 7.52 | IC50 | 30 | nM | CHEMBL2068909 |
| 7.41 | IC50 | 38.9 | nM | CHEMBL3349024 |
| 7.40 | IC50 | 40 | nM | CHEMBL126930 |
| 7.40 | IC50 | 40 | nM | CHEMBL2069036 |
| 7.35 | IC50 | 45 | nM | CHEMBL2069112 |
| 7.30 | IC50 | 50 | nM | CHEMBL2069053 |
| 7.22 | IC50 | 60 | nM | CHEMBL2069110 |
| 7.22 | IC50 | 60.3 | nM | CHEMBL3349024 |
| 7.22 | IC50 | 60 | nM | CHEMBL2115485 |
| 7.20 | IC50 | 63 | nM | DIGITOXIGENIN |
| 7.19 | IC50 | 64.5 | nM | CHEMBL1159613 |
| 7.16 | IC50 | 70 | nM | CHEMBL3085496 |
| 7.12 | IC50 | 75 | nM | CHEMBL2092910 |
| 7.10 | IC50 | 80 | nM | CHEMBL2068983 |
| 7.10 | IC50 | 80 | nM | CHEMBL2069040 |
| 7.06 | IC50 | 88 | nM | CHEMBL2068949 |
| 7.06 | IC50 | 87 | nM | CHEMBL3265172 |
| 7.03 | IC50 | 93.3 | nM | CHEMBL3349024 |
| 7.00 | IC50 | 100 | nM | CHEMBL2068885 |
| 7.00 | IC50 | 100 | nM | CHEMBL333694 |
| 7.00 | IC50 | 100 | nM | CHEMBL126063 |
| 7.00 | IC50 | 99 | nM | CHEMBL2069062 |
| 7.00 | IC50 | 100 | nM | CHEMBL2069059 |
| 6.92 | IC50 | 120 | nM | DIGITOXIGENIN |
| 6.89 | IC50 | 130 | nM | CHEMBL125966 |
| 6.89 | IC50 | 130 | nM | CHEMBL124276 |
| 6.89 | IC50 | 129 | nM | CHEMBL3349024 |
PubChem BioAssay actives
210 with measured affinity, of 373 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(3S,8R,9S,10S,13R,14R,17S)-14-hydroxy-10,13-dimethyl-3-[[(2R,3S,4S,5R,6S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy]-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0030 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-14-hydroxy-10,13-dimethyl-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0048 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-3-[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0070 | uM |
| 3-[(3S,8R,9S,10S,13R,14R,17R)-14-hydroxy-10,13-dimethyl-3-[[(2R,3S,4S,5R,6S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy]-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0070 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-3,14-dihydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0080 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-3-[(2R,4S,5S,6R)-5-[(2S,4S,5S,6R)-5-[(2S,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy-4-hydroxy-6-methyloxan-2-yl]oxy-4-hydroxy-6-methyloxan-2-yl]oxy-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0080 | uM |
| 3-[(3S,5S,8R,9S,10S,13R,14R,17R)-3-[[(2S,3R,4R,6S)-3,4-dihydroxy-6-[[(2S,3R,4R,6S)-3,4,6-trihydroxyoxan-2-yl]methoxy]oxan-2-yl]methoxy]-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0080 | uM |
| 3-[(3S,5S,8R,9S,10S,13R,14R,17R)-3-[[(2S,3R,4R,6S)-6-[[(2S,3R,4R,6S)-3,4-dihydroxy-6-[[(2S,3R,4R,6S)-3,4,6-trihydroxyoxan-2-yl]methoxy]oxan-2-yl]methoxy]-3,4-dihydroxyoxan-2-yl]methoxy]-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0080 | uM |
| 3-[(3S,5S,8R,9S,10S,13R,14R,17R)-14-hydroxy-10,13-dimethyl-3-[[(2S,3R,4R,6S)-3,4,6-trihydroxyoxan-2-yl]methoxy]-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0090 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-14-hydroxy-10,13-dimethyl-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0105 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-14-hydroxy-10,13-dimethyl-3-[(2R,3S,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0107 | uM |
| (2R,4S,5R)-2-[[(3S,5R,8R,9S,10S,13R,14S,17S)-14-hydroxy-10,13-dimethyl-17-(nitromethyl)-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxy]-6-methyloxane-3,4,5-triol | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0120 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-(2-aminoethoxyimino)prop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146853: 50% displacement of the specific [3H]ouabain binding from the dog kidney Na+/K+ ATPase | ic50 | 0.0160 | uM |
| 3-[(13R)-14-hydroxy-10,13-dimethyl-3-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0178 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(E)-3-aminopropoxyiminomethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;oxalic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0200 | uM |
| 5-[(3S,5R,8R,9S,10S,13R,14S,17R)-3,14-dihydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]pyran-2-one | 1941870: Inhibition of NA+/K+ ATPase (unknown origin) activity | ic50 | 0.0220 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-[2-(dimethylamino)ethoxyimino]prop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146853: 50% displacement of the specific [3H]ouabain binding from the dog kidney Na+/K+ ATPase | ic50 | 0.0250 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-[2-(dimethylamino)ethoxyimino]prop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;oxalic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0300 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-(2-aminoethoxyimino)-2-methylprop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;(E)-but-2-enedioic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0300 | uM |
| (2R,4bS,7S,8aR)-2-[(1E,3S)-1-(2-aminoethoxyimino)pentan-3-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.0400 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(E)-2-(dimethylamino)ethoxyiminomethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146853: 50% displacement of the specific [3H]ouabain binding from the dog kidney Na+/K+ ATPase | ic50 | 0.0400 | uM |
| (2R,4S,5R)-2-[[(3S,5R,8R,9S,10S,13R,14S,17R)-14-hydroxy-10,13-dimethyl-17-(2-nitroethyl)-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxy]-6-methyloxane-3,4,5-triol | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0450 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(2E)-2-(2-aminoethoxyimino)ethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.0500 | uM |
| (E)-but-2-enedioic acid;(3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-[2-(dimethylamino)ethoxyimino]-2-methylprop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0600 | uM |
| 6-[[(3S,8R,9S,10S,13R,14R,17S)-14-hydroxy-17-[(1S)-1-hydroxyethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxy]-2-(hydroxymethyl)oxane-3,4-diol | 146854: Compound is evaluated for inhibition of specific binding of [3H]ouabain to membranes from dog heart | ic50 | 0.0600 | uM |
| 3-[(5R,8R,9S,10S,13R,14R,17R)-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0700 | uM |
| (2R,3R,4R,5R,6R)-6-[[(3R)-14-hydroxy-17-(1-hydroxyethyl)-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxymethyl]oxane-2,3,4,5-tetrol | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.0750 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(1E,3E)-6-aminohexa-1,3-dienyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0800 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(3Z)-3-(2-aminoethoxyimino)propyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.0800 | uM |
| 3-[(3S,5R,8R,9S,10S,13R,14S,17R)-14-hydroxy-10,13-dimethyl-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-2H-furan-5-one | 146845: Inhibition of hog kidney Na+, K+-dependent ATPase | ic50 | 0.0870 | uM |
| (3S,4R,6R)-6-[[(3S,5R,8R,9S,10S,13R,14S,17S)-14-hydroxy-10,13-dimethyl-17-(nitromethyl)-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxy]-2-methyloxane-3,4-diol | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0880 | uM |
| (2R,4S,5R)-2-[[(3S,5R,8R,9S,10S,13R,14S,17S)-17-(aminomethyl)-14-hydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-3-yl]oxy]-6-methyloxane-3,4,5-triol;hydrochloride | 56911: Inhibition of [3H]- ouabain binding to digitalis receptor | ic50 | 0.0990 | uM |
| (2R,4bS,7S,8aR)-2-[(1E,3S)-1-[2-(dimethylamino)ethoxyimino]pentan-3-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.1000 | uM |
| (2R,4bS,7S,8aR)-2-[(2S,4E)-4-(2-aminoethoxyimino)butan-2-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.1000 | uM |
| 2-[(E)-[(3S,5R,8R,9S,10S,13R,14S,17S)-3,14-dihydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]methylideneamino]guanidine;hydrochloride | 146856: Displacement of [3H]ouabain from dog kidney Na+/K+ ATPase | ic50 | 0.1000 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(3Z)-3-[2-(dimethylamino)ethoxyimino]propyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;oxalic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.1000 | uM |
| (2R,4bS,7S,8aR)-2-[(2S,4E)-4-[2-(dimethylamino)ethoxyimino]butan-2-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.1300 | uM |
| 2-(dimethylamino)ethyl (E)-4-[(2R,4bS,7S,8aR)-7-hydroxy-2,4b-dimethyl-1-oxo-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-2-yl]hex-2-enoate | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.1300 | uM |
| 1-[(3R)-14-hydroxy-10,13-dimethyl-3-[[(2R,3R,4R,5R,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy]-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]ethanone | 49025: Inhibition of [3H]ouabain binding to Na/K ATP-ase in dog heart muscle | ic50 | 0.1500 | uM |
| Digoxin | 1970782: Inhibition of NA+/K+ ATPase (unknown origin) activity incubated for 15 mins in presence of ATP by ADP-Glo assay | ic50 | 0.1600 | uM |
| (2R,4bS,7S,8aS)-2-[(1E,3S)-1-(2-aminoethoxyimino)pentan-3-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.1600 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(E)-2-aminoethoxyiminomethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;(E)-but-2-enedioic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.1600 | uM |
| 2-[(E)-1-[(3S,5R,8R,9S,10S,13R,14S,17S)-3,14-dihydroxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]ethylideneamino]guanidine | 146856: Displacement of [3H]ouabain from dog kidney Na+/K+ ATPase | ic50 | 0.1995 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(E)-(4,5-dihydro-1H-imidazol-2-ylhydrazinylidene)methyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146856: Displacement of [3H]ouabain from dog kidney Na+/K+ ATPase | ic50 | 0.1995 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(2E)-2-(3-aminopropoxyimino)ethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.2000 | uM |
| 3-[(1R)-1-[(2R,4bS,7S,8aR)-7-hydroxy-2,4b-dimethyl-1-oxo-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-2-yl]propyl]-2H-furan-5-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.2000 | uM |
| (2R,4bS,7S,8aR)-2-[(1E,3S)-1-(2-aminoethoxyimino)hexan-3-yl]-7-hydroxy-2,4b-dimethyl-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-1-one | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.2000 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17R)-17-[(E,3E)-3-(3-aminopropoxyimino)-2-methylprop-1-enyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol;oxalic acid | 146858: In vitro inhibitory concentration against dog kidney Na+/K+ ATPase | ic50 | 0.2000 | uM |
| (3S,5R,8R,9S,10S,13R,14S,17S)-17-[(2E)-2-[2-(dimethylamino)ethoxyimino]ethyl]-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,14-diol | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.2500 | uM |
| 2-(dimethylamino)ethyl (E,4R)-4-[(2R,4bS,7S,8aR)-7-hydroxy-2,4b-dimethyl-1-oxo-4,4a,5,6,7,8,8a,9,10,10a-decahydro-3H-phenanthren-2-yl]hex-2-enoate | 146843: Binding affinity towards Na+,K+ -ATPase isolated from dog kidney. | ic50 | 0.2500 | uM |
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, affects methylation | 5 |
| Aflatoxin B1 | increases expression, affects expression | 3 |
| sodium arsenite | affects methylation, decreases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | affects expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| manganese chloride | increases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| cupric chloride | affects expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Zoledronic Acid | decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects expression | 1 |
| Barium | decreases activity | 1 |
| Benzene | decreases expression | 1 |
| Calcium | decreases reaction, increases transport, decreases activity | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Deoxyglucose | decreases reaction, increases transport | 1 |
| Inulin | decreases reaction, increases transport | 1 |
| Manganese | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Quercetin | increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
ChEMBL screening assays
45 unique, capped per target: 45 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1691887 | Binding | Inhibition of human Na+/ K+ ATPase at up to 10 uM | Lersivirine, a nonnucleoside reverse transcriptase inhibitor with activity against drug-resistant human immunodeficiency virus type 1. — Antimicrob Agents Chemother |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: renal hypomagnesemia 2
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): renal hypomagnesemia 2